Query gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 884
No_of_seqs 577 out of 5487
Neff 9.5
Searched_HMMs 39220
Date Sun May 29 20:46:02 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780787.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05306 infB translation init 100.0 0 0 1384.2 49.6 596 280-883 243-839 (839)
2 CHL00189 infB translation init 100.0 0 0 1336.1 45.8 579 299-884 183-770 (770)
3 PRK12312 infB translation init 100.0 0 0 1303.1 45.2 582 295-882 27-610 (610)
4 COG0532 InfB Translation initi 100.0 0 0 1086.2 36.7 504 379-884 1-507 (509)
5 KOG1145 consensus 100.0 0 0 1049.2 40.1 581 297-877 57-669 (683)
6 PRK04004 translation initiatio 100.0 0 0 1018.1 30.3 470 379-880 1-556 (592)
7 TIGR00487 IF-2 translation ini 100.0 0 0 816.3 25.1 585 299-884 3-593 (594)
8 KOG1144 consensus 100.0 0 0 819.2 19.3 477 373-875 465-1029(1064)
9 TIGR00491 aIF-2 translation in 100.0 0 0 729.5 15.0 462 389-882 557-1108(1145)
10 cd01887 IF2_eIF5B IF2/eIF5B (i 100.0 5.2E-42 0 305.3 12.4 163 384-546 1-167 (168)
11 TIGR00475 selB selenocysteine- 100.0 4.1E-42 0 306.1 9.8 230 385-615 2-243 (627)
12 TIGR01394 TypA_BipA GTP-bindin 100.0 1.6E-42 0 308.8 7.4 237 386-624 4-288 (609)
13 TIGR01393 lepA GTP-binding pro 100.0 7.3E-42 0 304.3 10.6 200 385-591 5-226 (598)
14 PRK10218 GTP-binding protein; 100.0 8.5E-40 2.1E-44 290.2 12.4 246 385-633 7-288 (607)
15 PRK10512 selenocysteinyl-tRNA- 100.0 5.7E-39 1.4E-43 284.6 13.1 226 385-616 2-235 (615)
16 cd01889 SelB_euk SelB subfamil 100.0 5.4E-39 1.4E-43 284.7 11.5 157 385-541 2-182 (192)
17 cd01891 TypA_BipA TypA (tyrosi 100.0 8.9E-39 2.3E-43 283.2 12.1 153 386-538 5-175 (194)
18 PRK05433 GTP-binding protein L 100.0 8.5E-40 2.2E-44 290.2 6.2 201 385-592 9-229 (601)
19 PRK00049 elongation factor Tu; 100.0 3.5E-38 8.9E-43 279.2 13.0 235 380-617 8-277 (397)
20 PRK12735 elongation factor Tu; 100.0 2E-37 5.1E-42 274.0 15.4 238 380-620 8-279 (396)
21 PRK04000 translation initiatio 100.0 8.5E-38 2.2E-42 276.5 12.8 228 386-618 11-292 (410)
22 PRK12317 elongation factor 1-a 100.0 5E-37 1.3E-41 271.2 14.8 234 382-619 5-290 (426)
23 cd00881 GTP_translation_factor 100.0 2.2E-37 5.5E-42 273.7 12.6 158 386-543 2-185 (189)
24 PRK12736 elongation factor Tu; 100.0 2E-37 5E-42 274.0 11.4 236 380-618 8-275 (394)
25 cd01888 eIF2_gamma eIF2-gamma 100.0 2.9E-37 7.4E-42 272.9 8.9 155 386-542 3-196 (203)
26 cd01884 EF_Tu EF-Tu subfamily. 100.0 1.3E-36 3.4E-41 268.3 11.3 150 386-535 5-173 (195)
27 cd01890 LepA LepA subfamily. 100.0 1.4E-36 3.7E-41 268.1 11.4 152 386-542 3-174 (179)
28 CHL00071 tufA elongation facto 100.0 3.8E-36 9.6E-41 265.2 13.1 237 380-618 8-285 (409)
29 PTZ00141 elongation factor 1 a 100.0 1.4E-35 3.6E-40 261.3 14.7 235 382-620 5-296 (443)
30 PTZ00336 elongation factor 1-a 100.0 9.1E-36 2.3E-40 262.6 13.7 231 386-620 10-298 (449)
31 KOG0462 consensus 100.0 1.9E-36 4.8E-41 267.3 8.2 202 385-593 62-281 (650)
32 PRK13351 elongation factor G; 100.0 3.6E-35 9.1E-40 258.6 14.6 242 385-626 10-380 (687)
33 PRK12739 elongation factor G; 100.0 1.5E-34 3.8E-39 254.3 14.6 242 385-626 12-383 (693)
34 PRK12740 elongation factor G; 100.0 1E-34 2.6E-39 255.4 13.4 238 389-626 1-365 (670)
35 PRK05124 cysN sulfate adenylyl 100.0 4.9E-34 1.3E-38 250.8 14.6 234 386-621 30-311 (475)
36 COG1217 TypA Predicted membran 100.0 1.8E-34 4.7E-39 253.7 11.1 240 385-626 7-282 (603)
37 PTZ00327 eukaryotic translatio 100.0 2.4E-34 6E-39 253.0 11.4 207 381-591 33-288 (460)
38 PRK00007 elongation factor G; 100.0 6.9E-34 1.8E-38 249.8 13.6 242 385-626 12-385 (693)
39 cd04166 CysN_ATPS CysN_ATPS su 100.0 8.1E-34 2.1E-38 249.3 12.7 152 386-537 2-186 (208)
40 cd01883 EF1_alpha Eukaryotic e 100.0 4.6E-33 1.2E-37 244.1 13.0 150 386-535 2-195 (219)
41 cd04171 SelB SelB subfamily. 100.0 5.1E-33 1.3E-37 243.9 11.9 155 385-541 2-162 (164)
42 COG0480 FusA Translation elong 100.0 1E-32 2.6E-37 241.8 13.2 244 383-626 10-382 (697)
43 pfam00009 GTP_EFTU Elongation 100.0 8.7E-33 2.2E-37 242.2 11.4 161 382-542 2-181 (185)
44 COG0481 LepA Membrane GTPase L 100.0 5.2E-33 1.3E-37 243.8 8.9 201 385-592 11-231 (603)
45 COG5256 TEF1 Translation elong 100.0 6E-32 1.5E-36 236.5 13.6 228 386-618 10-294 (428)
46 PRK05506 bifunctional sulfate 100.0 1.4E-31 3.6E-36 233.9 14.6 235 386-621 10-290 (613)
47 cd04167 Snu114p Snu114p subfam 100.0 3.5E-32 9.1E-37 238.1 11.4 114 385-498 2-139 (213)
48 cd01885 EF2 EF2 (for archaea a 100.0 3.9E-32 9.9E-37 237.8 11.5 113 385-497 2-140 (222)
49 COG0050 TufB GTPases - transla 100.0 1.2E-31 3E-36 234.5 10.3 203 386-590 15-244 (394)
50 COG3276 SelB Selenocysteine-sp 100.0 1.3E-31 3.4E-36 234.1 10.4 226 385-617 2-233 (447)
51 PRK00741 prfC peptide chain re 100.0 1.6E-30 4E-35 226.8 14.1 125 385-509 12-158 (526)
52 PRK07560 elongation factor EF- 100.0 1.3E-30 3.3E-35 227.4 11.7 242 385-626 22-365 (730)
53 KOG0460 consensus 100.0 4.7E-31 1.2E-35 230.4 9.1 208 386-593 57-292 (449)
54 cd04168 TetM_like Tet(M)-like 100.0 1.3E-30 3.4E-35 227.3 11.1 124 386-509 2-143 (237)
55 TIGR00483 EF-1_alpha translati 100.0 1E-30 2.7E-35 228.0 9.0 233 385-618 9-307 (445)
56 cd04165 GTPBP1_like GTPBP1-lik 100.0 4.2E-30 1.1E-34 223.9 10.8 155 386-540 2-218 (224)
57 cd01886 EF-G Elongation factor 99.9 3.8E-27 9.6E-32 203.7 11.8 125 386-510 2-144 (270)
58 cd04170 EF-G_bact Elongation f 99.9 4.5E-27 1.1E-31 203.2 11.5 125 386-510 2-144 (268)
59 cd04169 RF3 RF3 subfamily. Pe 99.9 5.9E-27 1.5E-31 202.3 11.4 125 385-509 4-150 (267)
60 cd03692 mtIF2_IVc mtIF2_IVc: t 99.9 4.2E-26 1.1E-30 196.5 9.4 84 791-874 1-84 (84)
61 TIGR00485 EF-Tu translation el 99.9 5.6E-26 1.4E-30 195.7 8.2 208 386-593 15-248 (394)
62 KOG0461 consensus 99.9 1.6E-25 4E-30 192.6 10.3 216 385-603 9-251 (522)
63 COG5257 GCD11 Translation init 99.9 7.9E-26 2E-30 194.6 7.9 202 385-590 12-253 (415)
64 pfam11987 IF-2 Translation-ini 99.9 1.7E-25 4.3E-30 192.4 8.7 98 678-775 12-109 (109)
65 COG2895 CysN GTPases - Sulfate 99.9 1.3E-24 3.4E-29 186.2 12.1 233 386-621 9-289 (431)
66 KOG0458 consensus 99.9 9.7E-25 2.5E-29 187.2 11.2 216 385-604 179-455 (603)
67 KOG0465 consensus 99.9 1.2E-24 2.9E-29 186.7 11.1 122 385-506 41-180 (721)
68 TIGR00484 EF-G translation elo 99.9 3.9E-26 9.8E-31 196.8 2.1 248 385-633 12-398 (705)
69 KOG0467 consensus 99.9 5E-25 1.3E-29 189.2 7.6 182 385-575 11-208 (887)
70 TIGR02034 CysN sulfate adenyly 99.9 9.3E-24 2.4E-28 180.5 8.1 247 386-635 3-302 (411)
71 COG5258 GTPBP1 GTPase [General 99.9 1.8E-22 4.6E-27 171.6 9.3 209 385-595 119-387 (527)
72 cd01895 EngA2 EngA2 subfamily. 99.8 1.6E-20 4.2E-25 158.3 12.3 158 383-541 2-171 (174)
73 cd04163 Era Era subfamily. Er 99.8 2.9E-20 7.4E-25 156.6 12.0 156 381-541 1-165 (168)
74 KOG0464 consensus 99.8 1.7E-21 4.3E-26 165.1 2.9 223 385-607 39-387 (753)
75 TIGR00490 aEF-2 translation el 99.8 3.5E-20 9E-25 156.0 8.9 242 385-626 21-364 (724)
76 KOG0459 consensus 99.8 2.6E-20 6.7E-25 156.9 8.2 236 382-620 78-370 (501)
77 cd01876 YihA_EngB The YihA (En 99.8 1.2E-19 3E-24 152.4 11.1 151 386-541 2-167 (170)
78 cd00880 Era_like Era (E. coli 99.8 1.4E-19 3.6E-24 151.9 10.7 151 388-541 1-160 (163)
79 COG4108 PrfC Peptide chain rel 99.8 1.1E-19 2.8E-24 152.6 9.1 124 382-505 11-156 (528)
80 PRK00454 engB GTPase EngB; Rev 99.8 2.7E-18 6.8E-23 143.1 10.8 155 383-542 24-193 (196)
81 TIGR03598 GTPase_YsxC ribosome 99.8 4.2E-18 1.1E-22 141.8 11.6 148 382-534 17-179 (179)
