HHsearch alignment for GI: 254780787 and conserved domain: cd04167
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.98 E-value=3.5e-32 Score=238.06 Aligned_cols=114 Identities=32% Similarity=0.463 Sum_probs=96.8
Q ss_pred EEEEEECCCCCHHHHHHHHHH-HHHH------------------HCCCCCCEECCCEEEEECCC-----CEEEEEECCCH
Q ss_conf 389862368504467778864-2221------------------00123100012149995178-----43888851661
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRK-ADVA------------------KGEIGGITQHIGAYQVAYQG-----KNITFLDTPGH 440 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~-~~~~------------------~~e~ggitq~iga~~~~~~~-----~~~~~iDtPGh 440 (884)
T Consensus 2 NvaiigHvdhGKTTL~d~Ll~~t~~~~~~~~~~~~~~~~~D~~~~E~eRgiTI~s~~~sl~~~~~~~k~~~inlIDTPGH 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCEECCEEEEEEECCCCCEEEEEEEECCCC
T ss_conf 59998278989899999999973445554044421135751646654203558614599998256675057877889872
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCC
Q ss_conf 5789998666420680599998366740235777898997099415612331244332
Q gi|254780787|r 441 AAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGAD 498 (884)
Q Consensus 441 ~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~ 498 (884)
T Consensus 82 ~dF~~ev~~al~~~DgailVVDa~eGv~~qT~~~l~~a~~~~l~~ilviNKiDRLi~e 139 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILE 139 (213)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHH
T ss_conf 4179999988863776799998788875779999999998699989999882343144