HHsearch alignment for GI: 254780787 and conserved domain: cd04172
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.89 E-value=1.3e-08 Score=76.79 Aligned_cols=147 Identities=16% Similarity=0.232 Sum_probs=93.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE---EEECCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89862368504467778864222100123100012149---995178--4388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY---QVAYQG--KNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~---~~~~~~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
T Consensus 8 ivlvGd~~VGKTsLi~r~~~~~F~~~y----~pTi~~~~~~~~~i~~~~v~l~iwDTaGqe~f~~l~~~~y~~~~~~ilv 83 (182)
T cd04172 8 IVVVGDSQCGKTALLHVFAKDCFPENY----VPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC 83 (182)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCC----CCEEEEEEEEEEEECCEEEEEEEEECCCCHHCCCCCHHHHCCCCEEEEE
T ss_conf 999999998999999999839999986----8735322689999999999999996898620122125551278789999
Q ss_pred EECCCCCCHHHHHHH-----HHHHH--CCCCEEEECCCCCCCCCCCCHHHHHHHCC---------CCCCCCCCCCCEEEE
Q ss_conf 983667402357778-----98997--09941561233124433200022100001---------320001234740363
Q gi|254780787|r 461 LAADEEIMPQAIESI-----NHAKA--ADVSIIVAINKIDKLGADPQKVRMSLLKH---------DVFVESMGGDILDVE 524 (884)
Q Consensus 461 v~~~~g~~~qt~e~~-----~~~~~--~~~p~iva~nk~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 524 (884)
T Consensus 84 ydit~---~~Sf~~v~~~W~~ei~~~~~~~~iiLVGnK~DLr~~~~~--~~~l~~~~~~~Vs~eeg~~~A~~~g~~~y~E 158 (182)
T cd04172 84 FDISR---PETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTT--LVELSNHRQTPVSYDQGANMAKQIGAATYIE 158 (182)
T ss_pred EECCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHH--HHHHHHCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 64897---788999999999999986879988999617101244145--6677645677869999999999769979999
Q ss_pred EEECCCCC-CCCCCCCHH
Q ss_conf 11002477-411221000
Q gi|254780787|r 525 ISAKNNLN-LDKLLDAIL 541 (884)
Q Consensus 525 ~~~~~~~~-~~~~~~~~~ 541 (884)
T Consensus 159 tSAk~~~n~V~e~F~~a~ 176 (182)
T cd04172 159 CSALQSENSVRDIFHVAT 176 (182)
T ss_pred CCCCCCCCCHHHHHHHHH
T ss_conf 170789959899999999