82 KOG0468 consensus 99.8 9.6E-19 2.5E-23 146.2 8.4 116 380-495 125-262 (971)
83 PRK00089 era GTP-binding prote 99.8 1.5E-17 3.7E-22 138.1 12.3 161 378-544 3-172 (296)
84 cd01894 EngA1 EngA1 subfamily. 99.8 1E-17 2.6E-22 139.1 11.3 145 387-541 1-154 (157)
85 PRK00093 engA GTP-binding prot 99.7 3.8E-16 9.7E-21 128.4 18.2 149 384-542 2-160 (438)
86 PRK09518 bifunctional cytidyla 99.7 5.2E-16 1.3E-20 127.5 17.7 151 381-542 277-437 (714)
87 PRK03003 engA GTP-binding prot 99.7 3E-16 7.7E-21 129.1 14.2 152 380-542 35-196 (474)
88 TIGR00503 prfC peptide chain r 99.7 6.3E-18 1.6E-22 140.6 5.3 121 385-505 13-155 (530)
89 KOG0469 consensus 99.7 9.7E-18 2.5E-22 139.3 5.1 110 386-495 22-163 (842)
90 PRK04213 GTP-binding protein; 99.7 2.1E-16 5.2E-21 130.2 11.6 155 383-543 1-182 (195)
91 pfam10662 PduV-EutP Ethanolami 99.7 6.6E-17 1.7E-21 133.6 7.7 134 386-540 4-141 (143)
92 cd04164 trmE TrmE (MnmE, ThdF, 99.7 2.9E-16 7.5E-21 129.2 10.2 142 386-542 4-154 (157)
93 cd04155 Arl3 Arl3 subfamily. 99.7 4E-16 1E-20 128.2 10.5 156 380-541 11-171 (173)
94 TIGR03594 GTPase_EngA ribosome 99.7 1.8E-15 4.5E-20 123.9 13.2 147 385-542 1-157 (429)
95 PRK03003 engA GTP-binding prot 99.7 2.2E-15 5.5E-20 123.2 12.1 159 381-542 209-379 (474)
96 pfam02421 FeoB_N Ferrous iron 99.7 8.8E-16 2.3E-20 125.9 10.1 148 386-542 2-157 (188)
97 KOG0466 consensus 99.7 6.5E-17 1.6E-21 133.7 3.8 206 381-590 34-292 (466)
98 PRK00093 engA GTP-binding prot 99.6 5.1E-15 1.3E-19 120.7 13.2 161 379-541 168-341 (438)
99 cd01878 HflX HflX subfamily. 99.6 2.4E-15 6.2E-20 122.9 11.4 151 379-541 37-201 (204)
100 pfam00025 Arf ADP-ribosylation 99.6 1.6E-15 4.1E-20 124.1 9.5 149 385-541 16-171 (174)
101 cd01879 FeoB Ferrous iron tran 99.6 2.2E-15 5.7E-20 123.1 10.0 146 388-542 1-154 (158)
102 cd01897 NOG NOG1 is a nucleola 99.6 7.2E-15 1.8E-19 119.7 12.0 150 384-541 1-164 (168)
103 TIGR03594 GTPase_EngA ribosome 99.6 9.6E-15 2.4E-19 118.8 12.4 161 379-542 168-341 (429)
104 cd00878 Arf_Arl Arf (ADP-ribos 99.6 3.7E-15 9.4E-20 121.7 9.0 150 386-541 2-156 (158)
105 cd03702 IF2_mtIF2_II This fami 99.6 6.8E-16 1.7E-20 126.7 4.5 94 557-650 1-94 (95)
106 COG1159 Era GTPase [General fu 99.6 1.5E-14 3.8E-19 117.5 10.9 160 379-543 2-170 (298)
107 PRK09518 bifunctional cytidyla 99.6 2.1E-14 5.3E-19 116.5 11.4 157 381-541 450-619 (714)
108 cd04154 Arl2 Arl2 subfamily. 99.6 2.1E-14 5.4E-19 116.5 10.5 156 378-541 9-171 (173)
109 cd04160 Arfrp1 Arfrp1 subfamil 99.6 2.3E-14 5.7E-19 116.3 10.0 155 386-541 2-165 (167)
110 COG1160 Predicted GTPases [Gen 99.6 9.9E-14 2.5E-18 111.9 12.8 151 384-544 4-164 (444)
111 COG2229 Predicted GTPase [Gene 99.6 7.2E-14 1.8E-18 112.8 11.2 160 377-543 4-176 (187)
112 cd03701 IF2_IF5B_II IF2_IF5B_I 99.5 6.1E-15 1.6E-19 120.1 5.1 94 557-650 1-94 (95)
113 cd01898 Obg Obg subfamily. Th 99.5 5.2E-14 1.3E-18 113.8 9.6 148 386-541 3-167 (170)
114 KOG0463 consensus 99.5 1.8E-14 4.7E-19 116.9 6.1 207 386-594 136-405 (641)
115 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.5 1.4E-13 3.5E-18 110.9 9.4 151 385-541 17-172 (174)
116 TIGR00231 small_GTP small GTP- 99.5 6.4E-14 1.6E-18 113.2 7.2 159 382-540 2-184 (186)
117 cd04151 Arl1 Arl1 subfamily. 99.5 2.9E-13 7.5E-18 108.7 9.5 150 386-541 2-156 (158)
118 cd04150 Arf1_5_like Arf1-Arf5- 99.5 4.3E-13 1.1E-17 107.5 9.8 150 386-541 3-157 (159)
119 cd04149 Arf6 Arf6 subfamily. 99.5 3.2E-13 8.2E-18 108.4 9.2 152 384-541 10-166 (168)
120 COG1160 Predicted GTPases [Gen 99.5 3.6E-13 9.3E-18 108.0 9.2 161 382-543 177-349 (444)
121 cd04159 Arl10_like Arl10-like 99.4 8.6E-13 2.2E-17 105.5 10.0 146 386-541 2-157 (159)
122 cd04157 Arl6 Arl6 subfamily. 99.4 1.1E-12 2.8E-17 104.8 10.3 149 386-540 2-159 (162)
123 pfam00071 Ras Ras family. Incl 99.4 1.3E-12 3.4E-17 104.1 9.7 147 386-541 2-157 (162)
124 cd00882 Ras_like_GTPase Ras-li 99.4 8E-13 2.1E-17 105.7 8.4 149 388-541 1-156 (157)
125 cd01881 Obg_like The Obg-like 99.4 1.5E-12 3.8E-17 103.8 9.7 147 388-541 1-173 (176)
126 PTZ00133 ADP-ribosylation fact 99.4 2E-12 5.1E-17 103.0 9.9 154 382-541 16-174 (182)
127 smart00177 ARF ARF-like small 99.4 2E-12 5E-17 103.0 9.1 150 386-541 16-170 (175)
128 KOG1143 consensus 99.4 4.2E-13 1.1E-17 107.6 4.9 224 368-594 155-440 (591)
129 cd04156 ARLTS1 ARLTS1 subfamil 99.4 4.7E-12 1.2E-16 100.4 9.9 149 386-541 2-158 (160)
130 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.4 1.8E-12 4.5E-17 103.3 7.5 149 386-541 6-166 (183)
131 cd04158 ARD1 ARD1 subfamily. 99.4 6.5E-12 1.7E-16 99.4 10.2 151 386-541 2-157 (169)
132 cd00879 Sar1 Sar1 subfamily. 99.4 6.3E-12 1.6E-16 99.5 9.9 155 381-540 17-186 (190)
133 TIGR03156 GTP_HflX GTP-binding 99.4 1.3E-11 3.3E-16 97.4 11.3 146 382-541 188-348 (351)
134 cd01896 DRG The developmentall 99.3 1.4E-11 3.5E-16 97.3 10.8 141 386-541 3-222 (233)
135 COG0218 Predicted GTPase [Gene 99.3 1.4E-11 3.6E-16 97.2 10.5 156 382-544 23-196 (200)
136 pfam01926 MMR_HSR1 GTPase of u 99.3 1.4E-11 3.6E-16 97.2 9.7 97 395-491 1-106 (106)
137 cd04161 Arl2l1_Arl13_like Arl2 99.3 2.7E-11 6.9E-16 95.2 11.1 150 386-540 2-164 (167)
138 cd00154 Rab Rab family. Rab G 99.3 2.1E-11 5.4E-16 95.9 10.0 146 386-540 3-157 (159)
139 cd01862 Rab7 Rab7 subfamily. 99.3 3.1E-11 7.9E-16 94.8 10.3 144 386-541 3-163 (172)
140 cd00157 Rho Rho (Ras homology) 99.3 1.3E-11 3.4E-16 97.3 8.3 147 386-540 3-168 (171)
141 cd04147 Ras_dva Ras-dva subfam 99.3 3E-11 7.7E-16 94.9 8.3 150 386-544 2-162 (198)
142 cd01870 RhoA_like RhoA-like su 99.2 4.3E-11 1.1E-15 93.8 8.7 148 386-541 4-171 (175)
143 smart00178 SAR Sar1p-like memb 99.2 1.4E-10 3.5E-15 90.4 11.3 155 381-540 15-180 (184)
144 cd01874 Cdc42 Cdc42 subfamily. 99.2 4.9E-11 1.3E-15 93.4 8.9 154 386-543 4-173 (175)
145 cd04116 Rab9 Rab9 subfamily. 99.2 3.4E-11 8.8E-16 94.5 8.1 143 386-541 8-167 (170)
146 smart00173 RAS Ras subfamily o 99.2 7E-11 1.8E-15 92.4 9.2 143 386-541 3-158 (164)
147 cd01863 Rab18 Rab18 subfamily. 99.2 4.8E-11 1.2E-15 93.5 8.3 149 386-541 3-158 (161)
148 cd04162 Arl9_Arfrp2_like Arl9/ 99.2 2E-10 5E-15 89.3 11.4 151 386-541 2-155 (164)
149 cd04132 Rho4_like Rho4-like su 99.2 4.2E-11 1.1E-15 93.9 8.0 152 386-542 3-164 (187)
150 cd04130 Wrch_1 Wrch-1 subfamil 99.2 6.6E-11 1.7E-15 92.6 8.5 154 386-542 3-171 (173)
151 PRK11058 putative GTPase HflX; 99.2 2.8E-10 7.2E-15 88.2 11.5 151 381-542 195-359 (426)
152 cd00876 Ras Ras family. The R 99.2 9.8E-11 2.5E-15 91.4 8.9 143 386-541 2-157 (160)
153 smart00175 RAB Rab subfamily o 99.2 5.9E-11 1.5E-15 92.9 7.8 147 386-541 3-158 (164)
154 cd04124 RabL2 RabL2 subfamily. 99.2 1.4E-10 3.6E-15 90.3 9.5 147 386-541 3-154 (161)
155 cd04105 SR_beta Signal recogni 99.2 3.6E-10 9.1E-15 87.6 11.4 125 384-509 1-136 (203)
156 cd04138 H_N_K_Ras_like H-Ras/N 99.2 1E-10 2.6E-15 91.2 8.6 142 386-541 4-158 (162)
157 cd04128 Spg1 Spg1p. Spg1p (se 99.2 2.6E-10 6.6E-15 88.5 10.6 151 386-541 3-162 (182)
158 cd01893 Miro1 Miro1 subfamily. 99.2 1.5E-10 3.8E-15 90.1 9.0 150 386-541 3-160 (166)
159 cd04139 RalA_RalB RalA/RalB su 99.2 1.2E-10 2.9E-15 90.9 8.4 143 386-541 3-158 (164)
160 cd04135 Tc10 TC10 subfamily. 99.2 2E-10 5.2E-15 89.2 9.5 152 386-541 3-170 (174)
161 pfam09439 SRPRB Signal recogni 99.2 4.1E-10 1E-14 87.1 11.0 127 382-509 2-139 (181)
162 cd04119 RJL RJL (RabJ-Like) su 99.2 2E-10 5.1E-15 89.3 9.3 150 386-541 3-163 (168)
163 cd01864 Rab19 Rab19 subfamily. 99.2 1.4E-10 3.5E-15 90.4 8.3 144 386-541 6-162 (165)
