HHsearch alignment for GI: 254780787 and conserved domain: cd04173
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.82 E-value=4.5e-08 Score=73.16 Aligned_cols=147 Identities=15% Similarity=0.262 Sum_probs=95.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE---EEECC--CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89862368504467778864222100123100012149---99517--84388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY---QVAYQ--GKNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~---~~~~~--~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
T Consensus 4 iVlvGD~~VGKTsLl~~f~~~~F~~~y----~pTi~~~~~~~~~vd~~~v~L~iWDTAGqE~y~~lr~~yyr~a~~~llv 79 (222)
T cd04173 4 IVVVGDAECGKTALLQVFAKDAYPGSY----VPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCC----CCCEEEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEE
T ss_conf 999898998989999999639999984----7845877899999999999999976888503455678750369899999
Q ss_pred EECCCCCCHHHHHHH----H-HHHH--CCCCEEEECCCCCCCCCCCCHHHHHHHCC---------CCCCCCCCCCCEEEE
Q ss_conf 983667402357778----9-8997--09941561233124433200022100001---------320001234740363
Q gi|254780787|r 461 LAADEEIMPQAIESI----N-HAKA--ADVSIIVAINKIDKLGADPQKVRMSLLKH---------DVFVESMGGDILDVE 524 (884)
Q Consensus 461 v~~~~g~~~qt~e~~----~-~~~~--~~~p~iva~nk~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 524 (884)
T Consensus 80 fdit~---~~SF~~v~~~W~~ei~~~~p~~piiLVGnK~DLR~d-~~-~~~el~~~~~~pVt~eeg~~lA~~~ga~~y~E 154 (222)
T cd04173 80 FDISR---PETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTD-LA-TLRELSKQRLIPVTHEQGTVLAKQVGAVSYVE 154 (222)
T ss_pred EECCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC-HH-HHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 83897---788999999999999985899978999587424568-78-89999855788878999999999769988998
Q ss_pred EEECCCCC-CCCCCCCHH
Q ss_conf 11002477-411221000
Q gi|254780787|r 525 ISAKNNLN-LDKLLDAIL 541 (884)
Q Consensus 525 ~~~~~~~~-~~~~~~~~~ 541 (884)
T Consensus 155 cSAk~~~n~V~evF~~a~ 172 (222)
T cd04173 155 CSSRSSERSVRDVFHVAT 172 (222)
T ss_pred CCCCCCCCCHHHHHHHHH
T ss_conf 884868749899999999