HHsearch alignment for GI: 254780787 and conserved domain: cd04156
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.37 E-value=4.7e-12 Score=100.44 Aligned_cols=149 Identities=19% Similarity=0.231 Sum_probs=102.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE--EEECCC-CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 89862368504467778864222100123100012149--995178-438888516615789998666420680599998
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY--QVAYQG-KNITFLDTPGHAAFYEMRARGARVTDIAVLVLA 462 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~--~~~~~~-~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~ 462 (884)
T Consensus 2 ivilG~~~~GKTsil~r~~~~~~~~-----~~pTig~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~y~~~a~~iI~V~D 76 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAELVT-----TIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCC-----CCCCCCEEEEEEEECCEEEEEEEECCCCCCCCHHHHHHHCCCCEEEEEEE
T ss_conf 9999999999999999995698777-----57761503899998998999999789862474158877456778999985
Q ss_pred CCCCCC-HHHHHHHHH-HH---HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 366740-235777898-99---7099415612331244332000221000013200012347403631100247741122
Q gi|254780787|r 463 ADEEIM-PQAIESINH-AK---AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLL 537 (884)
Q Consensus 463 ~~~g~~-~qt~e~~~~-~~---~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (884)
T Consensus 77 ~td~~~~~~~~~~~~~~l~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~~~~~~~--~~~~~i~~~SAktGegi~e~f 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCS--DRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH--CCCCEEEEEECCCCCCHHHHH
T ss_conf 686788787999999998663537874999998633656679999999986999985--399999986688495999999
Q ss_pred CCHH
Q ss_conf 1000
Q gi|254780787|r 538 DAIL 541 (884)
Q Consensus 538 ~~~~ 541 (884)
T Consensus 155 ~~la 158 (160)
T cd04156 155 RKLA 158 (160)
T ss_pred HHHH
T ss_conf 9985