164 cd04134 Rho3 Rho3 subfamily. 99.2 2.7E-10 6.9E-15 88.4 9.8 156 386-541 3-170 (189)
165 cd04176 Rap2 Rap2 subgroup. T 99.2 1.8E-10 4.7E-15 89.5 8.7 146 386-541 4-159 (163)
166 cd04177 RSR1 RSR1 subgroup. R 99.2 1.7E-10 4.2E-15 89.8 8.5 144 386-541 4-160 (168)
167 smart00174 RHO Rho (Ras homolo 99.2 1.2E-10 3E-15 90.8 7.7 152 386-541 1-168 (174)
168 cd04136 Rap_like Rap-like subf 99.2 3.3E-10 8.3E-15 87.8 9.7 143 386-541 4-159 (163)
169 cd04123 Rab21 Rab21 subfamily. 99.2 1.3E-10 3.4E-15 90.5 7.6 150 386-541 3-158 (162)
170 cd01860 Rab5_related Rab5-rela 99.2 2.4E-10 6.2E-15 88.7 8.9 143 386-541 4-159 (163)
171 cd01868 Rab11_like Rab11-like. 99.2 1.7E-10 4.2E-15 89.8 8.0 146 386-541 6-161 (165)
172 cd04113 Rab4 Rab4 subfamily. 99.2 1.5E-10 3.8E-15 90.2 7.7 149 386-540 3-157 (161)
173 cd01867 Rab8_Rab10_Rab13_like 99.2 1.9E-10 4.9E-15 89.4 8.2 146 386-541 6-161 (167)
174 cd04112 Rab26 Rab26 subfamily. 99.1 1.6E-10 4E-15 90.0 7.7 144 386-541 3-159 (191)
175 cd04137 RheB Rheb (Ras Homolog 99.1 2.3E-10 5.8E-15 88.9 8.3 145 386-541 4-159 (180)
176 PTZ00132 GTP-binding nuclear p 99.1 3.5E-10 8.9E-15 87.6 9.3 140 386-540 9-160 (209)
177 cd04145 M_R_Ras_like M-Ras/R-R 99.1 2.4E-10 6.1E-15 88.8 8.4 146 386-541 5-160 (164)
178 cd00877 Ran Ran (Ras-related n 99.1 8E-10 2E-14 85.2 11.0 141 386-541 3-155 (166)
179 cd04125 RabA_like RabA-like su 99.1 3.2E-10 8.1E-15 87.9 8.6 150 386-541 3-158 (188)
180 cd04144 Ras2 Ras2 subfamily. 99.1 3.8E-10 9.6E-15 87.4 8.6 143 386-541 2-159 (190)
181 PRK05291 trmE tRNA modificatio 99.1 1.1E-09 2.8E-14 84.3 10.8 141 380-541 212-363 (445)
182 cd04127 Rab27A Rab27a subfamil 99.1 8.2E-10 2.1E-14 85.1 9.9 143 386-541 7-173 (180)
183 cd01866 Rab2 Rab2 subfamily. 99.1 2.3E-10 5.9E-15 88.8 7.1 146 386-541 7-162 (168)
184 cd04107 Rab32_Rab38 Rab38/Rab3 99.1 3.1E-10 7.8E-15 88.0 7.6 146 386-541 3-164 (201)
185 KOG0052 consensus 99.1 1.9E-11 4.8E-16 96.3 1.2 112 384-496 8-156 (391)
186 cd04118 Rab24 Rab24 subfamily. 99.1 7E-10 1.8E-14 85.6 9.0 148 386-541 3-162 (193)
187 cd04175 Rap1 Rap1 subgroup. T 99.1 5.4E-10 1.4E-14 86.3 8.4 146 386-541 4-159 (164)
188 cd01871 Rac1_like Rac1-like su 99.1 7.1E-10 1.8E-14 85.5 9.0 149 386-541 4-171 (174)
189 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.1 3.8E-10 9.6E-15 87.4 7.2 145 386-541 5-160 (172)
190 cd04108 Rab36_Rab34 Rab34/Rab3 99.1 6.5E-10 1.7E-14 85.8 8.2 148 386-541 3-161 (170)
191 cd04126 Rab20 Rab20 subfamily. 99.1 9.2E-10 2.3E-14 84.7 8.7 148 386-541 3-186 (220)
192 cd04110 Rab35 Rab35 subfamily. 99.1 6.1E-10 1.6E-14 86.0 7.5 147 386-541 9-163 (199)
193 cd04143 Rhes_like Rhes_like su 99.1 7.5E-10 1.9E-14 85.3 8.0 154 386-548 3-174 (247)
194 cd04121 Rab40 Rab40 subfamily. 99.1 9E-10 2.3E-14 84.8 8.3 147 386-541 9-163 (189)
195 cd04122 Rab14 Rab14 subfamily. 99.1 4E-10 1E-14 87.2 6.5 143 386-541 5-160 (166)
196 COG0486 ThdF Predicted GTPase 99.1 9.1E-09 2.3E-13 77.9 13.5 156 376-544 209-375 (454)
197 cd04117 Rab15 Rab15 subfamily. 99.1 5.6E-10 1.4E-14 86.2 7.1 143 386-541 3-158 (161)
198 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.1 4.3E-10 1.1E-14 87.0 6.5 146 386-541 5-160 (166)
199 cd01892 Miro2 Miro2 subfamily. 99.1 1.4E-09 3.5E-14 83.6 9.1 148 386-544 7-165 (169)
200 cd04101 RabL4 RabL4 (Rab-like4 99.1 2.2E-09 5.6E-14 82.1 10.1 148 386-541 3-160 (164)
201 cd04129 Rho2 Rho2 subfamily. 99.1 5.8E-10 1.5E-14 86.1 7.1 148 386-541 4-169 (187)
202 cd04140 ARHI_like ARHI subfami 99.1 7.4E-10 1.9E-14 85.4 7.6 146 386-541 4-161 (165)
203 cd01875 RhoG RhoG subfamily. 99.0 2E-09 5.2E-14 82.4 9.9 155 385-541 5-173 (191)
204 cd04120 Rab12 Rab12 subfamily. 99.0 8.1E-10 2.1E-14 85.1 7.6 144 386-541 3-159 (202)
205 cd01882 BMS1 Bms1. Bms1 is an 99.0 3.8E-09 9.7E-14 80.5 11.0 147 375-530 31-181 (225)
206 cd04131 Rnd Rnd subfamily. Th 99.0 1.5E-09 3.8E-14 83.3 8.7 147 386-541 4-172 (178)
207 cd04106 Rab23_lke Rab23-like s 99.0 9.7E-10 2.5E-14 84.6 7.5 146 386-541 3-159 (162)
208 cd04114 Rab30 Rab30 subfamily. 99.0 6.8E-10 1.7E-14 85.6 6.7 143 386-541 10-165 (169)
209 cd01861 Rab6 Rab6 subfamily. 99.0 1.8E-09 4.6E-14 82.7 8.6 150 386-541 3-158 (161)
210 cd01865 Rab3 Rab3 subfamily. 99.0 7.1E-10 1.8E-14 85.5 6.3 146 386-541 4-159 (165)
211 cd04133 Rop_like Rop subfamily 99.0 2.2E-09 5.7E-14 82.1 8.8 149 386-541 4-169 (176)
212 COG2262 HflX GTPases [General 99.0 6.5E-09 1.7E-13 78.9 10.7 150 381-542 190-353 (411)
213 TIGR00450 thdF tRNA modificati 99.0 6E-09 1.5E-13 79.2 9.5 188 307-495 143-346 (473)
214 cd04115 Rab33B_Rab33A Rab33B/R 99.0 3.8E-09 9.7E-14 80.5 8.3 143 386-541 5-165 (170)
215 cd04142 RRP22 RRP22 subfamily. 99.0 6.8E-09 1.7E-13 78.8 9.6 151 386-544 3-173 (198)
216 PRK12299 obgE GTPase ObgE; Rev 98.9 5.9E-09 1.5E-13 79.2 8.8 145 386-541 161-323 (334)
217 COG1100 GTPase SAR1 and relate 98.9 9.4E-09 2.4E-13 77.8 9.7 160 385-544 7-184 (219)
218 cd04146 RERG_RasL11_like RERG/ 98.9 5.8E-09 1.5E-13 79.2 8.6 145 386-541 2-160 (165)
219 PRK09554 feoB ferrous iron tra 98.9 6.1E-09 1.5E-13 79.1 8.2 150 383-541 3-164 (772)
220 cd04111 Rab39 Rab39 subfamily. 98.9 6.3E-09 1.6E-13 79.0 8.0 146 386-541 5-162 (211)
221 cd04109 Rab28 Rab28 subfamily. 98.9 1.2E-08 3.1E-13 77.1 9.3 146 386-541 3-162 (215)
222 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.9 1.3E-08 3.4E-13 76.8 9.0 147 386-541 8-176 (182)
223 cd04148 RGK RGK subfamily. Th 98.9 1E-08 2.6E-13 77.6 8.3 150 386-542 3-160 (221)
224 COG0370 FeoB Fe2+ transport sy 98.9 2.5E-08 6.3E-13 75.0 9.9 152 384-544 4-163 (653)
225 smart00176 RAN Ran (Ras-relate 98.9 1.2E-08 3.2E-13 77.0 8.0 141 389-540 1-149 (200)
226 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.8 2.7E-08 6.8E-13 74.7 9.0 149 386-543 16-186 (232)
227 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.8 4.5E-08 1.2E-12 73.2 9.7 147 386-541 4-172 (222)
228 pfam08477 Miro Miro-like prote 98.8 6.8E-08 1.7E-12 72.0 10.0 108 386-493 2-118 (118)
229 COG5192 BMS1 GTP-binding prote 98.8 1.2E-07 3E-12 70.3 10.7 105 381-494 66-175 (1077)
230 PRK12298 obgE GTPase ObgE; Rev 98.8 9.6E-08 2.4E-12 70.9 9.9 145 386-542 162-330 (380)
231 PRK12297 obgE GTPase ObgE; Rev 98.7 1.2E-07 3.1E-12 70.2 9.0 144 385-541 160-325 (429)
232 KOG1191 consensus 98.7 1.5E-07 3.9E-12 69.5 9.4 162 382-547 267-452 (531)
233 cd04103 Centaurin_gamma Centau 98.7 1.3E-07 3.4E-12 70.0 7.9 144 386-541 3-155 (158)
234 COG1084 Predicted GTPase [Gene 98.6 2.9E-07 7.4E-12 67.6 9.0 153 379-540 164-331 (346)
235 KOG2486 consensus 98.6 4E-07 1E-11 66.7 9.7 156 380-540 133-311 (320)
236 cd01342 Translation_Factor_II_ 98.6 7.6E-08 1.9E-12 71.6 5.9 81 792-873 2-82 (83)
237 PRK12296 obgE GTPase ObgE; Rev 98.6 5.2E-07 1.3E-11 65.9 9.9 142 386-540 162-335 (495)
238 KOG1423 consensus 98.6 8.6E-07 2.2E-11 64.4 10.7 177 379-557 68-283 (379)
239 TIGR00491 aIF-2 translation in 98.6 1.5E-08 3.8E-13 76.5 1.4 144 687-848 441-605 (1145)
240 TIGR00437 feoB ferrous iron tr 98.6 4.2E-08 1.1E-12 73.4 3.4 143 390-541 1-152 (733)
241 KOG0410 consensus 98.6 4E-07 1E-11 66.7 8.2 143 382-541 177-337 (410)
242 KOG1489 consensus 98.6 5.8E-07 1.5E-11 65.6 9.0 144 385-541 198-363 (366)
243 KOG0076 consensus 98.6 2.8E-07 7E-12 67.8 7.3 152 386-541 20-183 (197)
244 cd04102 RabL3 RabL3 (Rab-like3 98.5 3.6E-07 9.2E-12 67.0 7.7 113 386-498 3-145 (202)
245 KOG1532 consensus 98.5 2.1E-08 5.3E-13 75.5 0.8 166 377-543 13-262 (366)
246 PRK12735 elongation factor Tu; 98.5 1.2E-05 3.2E-10 56.5 14.5 108 760-873 185-296 (396)
