HHsearch alignment for GI: 254780787 and conserved domain: cd04173

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.82  E-value=4.5e-08  Score=73.16  Aligned_cols=147  Identities=15%  Similarity=0.262  Sum_probs=95.0

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE---EEECC--CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             89862368504467778864222100123100012149---99517--84388885166157899986664206805999
Q gi|254780787|r  386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY---QVAYQ--GKNITFLDTPGHAAFYEMRARGARVTDIAVLV  460 (884)
Q Consensus       386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~---~~~~~--~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv  460 (884)
T Consensus         4 iVlvGD~~VGKTsLl~~f~~~~F~~~y----~pTi~~~~~~~~~vd~~~v~L~iWDTAGqE~y~~lr~~yyr~a~~~llv   79 (222)
T cd04173           4 IVVVGDAECGKTALLQVFAKDAYPGSY----VPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC   79 (222)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCCCCC----CCCEEEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEE
T ss_conf             999898998989999999639999984----7845877899999999999999976888503455678750369899999


Q ss_pred             EECCCCCCHHHHHHH----H-HHHH--CCCCEEEECCCCCCCCCCCCHHHHHHHCC---------CCCCCCCCCCCEEEE
Q ss_conf             983667402357778----9-8997--09941561233124433200022100001---------320001234740363
Q gi|254780787|r  461 LAADEEIMPQAIESI----N-HAKA--ADVSIIVAINKIDKLGADPQKVRMSLLKH---------DVFVESMGGDILDVE  524 (884)
Q Consensus       461 v~~~~g~~~qt~e~~----~-~~~~--~~~p~iva~nk~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~  524 (884)
T Consensus        80 fdit~---~~SF~~v~~~W~~ei~~~~p~~piiLVGnK~DLR~d-~~-~~~el~~~~~~pVt~eeg~~lA~~~ga~~y~E  154 (222)
T cd04173          80 FDISR---PETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTD-LA-TLRELSKQRLIPVTHEQGTVLAKQVGAVSYVE  154 (222)
T ss_pred             EECCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC-HH-HHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf             83897---788999999999999985899978999587424568-78-89999855788878999999999769988998


Q ss_pred             EEECCCCC-CCCCCCCHH
Q ss_conf             11002477-411221000
Q gi|254780787|r  525 ISAKNNLN-LDKLLDAIL  541 (884)
Q Consensus       525 ~~~~~~~~-~~~~~~~~~  541 (884)
T Consensus       155 cSAk~~~n~V~evF~~a~  172 (222)
T cd04173         155 CSSRSSERSVRDVFHVAT  172 (222)
T ss_pred             CCCCCCCCCHHHHHHHHH
T ss_conf             884868749899999999