HHsearch alignment for GI: 254780787 and conserved domain: cd04172

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.89  E-value=1.3e-08  Score=76.79  Aligned_cols=147  Identities=16%  Similarity=0.232  Sum_probs=93.7

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE---EEECCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             89862368504467778864222100123100012149---995178--4388885166157899986664206805999
Q gi|254780787|r  386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY---QVAYQG--KNITFLDTPGHAAFYEMRARGARVTDIAVLV  460 (884)
Q Consensus       386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~---~~~~~~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv  460 (884)
T Consensus         8 ivlvGd~~VGKTsLi~r~~~~~F~~~y----~pTi~~~~~~~~~i~~~~v~l~iwDTaGqe~f~~l~~~~y~~~~~~ilv   83 (182)
T cd04172           8 IVVVGDSQCGKTALLHVFAKDCFPENY----VPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   83 (182)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCCC----CCEEEEEEEEEEEECCEEEEEEEEECCCCHHCCCCCHHHHCCCCEEEEE
T ss_conf             999999998999999999839999986----8735322689999999999999996898620122125551278789999


Q ss_pred             EECCCCCCHHHHHHH-----HHHHH--CCCCEEEECCCCCCCCCCCCHHHHHHHCC---------CCCCCCCCCCCEEEE
Q ss_conf             983667402357778-----98997--09941561233124433200022100001---------320001234740363
Q gi|254780787|r  461 LAADEEIMPQAIESI-----NHAKA--ADVSIIVAINKIDKLGADPQKVRMSLLKH---------DVFVESMGGDILDVE  524 (884)
Q Consensus       461 v~~~~g~~~qt~e~~-----~~~~~--~~~p~iva~nk~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~  524 (884)
T Consensus        84 ydit~---~~Sf~~v~~~W~~ei~~~~~~~~iiLVGnK~DLr~~~~~--~~~l~~~~~~~Vs~eeg~~~A~~~g~~~y~E  158 (182)
T cd04172          84 FDISR---PETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTT--LVELSNHRQTPVSYDQGANMAKQIGAATYIE  158 (182)
T ss_pred             EECCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHH--HHHHHHCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf             64897---788999999999999986879988999617101244145--6677645677869999999999769979999


Q ss_pred             EEECCCCC-CCCCCCCHH
Q ss_conf             11002477-411221000
Q gi|254780787|r  525 ISAKNNLN-LDKLLDAIL  541 (884)
Q Consensus       525 ~~~~~~~~-~~~~~~~~~  541 (884)
T Consensus       159 tSAk~~~n~V~e~F~~a~  176 (182)
T cd04172         159 CSALQSENSVRDIFHVAT  176 (182)
T ss_pred             CCCCCCCCCHHHHHHHHH
T ss_conf             170789959899999999