247 TIGR02528 EutP ethanolamine ut 98.5 1E-07 2.7E-12 70.7 3.8 135 386-540 3-142 (144)
248 KOG0394 consensus 98.5 8.8E-07 2.2E-11 64.4 8.4 160 382-548 7-181 (210)
249 KOG0092 consensus 98.4 6.2E-07 1.6E-11 65.4 6.6 149 381-542 3-164 (200)
250 cd01873 RhoBTB RhoBTB subfamil 98.4 1E-06 2.6E-11 63.9 7.6 152 386-541 5-192 (195)
251 PRK00049 elongation factor Tu; 98.4 1.2E-05 3E-10 56.6 12.7 105 763-873 189-297 (397)
252 PTZ00099 rab6; Provisional 98.4 6.7E-07 1.7E-11 65.1 6.3 108 429-542 28-139 (176)
253 pfam00350 Dynamin_N Dynamin fa 98.4 2E-06 5E-11 61.9 8.4 107 386-492 1-168 (168)
254 PRK12317 elongation factor 1-a 98.4 5.2E-06 1.3E-10 59.1 9.9 90 781-873 217-308 (426)
255 COG1163 DRG Predicted GTPase [ 98.4 1.3E-06 3.2E-11 63.3 6.8 84 383-468 63-155 (365)
256 KOG0070 consensus 98.4 1.1E-06 2.7E-11 63.8 6.1 149 386-541 20-174 (181)
257 KOG0078 consensus 98.3 4.8E-06 1.2E-10 59.3 8.2 150 383-539 12-168 (207)
258 KOG0098 consensus 98.3 6.1E-06 1.6E-10 58.6 8.4 143 386-540 9-163 (216)
259 PRK12736 elongation factor Tu; 98.3 6.8E-06 1.7E-10 58.3 8.3 106 764-873 187-294 (394)
260 KOG0090 consensus 98.2 3.2E-06 8.1E-11 60.5 5.4 125 382-509 37-172 (238)
261 KOG0077 consensus 98.2 9.9E-06 2.5E-10 57.2 7.5 115 383-500 20-139 (193)
262 cd03693 EF1_alpha_II EF1_alpha 98.2 5.1E-06 1.3E-10 59.2 5.9 80 792-874 6-87 (91)
263 cd03697 EFTU_II EFTU_II: Elong 98.1 9.5E-06 2.4E-10 57.3 6.6 80 793-873 3-84 (87)
264 pfam04760 IF2_N Translation in 98.1 2E-06 5.2E-11 61.8 2.9 52 305-356 1-52 (52)
265 COG0536 Obg Predicted GTPase [ 98.1 3.6E-05 9.2E-10 53.3 9.1 146 386-541 162-329 (369)
266 KOG0084 consensus 98.1 3.4E-05 8.6E-10 53.5 8.7 144 386-541 12-168 (205)
267 COG3276 SelB Selenocysteine-sp 98.1 2.8E-05 7.1E-10 54.1 8.1 107 765-874 145-254 (447)
268 PTZ00336 elongation factor 1-a 98.0 9.8E-05 2.5E-09 50.3 10.4 88 783-873 226-315 (449)
269 KOG0073 consensus 98.0 8.3E-05 2.1E-09 50.8 9.7 149 385-540 18-173 (185)
270 cd03696 selB_II selB_II: this 98.0 1.5E-05 3.8E-10 55.9 5.4 78 793-873 3-82 (83)
271 CHL00071 tufA elongation facto 97.9 2.3E-05 5.8E-10 54.7 5.9 107 761-873 194-304 (409)
272 PTZ00141 elongation factor 1 a 97.9 2.4E-05 6.1E-10 54.5 5.8 81 790-873 231-313 (443)
273 KOG1954 consensus 97.9 8E-05 2E-09 50.9 8.4 107 382-495 57-224 (532)
274 PRK10512 selenocysteinyl-tRNA- 97.9 8.3E-05 2.1E-09 50.8 8.5 25 381-405 139-163 (615)
275 cd01856 YlqF YlqF. Proteins o 97.9 9.8E-05 2.5E-09 50.4 8.6 95 438-542 3-98 (171)
276 KOG0094 consensus 97.9 0.00021 5.4E-09 48.1 10.1 153 381-541 20-181 (221)
277 cd03698 eRF3_II_like eRF3_II_l 97.9 3.8E-05 9.6E-10 53.2 6.0 78 792-873 3-82 (83)
278 cd01859 MJ1464 MJ1464. This f 97.9 3.8E-05 9.8E-10 53.1 6.0 92 443-542 2-93 (156)
279 COG4917 EutP Ethanolamine util 97.8 3.3E-05 8.4E-10 53.6 5.0 133 386-540 4-141 (148)
280 KOG0395 consensus 97.8 4.9E-05 1.2E-09 52.4 5.8 153 383-542 3-162 (196)
281 PRK13768 GTPase; Provisional 97.8 5.7E-05 1.4E-09 52.0 5.4 154 385-541 4-243 (253)
282 pfam03144 GTP_EFTU_D2 Elongati 97.7 4.8E-05 1.2E-09 52.5 4.8 67 805-872 1-69 (70)
283 cd03694 GTPBP_II Domain II of 97.7 6E-05 1.5E-09 51.8 4.6 79 794-873 4-86 (87)
284 pfam03308 ArgK ArgK protein. T 97.7 0.00032 8.3E-09 46.8 8.2 155 381-544 27-229 (267)
285 cd04104 p47_IIGP_like p47 (47- 97.6 0.00032 8.2E-09 46.8 7.9 111 386-499 4-124 (197)
286 TIGR02729 Obg_CgtA GTP-binding 97.6 0.00052 1.3E-08 45.4 8.9 107 386-496 161-296 (296)
287 COG1703 ArgK Putative periplas 97.6 0.00034 8.6E-09 46.7 7.9 161 379-546 47-255 (323)
288 cd04089 eRF3_II eRF3_II: domai 97.6 0.00014 3.6E-09 49.3 5.9 77 792-873 3-81 (82)
289 KOG0460 consensus 97.6 0.00012 3E-09 49.8 5.4 104 764-871 231-336 (449)
290 PRK04000 translation initiatio 97.6 0.0002 5.2E-09 48.2 6.5 103 767-872 189-313 (410)
291 cd01859 MJ1464 MJ1464. This f 97.6 0.00011 2.8E-09 50.0 5.0 55 382-439 100-155 (156)
292 TIGR00436 era GTP-binding prot 97.6 0.00029 7.4E-09 47.1 6.9 154 385-541 2-166 (278)
293 PRK05124 cysN sulfate adenylyl 97.6 0.00024 6.2E-09 47.6 6.5 82 790-874 245-326 (475)
294 pfam03029 ATP_bind_1 Conserved 97.5 0.00013 3.3E-09 49.5 4.5 111 431-541 91-229 (234)
295 cd03695 CysN_NodQ_II CysN_NodQ 97.5 0.00024 6.1E-09 47.7 5.7 79 793-874 3-81 (81)
296 PRK09435 arginine/ornithine tr 97.5 0.001 2.6E-08 43.4 8.7 157 381-544 47-252 (325)
297 KOG0075 consensus 97.5 0.00057 1.4E-08 45.1 7.3 151 386-543 23-180 (186)
298 KOG0095 consensus 97.5 0.00063 1.6E-08 44.8 7.4 148 386-541 10-165 (213)
299 KOG1144 consensus 97.4 0.00021 5.4E-09 48.1 4.2 279 453-745 537-856 (1064)
300 KOG0093 consensus 97.4 0.00041 1E-08 46.1 5.6 151 385-541 23-179 (193)
301 cd01856 YlqF YlqF. Proteins o 97.3 0.00029 7.5E-09 47.1 4.3 56 381-439 113-169 (171)
302 KOG0072 consensus 97.3 0.00054 1.4E-08 45.3 5.5 150 385-540 20-174 (182)
303 KOG0079 consensus 97.3 0.0013 3.4E-08 42.6 7.4 146 386-541 11-165 (198)
304 cd01849 YlqF_related_GTPase Yl 97.3 0.0004 1E-08 46.2 4.3 41 455-495 1-42 (155)
305 KOG0071 consensus 97.2 0.0016 4.1E-08 42.1 7.2 148 386-540 20-173 (180)
306 KOG0086 consensus 97.2 0.0035 9E-08 39.7 8.9 147 386-538 12-164 (214)
307 cd01849 YlqF_related_GTPase Yl 97.2 0.00062 1.6E-08 44.9 4.9 55 382-439 99-154 (155)
308 COG5256 TEF1 Translation elong 97.2 0.0021 5.4E-08 41.2 7.6 103 766-875 211-315 (428)
309 KOG0087 consensus 97.2 0.0018 4.5E-08 41.7 7.1 150 386-541 17-172 (222)
310 cd01858 NGP_1 NGP-1. Autoanti 97.1 0.00071 1.8E-08 44.5 4.5 46 450-495 5-52 (157)
311 COG3596 Predicted GTPase [Gene 97.1 0.0022 5.7E-08 41.1 6.9 112 382-496 37-162 (296)
312 KOG0097 consensus 97.1 0.0079 2E-07 37.3 9.5 147 386-538 14-166 (215)
313 PRK10751 molybdopterin-guanine 97.0 0.0033 8.3E-08 39.9 7.3 61 383-453 2-62 (170)
314 cd01857 HSR1_MMR1 HSR1/MMR1. 97.0 0.001 2.5E-08 43.5 4.6 47 449-495 7-55 (141)
315 cd04178 Nucleostemin_like Nucl 97.0 0.0011 2.9E-08 43.1 4.9 54 383-439 116-171 (172)
316 pfam00735 Septin Septin. Membe 97.0 0.0035 8.9E-08 39.7 7.3 111 386-497 7-156 (280)
317 cd03703 aeIF5B_II aeIF5B_II: T 97.0 0.0011 2.8E-08 43.2 4.7 90 557-646 1-105 (110)
318 smart00053 DYNc Dynamin, GTPas 97.0 0.02 5.1E-07 34.6 10.6 67 430-498 125-208 (240)
319 KOG0074 consensus 96.9 0.0071 1.8E-07 37.6 8.2 150 386-541 20-175 (185)
320 PRK05506 bifunctional sulfate 96.9 0.0064 1.6E-07 37.9 7.9 16 451-466 174-189 (613)
321 pfam04548 AIG1 AIG1 family. Ar 96.9 0.016 4.1E-07 35.2 9.8 110 386-496 3-130 (200)
322 KOG0088 consensus 96.9 0.00099 2.5E-08 43.5 3.5 142 386-540 16-170 (218)
323 KOG0080 consensus 96.9 0.0027 7E-08 40.5 5.8 149 386-540 14-169 (209)
324 TIGR01394 TypA_BipA GTP-bindin 96.9 0.0038 9.8E-08 39.5 6.5 127 731-876 167-300 (609)
325 PRK10218 GTP-binding protein; 96.9 0.0025 6.4E-08 40.7 5.3 26 763-788 462-487 (607)
326 pfam05783 DLIC Dynein light in 96.8 0.0064 1.6E-07 37.9 7.4 88 385-477 47-146 (490)
327 PRK09563 rbgA ribosomal biogen 96.8 0.0026 6.6E-08 40.6 5.3 94 438-541 8-102 (282)
328 TIGR03596 GTPase_YlqF ribosome 96.8 0.0021 5.4E-08 41.2 4.7 94 438-541 5-99 (276)
329 TIGR03596 GTPase_YlqF ribosome 96.8 0.0026 6.6E-08 40.6 5.1 58 381-441 116-174 (276)
330 PRK05703 flhF flagellar biosyn 96.7 0.012 3.2E-07 35.9 8.2 144 382-540 209-391 (412)
331 pfam04670 Gtr1_RagA Gtr1/RagA 96.7 0.04 1E-06 32.5 10.5 112 386-498 2-127 (230)
332 cd01850 CDC_Septin CDC/Septin. 96.7 0.0087 2.2E-07 37.0 7.1 111 386-497 7-158 (276)
