HHsearch alignment for GI: 254780787 and conserved domain: cd04160
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.57 E-value=2.3e-14 Score=116.28 Aligned_cols=155 Identities=15% Similarity=0.201 Sum_probs=106.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHH--HHCCCCCCEECCCE--EEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 89862368504467778864222--10012310001214--999517843888851661578999866642068059999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADV--AKGEIGGITQHIGA--YQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVL 461 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~--~~~e~ggitq~iga--~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv 461 (884)
T Consensus 2 ivilG~~~~GKTsll~~l~~~~~~~~~~~~~~~~~Tvg~~~~~i~~~~~~l~iwD~~Gqe~~~~l~~~y~~~a~~ii~Vv 81 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVI 81 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEE
T ss_conf 99999999888899998875036767776554035313268999989999999968987888789987428987899998
Q ss_pred ECCCCC-CHHHHHHHH----HHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 836674-023577789----899709941561233124433200022100001320001234740363110024774112
Q gi|254780787|r 462 AADEEI-MPQAIESIN----HAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKL 536 (884)
Q Consensus 462 ~~~~g~-~~qt~e~~~----~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (884)
T Consensus 82 D~sd~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~~~~~~-~~~~~~~~~~~~~SAktG~Gv~e~ 160 (167)
T cd04160 82 DSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKA-EEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred ECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHH-HHHCCCCCEEEEEECCCCCCHHHH
T ss_conf 6686788999999999975110248962999970667665778999999999999-985469989999887829498999
Q ss_pred CCCHH
Q ss_conf 21000
Q gi|254780787|r 537 LDAIL 541 (884)
Q Consensus 537 ~~~~~ 541 (884)
T Consensus 161 f~wL~ 165 (167)
T cd04160 161 IEWLV 165 (167)
T ss_pred HHHHH
T ss_conf 99996