HHsearch alignment for GI: 254780787 and conserved domain: cd04162
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.23 E-value=2e-10 Score=89.34 Aligned_cols=151 Identities=17% Similarity=0.194 Sum_probs=109.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 89862368504467778864222100123100012149995178438888516615789998666420680599998366
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADE 465 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~ 465 (884)
T Consensus 2 IlilGLd~aGKTTil~~l~~~~~~~~~--~PT~Gf~~~~i~~~~~~l~~wDlgGq~~~R~~W~~Y~~~~~gIIfVVDssD 79 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESV--VPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSAD 79 (164)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCC--CCCCCCCEEEEEECCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 999967999899999998169987653--563277469999899999998537528886569987117758999995688
Q ss_pred -CCCHHHHHHHHHHH--HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHH
Q ss_conf -74023577789899--70994156123312443320002210000132000123474036311002477411221000
Q gi|254780787|r 466 -EIMPQAIESINHAK--AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAIL 541 (884)
Q Consensus 466 -g~~~qt~e~~~~~~--~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (884)
T Consensus 80 ~~rl~eak~~L~~ll~~~~~~PlLIlaNKqDl~~a~s~~ei~~~L~L~~i~---~~r~w~iq~~s~~g~gl~~~~~~l~ 155 (164)
T cd04162 80 SERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIA---RGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCCC---CCCCEEEEEECCCCCCCHHHHHHHH
T ss_conf 889999999999997087998699998632433699999999866994637---9998899711047998589999999