333 COG0378 HypB Ni2+-binding GTPa 96.7 0.00061 1.6E-08 44.9 1.2 150 380-542 9-198 (202)
334 PTZ00327 eukaryotic translatio 96.7 0.02 5.1E-07 34.6 8.8 102 768-872 226-350 (460)
335 cd03691 BipA_TypA_II BipA_TypA 96.7 0.0028 7.3E-08 40.3 4.4 69 802-872 12-84 (86)
336 PRK09563 rbgA ribosomal biogen 96.6 0.0036 9.1E-08 39.6 4.8 57 381-440 119-176 (282)
337 KOG1490 consensus 96.6 0.0033 8.4E-08 39.9 4.6 152 382-538 167-334 (620)
338 PRK13796 GTP-binding protein Y 96.6 0.0037 9.3E-08 39.6 4.8 94 441-542 59-158 (367)
339 KOG1707 consensus 96.6 0.0064 1.6E-07 37.9 5.8 149 381-538 6-168 (625)
340 cd01858 NGP_1 NGP-1. Autoanti 96.6 0.0049 1.2E-07 38.7 5.1 55 382-439 101-156 (157)
341 cd01852 AIG1 AIG1 (avrRpt2-ind 96.6 0.025 6.3E-07 33.9 8.7 111 386-497 3-131 (196)
342 KOG3883 consensus 96.5 0.012 3.2E-07 36.0 7.1 126 382-509 8-143 (198)
343 cd03115 SRP The signal recogni 96.5 0.025 6.4E-07 33.9 8.6 106 385-495 2-152 (173)
344 PRK12288 ribosome-associated G 96.5 0.0041 1E-07 39.3 4.5 84 451-539 120-204 (344)
345 TIGR03597 GTPase_YqeH ribosome 96.5 0.0048 1.2E-07 38.8 4.8 93 441-541 51-149 (360)
346 cd01855 YqeH YqeH. YqeH is an 96.5 0.0055 1.4E-07 38.4 5.0 98 440-542 21-122 (190)
347 PRK00741 prfC peptide chain re 96.4 0.011 2.8E-07 36.4 6.3 116 517-633 246-376 (526)
348 COG1162 Predicted GTPases [Gen 96.4 0.0035 8.9E-08 39.7 3.7 80 454-539 80-161 (301)
349 cd04088 EFG_mtEFG_II EFG_mtEFG 96.4 0.0065 1.6E-07 37.9 5.1 71 797-872 4-81 (83)
350 cd01857 HSR1_MMR1 HSR1/MMR1. 96.4 0.0071 1.8E-07 37.6 5.1 54 384-440 84-138 (141)
351 PRK12289 ribosome-associated G 96.3 0.0072 1.8E-07 37.6 4.7 82 451-540 86-169 (351)
352 cd03699 lepA_II lepA_II: This 96.3 0.0094 2.4E-07 36.8 5.2 75 798-873 9-85 (86)
353 PRK10463 hydrogenase nickel in 96.3 0.0046 1.2E-07 38.9 3.5 149 382-541 103-285 (290)
354 PRK01889 ribosome-associated G 96.2 0.0068 1.7E-07 37.7 4.4 82 451-540 109-191 (353)
355 PRK00098 ribosome-associated G 96.2 0.0079 2E-07 37.3 4.4 83 451-540 78-162 (298)
356 KOG2485 consensus 96.2 0.009 2.3E-07 36.9 4.7 60 435-496 27-87 (335)
357 pfam00448 SRP54 SRP54-type pro 96.2 0.019 4.8E-07 34.7 6.3 111 383-495 1-153 (196)
358 cd03689 RF3_II RF3_II: this su 96.2 0.018 4.5E-07 34.9 6.1 74 798-873 3-83 (85)
359 cd01854 YjeQ_engC YjeQ/EngC. 96.1 0.012 2.9E-07 36.2 4.9 81 451-539 76-158 (287)
360 PRK12289 ribosome-associated G 96.0 0.0093 2.4E-07 36.8 4.2 60 381-444 169-237 (351)
361 KOG1487 consensus 96.0 0.012 3E-07 36.1 4.5 82 386-469 62-152 (358)
362 PRK13351 elongation factor G; 96.0 0.032 8.2E-07 33.1 6.7 96 757-864 558-674 (687)
363 KOG0091 consensus 96.0 0.03 7.8E-07 33.3 6.5 148 386-541 11-169 (213)
364 PRK11537 putative GTP-binding 95.9 0.055 1.4E-06 31.5 7.6 114 382-497 3-165 (317)
365 pfam03193 DUF258 Protein of un 95.9 0.014 3.5E-07 35.7 4.5 60 382-444 34-101 (161)
366 PRK00098 ribosome-associated G 95.9 0.01 2.6E-07 36.6 3.8 58 382-444 163-229 (298)
367 TIGR03348 VI_IcmF type VI secr 95.9 0.028 7.2E-07 33.5 6.1 116 381-499 109-260 (1169)
368 pfam02492 cobW CobW/HypB/UreG, 95.8 0.045 1.1E-06 32.2 7.0 113 384-497 1-152 (174)
369 TIGR00485 EF-Tu translation el 95.8 0.076 2E-06 30.6 8.2 108 762-873 185-294 (394)
370 cd03110 Fer4_NifH_child This p 95.8 0.032 8E-07 33.2 6.0 69 427-497 90-158 (179)
371 cd01855 YqeH YqeH. YqeH is an 95.7 0.02 5.2E-07 34.5 4.9 53 386-439 130-189 (190)
372 PRK12740 elongation factor G; 95.7 0.037 9.4E-07 32.7 6.2 96 757-865 543-659 (670)
373 KOG0461 consensus 95.6 0.082 2.1E-06 30.3 7.7 83 733-818 392-483 (522)
374 COG0050 TufB GTPases - transla 95.6 0.069 1.7E-06 30.9 7.2 107 762-872 185-293 (394)
375 PRK09601 translation-associate 95.6 0.038 9.8E-07 32.6 5.9 74 386-464 5-107 (364)
376 cd01854 YjeQ_engC YjeQ/EngC. 95.6 0.0095 2.4E-07 36.8 2.8 60 382-444 160-227 (287)
377 PRK13796 GTP-binding protein Y 95.4 0.028 7.2E-07 33.5 4.7 52 385-439 164-221 (367)
378 COG1217 TypA Predicted membran 95.4 0.062 1.6E-06 31.2 6.5 78 559-638 244-328 (603)
379 PRK12288 ribosome-associated G 95.4 0.02 5.1E-07 34.6 3.9 85 351-444 181-273 (344)
380 PRK01889 ribosome-associated G 95.3 0.023 5.8E-07 34.2 3.8 58 384-444 195-260 (353)
381 cd04092 mtEFG2_II_like mtEFG2_ 95.2 0.078 2E-06 30.5 6.4 75 797-873 4-82 (83)
382 PRK05433 GTP-binding protein L 95.2 0.039 9.9E-07 32.6 4.9 21 762-782 451-471 (601)
383 PRK06995 flhF flagellar biosyn 95.1 0.14 3.6E-06 28.7 7.6 144 380-539 173-356 (404)
384 PRK12727 flagellar biosynthesi 95.1 0.069 1.8E-06 30.9 5.9 142 380-539 345-527 (557)
385 TIGR01393 lepA GTP-binding pro 95.1 0.15 3.9E-06 28.5 7.6 101 768-873 171-277 (598)
386 PRK12312 infB translation init 95.1 0.032 8.1E-07 33.2 4.0 30 713-743 464-493 (610)
387 TIGR00475 selB selenocysteine- 95.1 0.031 8E-07 33.2 4.0 104 768-874 158-267 (627)
388 cd03700 eEF2_snRNP_like_II EF2 95.0 0.11 2.8E-06 29.5 6.7 76 795-872 5-91 (93)
389 CHL00189 infB translation init 95.0 0.038 9.6E-07 32.7 4.2 31 712-743 622-652 (770)
390 cd03116 MobB Molybdenum is an 95.0 0.027 7E-07 33.6 3.4 60 383-452 1-60 (159)
391 cd02036 MinD Bacterial cell di 94.9 0.093 2.4E-06 30.0 6.0 63 431-495 64-127 (179)
392 TIGR03597 GTPase_YqeH ribosome 94.8 0.045 1.1E-06 32.2 4.3 53 385-440 156-214 (360)
393 cd01853 Toc34_like Toc34-like 94.8 0.16 4.1E-06 28.3 7.1 93 385-495 33-127 (249)
394 KOG0082 consensus 94.8 0.21 5.3E-06 27.6 7.6 75 421-495 186-275 (354)
395 cd03114 ArgK-like The function 94.8 0.1 2.6E-06 29.7 6.0 26 385-410 1-26 (148)
396 cd01900 YchF YchF subfamily. 94.7 0.068 1.7E-06 30.9 5.1 99 386-507 1-129 (274)
397 COG1161 Predicted GTPases [Gen 94.7 0.067 1.7E-06 30.9 5.0 99 433-540 13-112 (322)
398 cd00066 G-alpha G protein alph 94.6 0.16 4E-06 28.4 6.6 83 414-496 145-242 (317)
399 smart00275 G_alpha G protein a 94.6 0.23 6E-06 27.2 7.4 82 415-496 169-265 (342)
400 PRK12723 flagellar biosynthesi 94.5 0.27 7E-06 26.8 7.7 114 381-497 172-327 (388)
401 TIGR00483 EF-1_alpha translati 94.5 0.025 6.3E-07 33.9 2.3 103 760-872 221-325 (445)
402 KOG1547 consensus 94.4 0.055 1.4E-06 31.6 3.9 124 386-510 49-217 (336)
403 PRK12739 elongation factor G; 94.4 0.12 3.1E-06 29.1 5.6 72 780-864 600-676 (693)
404 KOG0083 consensus 94.3 0.023 5.9E-07 34.1 1.8 148 388-541 2-156 (192)
405 COG1161 Predicted GTPases [Gen 94.3 0.074 1.9E-06 30.7 4.4 90 381-479 130-220 (322)
406 PRK07560 elongation factor EF- 94.3 0.17 4.4E-06 28.2 6.2 98 756-866 579-699 (730)
407 TIGR00750 lao LAO/AO transport 94.3 0.1 2.6E-06 29.7 5.1 157 381-544 36-267 (333)
408 COG1341 Predicted GTPase or GT 94.2 0.05 1.3E-06 31.8 3.4 34 379-412 69-102 (398)
409 COG5019 CDC3 Septin family pro 94.2 0.091 2.3E-06 30.0 4.7 115 382-497 22-177 (373)
410 pfam00503 G-alpha G-protein al 94.2 0.17 4.3E-06 28.2 6.0 81 416-496 176-271 (350)
411 COG0523 Putative GTPases (G3E 94.2 0.33 8.3E-06 26.3 7.5 115 384-498 2-161 (323)
412 cd04091 mtEFG1_II_like mtEFG1_ 94.2 0.2 5.1E-06 27.7 6.3 72 798-872 5-79 (81)
413 KOG0458 consensus 94.1 0.15 3.8E-06 28.6 5.7 23 444-467 306-328 (603)
414 KOG0081 consensus 93.9 0.15 3.9E-06 28.5 5.4 142 387-541 13-177 (219)
415 KOG1486 consensus 93.9 0.12 3E-06 29.3 4.7 87 379-467 58-153 (364)
416 pfam01656 CbiA CobQ/CobB/MinD/ 93.9 0.17 4.2E-06 28.3 5.5 66 429-496 112-178 (212)
417 cd03690 Tet_II Tet_II: This su 93.7 0.17 4.4E-06 28.1 5.4 69 798-872 8-83 (85)
418 pfam03205 MobB Molybdopterin g 93.4 0.062 1.6E-06 31.2 2.6 29 384-412 1-29 (122)
419 cd03112 CobW_like The function 93.4 0.34 8.6E-06 26.2 6.3 22 384-405 1-22 (158)
