HHsearch alignment for GI: 254780787 and conserved domain: cd04158
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.37 E-value=6.5e-12 Score=99.43 Aligned_cols=151 Identities=19% Similarity=0.211 Sum_probs=108.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 89862368504467778864222100123100012149995178438888516615789998666420680599998366
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADE 465 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~ 465 (884)
T Consensus 2 IlilGl~~sGKTtil~~l~~~~~~~~~---pT~G~~~~~i~~~~~~l~iwD~gG~~~~r~~w~~Yy~~~~~iIfVvDssd 78 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQDEFMQPI---PTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSH 78 (169)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCC---CCCCCCEEEEEECCEEEEEEECCCCCCCCHHHHHHCCCCCEEEEEEECCH
T ss_conf 999998999889999999579968977---86881669999898899999899972446367875557627999998630
Q ss_pred -CCCHHHHHHH----HHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCH
Q ss_conf -7402357778----98997099415612331244332000221000013200012347403631100247741122100
Q gi|254780787|r 466 -EIMPQAIESI----NHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAI 540 (884)
Q Consensus 466 -g~~~qt~e~~----~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (884)
T Consensus 79 ~~~~~ea~~~l~~ll~~~~~~~~piLIlaNK~Dl~~~~~~~ei~~~l~l~~~--~~~~~~~i~~~SA~tG~Gi~e~~~WL 156 (169)
T cd04158 79 RDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKL--CCGRSWYIQGCDARSGMGLYEGLDWL 156 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCHHH--CCCCCEEEEEEECCCCCCHHHHHHHH
T ss_conf 6779999999999971275379849999735567779899999998570545--26996299955572795989999999
Q ss_pred H
Q ss_conf 0
Q gi|254780787|r 541 L 541 (884)
Q Consensus 541 ~ 541 (884)
T Consensus 157 ~ 157 (169)
T cd04158 157 S 157 (169)
T ss_pred H
T ss_conf 9