420 cd03702 IF2_mtIF2_II This fami 93.2 0.11 2.7E-06 29.6 3.5 85 792-883 2-88 (95)
421 PRK09602 translation-associate 92.9 0.58 1.5E-05 24.5 7.0 73 386-463 5-113 (396)
422 COG5257 GCD11 Translation init 92.9 0.42 1.1E-05 25.5 6.3 92 767-861 191-299 (415)
423 cd04178 Nucleostemin_like Nucl 92.8 0.15 3.8E-06 28.6 3.9 43 455-497 1-45 (172)
424 KOG1143 consensus 92.7 0.23 5.8E-06 27.3 4.7 75 789-864 401-477 (591)
425 pfam07015 VirC1 VirC1 protein. 92.6 0.33 8.3E-06 26.2 5.4 58 429-494 83-152 (231)
426 PRK00007 elongation factor G; 92.6 0.2 5.1E-06 27.7 4.2 97 757-866 563-680 (693)
427 KOG0448 consensus 92.4 0.73 1.9E-05 23.9 8.0 121 379-500 105-279 (749)
428 TIGR00618 sbcc exonuclease Sbc 92.3 0.09 2.3E-06 30.1 2.2 22 383-404 30-51 (1063)
429 KOG1145 consensus 92.2 0.27 6.9E-06 26.8 4.6 13 751-763 517-529 (683)
430 COG2759 MIS1 Formyltetrahydrof 92.1 0.09 2.3E-06 30.1 2.0 125 690-823 381-519 (554)
431 cd04090 eEF2_II_snRNP Loc2 eEF 92.1 0.79 2E-05 23.6 6.9 70 794-863 4-85 (94)
432 COG3523 IcmF Type VI protein s 92.0 0.32 8.1E-06 26.3 4.7 113 382-498 124-272 (1188)
433 PRK12724 flagellar biosynthesi 92.0 0.32 8.1E-06 26.3 4.7 114 385-500 225-377 (432)
434 KOG0393 consensus 91.9 0.12 3E-06 29.3 2.4 154 385-544 6-178 (198)
435 COG0419 SbcC ATPase involved i 91.9 0.13 3.3E-06 29.0 2.6 13 382-395 459-471 (908)
436 PRK06731 flhF flagellar biosyn 91.8 0.84 2.1E-05 23.4 9.8 112 379-494 71-223 (270)
437 KOG0780 consensus 91.6 0.88 2.3E-05 23.3 6.7 113 379-494 97-252 (483)
438 COG1162 Predicted GTPases [Gen 91.5 0.28 7.2E-06 26.7 4.0 86 348-444 135-230 (301)
439 PRK09841 cryptic autophosphory 91.5 0.82 2.1E-05 23.5 6.4 67 712-779 608-687 (726)
440 PHA02518 ParA-like protein; Pr 91.5 0.41 1.1E-05 25.6 4.9 65 429-495 76-146 (211)
441 PRK13849 putative crown gall t 91.5 0.52 1.3E-05 24.9 5.4 58 429-494 83-152 (231)
442 PRK11889 flhF flagellar biosyn 90.9 0.77 2E-05 23.7 5.7 142 383-539 241-422 (436)
443 cd03688 eIF2_gamma_II eIF2_gam 90.8 1.1 2.7E-05 22.8 7.0 69 793-861 8-93 (113)
444 TIGR03371 cellulose_yhjQ cellu 90.8 0.42 1.1E-05 25.5 4.3 66 428-495 113-181 (246)
445 COG1763 MobB Molybdopterin-gua 90.7 0.85 2.2E-05 23.4 5.8 53 383-444 2-54 (161)
446 KOG4181 consensus 90.7 0.72 1.8E-05 23.9 5.4 78 383-463 188-308 (491)
447 PRK10416 cell division protein 90.5 1.1 2.9E-05 22.6 13.2 108 382-494 294-452 (499)
448 TIGR03499 FlhF flagellar biosy 90.3 0.54 1.4E-05 24.7 4.6 58 382-439 193-282 (282)
449 KOG2655 consensus 90.2 0.55 1.4E-05 24.7 4.5 110 386-497 24-173 (366)
450 cd03701 IF2_IF5B_II IF2_IF5B_I 90.2 0.25 6.5E-06 27.0 2.8 84 792-882 2-87 (95)
451 TIGR03185 DNA_S_dndD DNA sulfu 90.1 0.24 6E-06 27.2 2.5 23 382-404 27-49 (650)
452 KOG2484 consensus 90.1 0.47 1.2E-05 25.1 4.1 60 435-495 127-190 (435)
453 KOG0096 consensus 90.0 1.2 3.1E-05 22.3 6.7 142 385-537 12-161 (216)
454 cd01851 GBP Guanylate-binding 89.9 0.68 1.7E-05 24.1 4.7 59 384-443 8-73 (224)
455 KOG2423 consensus 89.8 0.1 2.6E-06 29.7 0.5 54 451-504 211-266 (572)
456 TIGR00993 3a0901s04IAP86 chlor 89.5 0.45 1.2E-05 25.3 3.6 95 382-494 123-219 (772)
457 COG1149 MinD superfamily P-loo 89.1 1.1 2.8E-05 22.7 5.3 61 431-493 165-225 (284)
458 cd03240 ABC_Rad50 The catalyti 88.7 0.36 9.2E-06 26.0 2.6 32 374-405 13-44 (204)
459 pfam01268 FTHFS Formate--tetra 88.5 0.36 9.1E-06 26.0 2.5 33 789-823 482-520 (555)
460 TIGR01007 eps_fam capsular exo 88.3 0.83 2.1E-05 23.5 4.3 109 381-495 58-196 (207)
461 PRK00771 signal recognition pa 88.1 1.7 4.2E-05 21.4 6.6 28 378-405 92-119 (433)
462 cd03279 ABC_sbcCD SbcCD and ot 88.0 0.42 1.1E-05 25.5 2.6 24 382-405 27-50 (213)
463 pfam06858 NOG1 Nucleolar GTP-b 87.5 0.96 2.4E-05 23.1 4.2 42 451-493 11-58 (58)
464 PRK13507 formate--tetrahydrofo 87.3 0.54 1.4E-05 24.8 2.8 38 788-825 512-553 (587)
465 KOG3905 consensus 86.7 2 5.1E-05 20.9 7.1 77 384-465 53-139 (473)
466 PRK13545 tagH teichoic acids e 86.4 2 5.2E-05 20.8 6.8 116 376-493 43-204 (549)
467 COG0455 flhG Antiactivator of 86.4 2.1 5.3E-05 20.8 8.0 63 431-495 114-179 (262)
468 PRK10246 exonuclease subunit S 86.2 0.56 1.4E-05 24.6 2.4 12 382-396 505-516 (1047)
469 PTZ00258 GTP-binding protein; 86.2 1.2 3E-05 22.5 4.1 55 385-439 24-95 (392)
470 cd01983 Fer4_NifH The Fer4_Nif 85.9 2.2 5.5E-05 20.6 6.6 94 385-490 1-99 (99)
471 TIGR03029 EpsG chain length de 85.8 2.2 5.6E-05 20.6 6.2 61 430-491 213-274 (274)
472 PRK13505 formate--tetrahydrofo 85.6 0.58 1.5E-05 24.5 2.3 34 789-824 483-522 (556)
473 PRK12319 acetyl-CoA carboxylas 85.6 0.93 2.4E-05 23.1 3.3 16 474-489 128-143 (256)
474 TIGR00176 mobB molybdopterin-g 85.4 0.58 1.5E-05 24.5 2.2 94 385-494 1-122 (165)
475 cd02042 ParA ParA and ParB of 85.2 2 5E-05 20.9 4.8 62 394-465 11-73 (104)
476 PRK13695 putative NTPase; Prov 84.9 2.4 6.1E-05 20.3 9.6 104 386-491 6-138 (174)
477 cd01899 Ygr210 Ygr210 subfamil 84.5 2.5 6.4E-05 20.2 5.1 73 386-463 1-109 (318)
478 cd00477 FTHFS Formyltetrahydro 84.5 0.93 2.4E-05 23.1 2.9 33 789-823 467-505 (524)
479 KOG4252 consensus 84.4 0.75 1.9E-05 23.8 2.4 109 382-497 19-139 (246)
480 cd01122 GP4d_helicase GP4d_hel 84.3 2.6 6.6E-05 20.1 8.9 111 382-492 29-193 (271)
481 cd03233 ABC_PDR_domain1 The pl 83.7 0.85 2.2E-05 23.4 2.4 25 381-405 31-55 (202)
482 pfam05049 IIGP Interferon-indu 83.6 2.7 6.9E-05 19.9 8.7 114 382-498 33-157 (375)
483 cd03234 ABCG_White The White s 83.5 0.87 2.2E-05 23.3 2.4 31 375-405 25-55 (226)
484 KOG3887 consensus 83.1 2.9 7.3E-05 19.8 5.1 110 376-497 23-150 (347)
485 pfam00154 RecA recA bacterial 82.8 2.9 7.5E-05 19.7 5.7 86 381-489 50-136 (322)
486 cd03297 ABC_ModC_molybdenum_tr 82.8 0.94 2.4E-05 23.1 2.3 24 383-406 23-46 (214)
487 PRK11248 tauB taurine transpor 82.7 0.95 2.4E-05 23.1 2.3 33 376-408 20-52 (255)
488 PRK03695 vitamin B12-transport 82.6 0.99 2.5E-05 23.0 2.4 27 381-407 21-47 (245)
489 KOG2749 consensus 82.2 1.2 3.1E-05 22.3 2.7 34 379-412 99-132 (415)
490 COG0410 LivF ABC-type branched 82.1 1.1 2.7E-05 22.8 2.4 29 378-406 24-52 (237)
491 KOG3125 consensus 82.1 3.1 7.9E-05 19.6 7.7 109 380-489 24-138 (234)
492 PRK10867 signal recognition pa 81.8 3.2 8.1E-05 19.5 7.9 23 382-404 99-121 (453)
493 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 81.8 1.1 2.8E-05 22.6 2.4 35 374-408 39-73 (224)
494 TIGR03018 pepcterm_TyrKin exop 81.8 3.2 8.1E-05 19.5 5.4 57 432-490 151-207 (207)
495 TIGR00955 3a01204 Pigment prec 81.8 1.3 3.2E-05 22.2 2.7 35 385-419 60-96 (671)
496 COG1419 FlhF Flagellar GTP-bin 81.5 3.3 8.3E-05 19.4 8.4 112 383-497 203-353 (407)
497 COG1120 FepC ABC-type cobalami 81.4 1.2 2.9E-05 22.5 2.4 32 381-412 26-58 (258)
498 cd03300 ABC_PotA_N PotA is an 81.4 1.2 3E-05 22.5 2.4 27 380-406 23-49 (232)
499 pfam08364 IF2_assoc Bacterial 81.4 0.79 2E-05 23.6 1.5 39 15-58 2-40 (41)
500 PRK13539 cytochrome c biogenes 81.4 1.2 3E-05 22.4 2.4 21 385-405 30-50 (206)
No 1
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=0 Score=1384.19 Aligned_cols=596 Identities=56% Similarity=0.885 Sum_probs=564.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 00000000100001111111111211111000012222221001345553024000234455356677666541011112
Q gi|254780787|r 280 RRRQEKFRRNQQQEKREKISREIVVPETITIQELSQRMSERSADVIKFLMKEGQIMKPGDVIDADLSEIIANEFGNTVKR 359 (884)
Q Consensus 280 rrr~e~~kr~~~~~~~ek~~rev~ipE~itv~ELA~~m~~~~~evik~l~~~G~~~t~nq~lD~etaelva~E~g~ev~~ 359 (884)
++++.+..+...+.+.+...+++.+|++|||.|||++|+++++++++.||.+|+|+|+||+||.||++++|+||||.+..
T Consensus 243 rrrr~~k~k~~~ekp~e~i~reIkIpEsITV~ELAekM~vKaSevi~~L~~~G~m~t~nq~lD~dtael~~~e~g~~~~~ 322 (839)
T PRK05306 243 KKRKKKKKKQAFQKPTEKIVREVVIPETITVAELANKMAVKAAEVIKKLMKLGVMVTINQSLDQDTAELVAEEFGHKVKL 322 (839)
T ss_pred CCCCCCHHHHHHCCCCCCCCEEEEECCCEEHHHHHHHHCCCHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 33321000001105666766489968964899999987889999999999778662266777999999999981977999
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECC-CCEEEEEECC
Q ss_conf 221012333221012410012553038986236850446777886422210012310001214999517-8438888516
Q gi|254780787|r 360 VLESDIEVGIFDVADSESDLDIRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQ-GKNITFLDTP 438 (884)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~-~~~~~~iDtP 438 (884)
..+...+ ...++..+.+||||||||||||||||||||+||+|+|+++|+||||||||||++.++ +..|||||||
T Consensus 323 ~~~~~~~-----~~~~~~~~~~r~pvvt~mghvdhgkt~lld~~r~~~v~~~e~ggitq~iga~~v~~~~~~~itf~dtp 397 (839)
T PRK05306 323 VSEEDLE-----EGLDEEDLVPRPPVVTIMGHVDHGKTSLLDAIRKTKVAAGEAGGITQHIGAYQVETENGKKITFLDTP 397 (839)
T ss_pred ECCCHHH-----CCCCHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEECCC
T ss_conf 3620232-----01572105668988988577467731489998628753556787552223499995699879985588
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
Q ss_conf 61578999866642068059999836674023577789899709941561233124433200022100001320001234
Q gi|254780787|r 439 GHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGG 518 (884)
Q Consensus 439 Gh~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (884)
||+||+.||+||+++|||+||||+|||||||||+|+|+|++.+++|+||||||||+++++++++.++|+++++..++|||
T Consensus 398 gh~af~~mr~rga~~tdi~ilvvaaddgv~pqt~eai~~~~~a~vp~ivaink~d~~~a~~~~v~~~l~~~~~~~e~~gg 477 (839)
T PRK05306 398 GHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELTEYGLVPEEWGG 477 (839)
T ss_pred CHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHCCC
T ss_conf 55889999863576543699999777775677899999999749988999740467889889999999984986454289
Q ss_pred CCEEEEEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCCCCCCCCCCC
Q ss_conf 74036311002477411221000023333420003486664167778863776200000000000000000256655542
Q gi|254780787|r 519 DILDVEISAKNNLNLDKLLDAILLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILVVGDQWGKI 598 (884)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v 598 (884)
++.++++||++|+|+++||++|++++++++++++|..++.|+|+|+.+|+|+|.++|++|++|+|+.||+++||..||+|
T Consensus 478 ~~~~v~~sa~~~~~~~~l~e~i~l~ae~~~l~a~~~~~a~g~vie~~~~~~~g~v~t~lv~~gtl~~gd~~v~g~~~g~v 557 (839)
T PRK05306 478 DTIFVPVSAKTGEGIDELLEAILLQAEVLELKANPDRPARGVVIEAKLDKGRGPVATVLVQNGTLKVGDIVVAGTTYGRV 557 (839)
T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCEEEEEEECCEECCCCEEEEECCCCCC
T ss_conf 44899815157887899999999876652044799986179999877527875058999842713259989981020551
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 00014665322100001222111123475555404312420366899999999999999877664456578888520001
Q gi|254780787|r 599 RALFNDRGQGISKAVPSMPIEVLGLQGMPMAGDKFGVVDSESRAREIAQYRQRVTRNKSMARRLGSHSALEKLVKNANIS 678 (884)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (884)
|+|+|+.|..++.++||+||+|+||+.+|.+|+.|.++.+++.|+.++++|+...++..+.... ...+++++. ....
T Consensus 558 r~m~~~~g~~~~~a~Ps~pv~i~G~~~~P~aGd~~~~~~~e~~a~~~~~~r~~~~~~~~~~~~~--~~~l~~~~~-~~~~ 634 (839)
T PRK05306 558 RAMVDDNGKRVKEAGPSTPVEILGLSGVPQAGDEFVVVEDEKKAREIAEYRQEKAREKKLARKQ--RVSLENLFA-QMKE 634 (839)
T ss_pred EEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH--HCCHHHHHH-HHHC
T ss_conf 0158899989871489877796056789988887785278899999999999999999875531--146988986-6522
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 23023344433310231234555421157653565788512685757788764325987999638999899999998398
Q gi|254780787|r 679 SKMKEFPVIIKGDVQGSVEAIVDSLGALKNSEVCLSIVHSSVGAINETDVSLAKASGAVIFGFNVRASSQARVLAIKDEI 758 (884)
Q Consensus 679 ~~~~~~~~~ik~d~~gs~eal~~~l~~~~~~ev~i~v~~~~VG~v~~~DV~~A~~~~a~Il~FnVkv~~~a~~~A~~~gV 758 (884)
++.+++++|||+|++||+|||..+|.+|.+++|+++|+|++||+||++||+||++++|+||||||++++.|+.+|++.||
T Consensus 635 ~~~k~l~~iiK~Dv~Gs~eAi~~~l~~~~~~~v~~~ii~~~vG~itesDv~lA~as~a~iigFnv~~~~~~~~~a~~~~v 714 (839)
T PRK05306 635 GEVKELNLILKADVQGSVEALSDSLEKLSTDEVKVRIIHSGVGAITESDVTLAAASNAIIIGFNVRADAKARKLAEQEGV 714 (839)
T ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCC
T ss_conf 67427878985276543999999998368873789999516777768789889854988999538889899999998398
Q ss_pred EEEEEEHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEH
Q ss_conf 59975026789999999996306940478888789997887338987078999852178469807996699899822625
Q gi|254780787|r 759 KILYYKIIYDLLDSIKDSMSELLSPEIRETFLGNAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLK 838 (884)
Q Consensus 759 ~I~~~~IIY~L~d~~~~~~~~~l~~~~~~~~~g~a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~ 838 (884)
.|++|+|||+|+||++.+|++||+|.++|+++|.|+|++||+++|.|+||||+|++|+|++|+.+||+|||.+||+|+|.
T Consensus 715 ~i~~y~iIY~~id~v~~~~~g~l~p~~~e~~~G~a~v~~~f~~~k~g~iagc~v~~g~i~~~~~~r~~r~~~~~~~g~~~ 794 (839)
T PRK05306 715 DIRYYSIIYDLIDDVKAAMSGMLEPEYEEEIIGQAEVREVFKVSKVGTIAGCMVTEGKVKRNAKVRVLRDGVVIYEGELE 794 (839)
T ss_pred EEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEEECCCCCEEEEEEEEECEEECCCCEEEEECCEEEEEEEEH
T ss_conf 18992568879999999984489973278997999974579758873688899871889649927998799899962636
Q ss_pred HHHHCCHHHHHHHCCCEEEEEEECCEEEEECCEEEEEEEEEEEEC
Q ss_conf 766446006687279766999728411005898999889998514
Q gi|254780787|r 839 TLKRFKDEVSEVHAGQDCGMAFEKYDNIQAGDMIECFSIEHIKRS 883 (884)
Q Consensus 839 sl~~~k~~v~ev~~g~ecgi~~~~~~~~~~gD~i~~~~~~~~~~~ 883 (884)
||||||+||+||..|+||||.|+|||||++||+||||++++++|+
T Consensus 795 sl~~~k~~v~ev~~g~ecgi~~~~~~~~~~gd~ie~~~~~~~~~~ 839 (839)
T PRK05306 795 SLKRFKDDVKEVRAGYECGIGLENYNDIKEGDIIEAFEMVEVKRT 839 (839)
T ss_pred HHHHHHHCCCHHCCCCCCEEEECCCCCCCCCCEEEEEEEEEECCC
T ss_conf 641102031232389425267337357766988999899994289
No 2
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=0 Score=1336.10 Aligned_cols=579 Identities=42% Similarity=0.669 Sum_probs=545.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH-----HC
Q ss_conf 1111211111000012222221001345553024000234455356677666541011112221012333221-----01
Q gi|254780787|r 299 SREIVVPETITIQELSQRMSERSADVIKFLMKEGQIMKPGDVIDADLSEIIANEFGNTVKRVLESDIEVGIFD-----VA 373 (884)
Q Consensus 299 ~rev~ipE~itv~ELA~~m~~~~~evik~l~~~G~~~t~nq~lD~etaelva~E~g~ev~~~~~~~~~~~~~~-----~~ 373 (884)
...+.+++.+||+|||.+|+++++++|+.||.+|+|+|+||.||.||++++|+|||+++......+.+..... ..
T Consensus 183 p~~i~i~~~itv~ela~~~~~~~~eiIk~l~~~G~~~tiNq~ld~dt~~~ia~e~g~~~~~~~~~~~~~~~~~~~~~~~~ 262 (770)
T CHL00189 183 PESLIIDSPLTVQELAILLCISETEIIKSLFLKGISVTVNQILDISTISTVAEDFGINVDSQEQNNQNEKTVNISEINQF 262 (770)
T ss_pred CCEEEECCCEEHHHHHHHHCCCHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCC
T ss_conf 96699479668999998858998999999997696884265269999999999739888982342055544301012222
Q ss_pred CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEEC----CCCEEEEEECCCHHHHHHHHHH
Q ss_conf 241001255303898623685044677788642221001231000121499951----7843888851661578999866
Q gi|254780787|r 374 DSESDLDIRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAY----QGKNITFLDTPGHAAFYEMRAR 449 (884)
Q Consensus 374 ~~~~~~~~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~----~~~~~~~iDtPGh~~f~~~r~r 449 (884)
.+...+..||||||||||||||||||||+||+|||+++||||||||||||++.+ .+.+|||||||||+||++||+|
T Consensus 263 ~~~~~l~~RpPVVTIMGHVDHGKTsLLD~iR~t~Va~~EaGGITQhIGAy~V~~~~~~~~~~ITFlDTPGHeAFt~MRaR 342 (770)
T CHL00189 263 KSTIHLIRRPPIVTILGHVDHGKTTLLDAIRKTNIAQKEAGGITQKIGAYEVEVPYKDQNQKIVFLDTPGHEAFSSMRSR 342 (770)
T ss_pred CCHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEECEEEEEECCCCCCCEEEEECCCCHHHHHHHHHC
T ss_conf 32210677899899857725772037888852885134567655503529997515788975899559946889999862
Q ss_pred HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 64206805999983667402357778989970994156123312443320002210000132000123474036311002
Q gi|254780787|r 450 GARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKN 529 (884)
Q Consensus 450 g~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (884)
||++|||+||||||||||||||+|+|+|++++++||||||||||++.++++++.++|.++++..++|||+++++++||++
T Consensus 343 GA~vTDIvILVVAADDGVmPQTiEAI~hakaA~VPiIVAINKiDkp~an~~rVk~eL~e~gli~EewGGd~~~V~ISAkt 422 (770)
T CHL00189 343 GANVTDIAILIVAADDGVKPQTIEAINHIQAANVPIIVAINKIDKENANIDRVKQELSKYNLISEKWGGQTPMIPISALQ 422 (770)
T ss_pred CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHCCCCEEEEEEEECC
T ss_conf 78666679999965788567279999999876998899987745899885789999998695522237955999966167
Q ss_pred CCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCCCCCCCCCCCEECCCCCCCCC
Q ss_conf 47741122100002333342000348666416777886377620000000000000000025665554200014665322
Q gi|254780787|r 530 NLNLDKLLDAILLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILVVGDQWGKIRALFNDRGQGI 609 (884)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 609 (884)
|+|+++||+++++++++++++++|..++.|+|+|+.+|+|+|.++|++|++|||+.||++|||..||+||+|++..|..+
T Consensus 423 g~gId~LLE~IlL~AEvlELkAnp~~~A~GvVIES~ldkgrG~VATvLVQ~GTLkvGD~iVaG~~~GKVRaM~Dd~Gk~v 502 (770)
T CHL00189 423 GTNIDKLLEMILLLAEIENLQADPTQLAQGTILEAHLDKTKGPVATLLVQNGTLRIGDIIVAGTSLGKIRGMINSAGNKI 502 (770)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCEEEEEEECCEECCCCEEEECCCEEEEEEEECCCCCCC
T ss_conf 98879999999999878752368898614999997651686776899995484403999998363447889889999844
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 10000122211112347555540431242036689999999999999987766445657888852000123023344433
Q gi|254780787|r 610 SKAVPSMPIEVLGLQGMPMAGDKFGVVDSESRAREIAQYRQRVTRNKSMARRLGSHSALEKLVKNANISSKMKEFPVIIK 689 (884)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik 689 (884)
+.|+||+||++.||+.+|.+|+.|.++.+++.|+.++.++....+...... ............++.+++++|||
T Consensus 503 keA~PS~PVeIlGl~~vP~AGD~f~vv~sEk~Ak~ia~~r~~~~~~~~~~~------~sl~~l~~~~~e~~~k~LnlIIK 576 (770)
T CHL00189 503 NEAGPSSPVEIWGLSSVPATGEYFQVVNSEKEAKLKVIENPESNQKQTTSR------ITLDTPKTINSEDEKKQLNLIIK 576 (770)
T ss_pred CCCCCCCCEEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH------CCHHHHHHHHHCCCCEEEEEEEE
T ss_conf 554899868987787898779889993799999999999999999977521------26555987863277407649999
Q ss_pred HHCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEHHHHH
Q ss_conf 31023123455542115765356578851268575778876432598799963899989999999839859975026789
Q gi|254780787|r 690 GDVQGSVEAIVDSLGALKNSEVCLSIVHSSVGAINETDVSLAKASGAVIFGFNVRASSQARVLAIKDEIKILYYKIIYDL 769 (884)
Q Consensus 690 ~d~~gs~eal~~~l~~~~~~ev~i~v~~~~VG~v~~~DV~~A~~~~a~Il~FnVkv~~~a~~~A~~~gV~I~~~~IIY~L 769 (884)
+|++||+|||..+|.+|.+++|+++|+|++||+||++||++|++++|+||||||++++.|+.+|++.||+|++|+|||+|
T Consensus 577 ADvqGSlEAI~~sL~kl~~~eV~v~II~sgVG~ITESDV~LA~aS~AiIIGFNVr~~~~ak~~Ae~~gV~Ir~y~IIY~L 656 (770)
T CHL00189 577 TDTQGSIEAILNSLSQIPQKKVQLNVLYSSPGEITETDVDLASTTNALIIAFNTNLAPGAKKAARKLNVDIREYDVIYDL 656 (770)
T ss_pred ECCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCHHHH
T ss_conf 17753099999999708988589999983215776636767650498899962798978999999759748991608889
Q ss_pred HHHHHHHHHHHCCCEEEEEEEEEEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHCCHHHHH
Q ss_conf 99999999630694047888878999788733898707899985217846980799669989982262576644600668
Q gi|254780787|r 770 LDSIKDSMSELLSPEIRETFLGNAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRFKDEVSE 849 (884)
Q Consensus 770 ~d~~~~~~~~~l~~~~~~~~~g~a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~e 849 (884)
+|+++++|+++|+|++++.++|.|+|++||+++| |+||||+|++|+|++++.+||+|+|.+||+|+|.||||||+||+|
T Consensus 657 iDdvk~~m~glL~P~~~E~~iG~AeVr~vF~isK-g~IAGc~Vt~G~I~r~~~vRViR~~~vI~eG~I~SLKRfKddVkE 735 (770)
T CHL00189 657 VEDIEYSMEDLLDPEYDKVPIGEAEVQTVFSLAK-SFVAGCRVTSGKILKNAHIKVIRKNKLIFEGDINSLKRVKEDVEE 735 (770)
T ss_pred HHHHHHHHHCCCCCEEEEEEEEEEEEEEEEECCC-CEEEEEEEEECEEECCCCEEEEECCEEEEEEEEHHHHCCCCCCCH
T ss_conf 9999999845799706899989999999995289-669899998178963992799769989998076775003202023
Q ss_pred HHCCCEEEEEEECCEEEEECCEEEEEEEEEEEECC
Q ss_conf 72797669997284110058989998899985149
Q gi|254780787|r 850 VHAGQDCGMAFEKYDNIQAGDMIECFSIEHIKRSL 884 (884)
Q Consensus 850 v~~g~ecgi~~~~~~~~~~gD~i~~~~~~~~~~~l 884 (884)
|++|+||||.|+|||||++||+||||++++.+|||
T Consensus 736 V~~G~ECGI~l~~fnDik~GDiIE~ye~ve~~rtL 770 (770)
T CHL00189 736 VQEGNECGIFIEEFQLWQSGDKIEAFELIPKKRTL 770 (770)
T ss_pred HCCCCCCEEECCCCCCCCCCCEEEEEEEEEEECCC
T ss_conf 15994153770483437779899998999973049
No 3
>PRK12312 infB translation initiation factor IF-2; Provisional
Probab=100.00 E-value=0 Score=1303.13 Aligned_cols=582 Identities=43% Similarity=0.703 Sum_probs=548.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHH--HHHHH
Q ss_conf 1111111121111100001222222100134555302400023445535667766654101111222101233--32210
Q gi|254780787|r 295 REKISREIVVPETITIQELSQRMSERSADVIKFLMKEGQIMKPGDVIDADLSEIIANEFGNTVKRVLESDIEV--GIFDV 372 (884)
Q Consensus 295 ~ek~~rev~ipE~itv~ELA~~m~~~~~evik~l~~~G~~~t~nq~lD~etaelva~E~g~ev~~~~~~~~~~--~~~~~ 372 (884)
.+.....+.+|+.+||+|||.+|+.+.+++++.||.+|+|+++||.||.||++++|.|||+++........+. .....
T Consensus 27 ~~~~~~~~~i~~~~tv~~la~~~~~~~~~vi~~l~~~G~~~~~n~~ld~~~~~~i~~e~g~~~~~~~~~~~~~~~~~~~~ 106 (610)
T PRK12312 27 TGVKDGVFVFTGPLSIFEFAQKINKSVAEIIKHFFLKGLMYNLNTILSEEQIAELCLEFGFDFKKETQITAENFLDNISF 106 (610)
T ss_pred CCCCCCEEEECCCEEHHHHHHHHCCCHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCC
T ss_conf 03678749918966999999887889999999999779487578734999999999983983798145416666664024
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 12410012553038986236850446777886422210012310001214999517843888851661578999866642
Q gi|254780787|r 373 ADSESDLDIRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGAR 452 (884)
Q Consensus 373 ~~~~~~~~~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~ 452 (884)
++++..+.+||||||||||||||||||||+||+|||+++||||||||||||++++++..+||||||||+||++||+||++
T Consensus 107 ~~~~~~l~~R~PvVtimGHVDHGKTsLLD~iR~t~V~~~EaGGITQhIGA~~v~~~~~~itFiDTPGHeAFt~mR~RGa~ 186 (610)
T PRK12312 107 EDDKKDLEKRPPIVTIMGHVDHGKTTLLDTIRKTNVVASEAGGITQHIGAYQVEYQGKKITFIDTPGHEAFTEMRARGAK 186 (610)
T ss_pred CCCHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEECEEEEEECCCEEEEECCCCHHHHHHHHHCCCC
T ss_conf 57653367889989996772577225889985486413467766440044999867976899728967989999970776
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 06805999983667402357778989970994156123312443320002210000132000123474036311002477
Q gi|254780787|r 453 VTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLN 532 (884)
Q Consensus 453 ~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (884)
+||||||||||||||||||+|||+|++++++|||||+||||++.++++++.++|.++++..++|||++.++++||++|+|
T Consensus 187 vtDI~iLVVaaddGv~pQTiEaI~~ak~a~vpiiVAiNKiDkp~a~~~~v~~~L~~~g~~~E~~GGdv~~V~iSAktg~G 266 (610)
T PRK12312 187 VTDIVILVVAADDGVKPQTEEAIDHAKAANVPIIVFVNKMDKPNANPDRIKNELSKYDLVPEEWGGDTPFVYGSALKNEG 266 (610)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCEEEEEECCCCCC
T ss_conf 54579999975789774269999999975998899850446788987899999987076678857944599903687989
Q ss_pred CCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCCCCCCCCCCCEECCCCCCCCCCCC
Q ss_conf 41122100002333342000348666416777886377620000000000000000025665554200014665322100
Q gi|254780787|r 533 LDKLLDAILLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILVVGDQWGKIRALFNDRGQGISKA 612 (884)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 612 (884)
+++||++++++++++++++++..++.|+|+|+.+++|+|.++|++++.|+|+.||++++|..||+||+|++..|..++.+
T Consensus 267 Id~LLe~IlL~AE~leLka~~~~~a~G~VIEsk~dkg~G~vatviVq~GtLk~GD~iV~G~~~GkVRam~d~~g~~lk~A 346 (610)
T PRK12312 267 IDELLDSILLLAEILNLKANPNRLAIGTVIEAKLDKGKGPVATLIVQNGTLKVGDFIVAGSTYGKIRSMEDENGKKLKKA 346 (610)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEEEEEEECCEEECCCEEEECCCCCCCCEEECCCCCCCCCC
T ss_conf 99999999999998765227898606999997861687636899983587815998998986686215773678614341
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 00122211112347555540431242036689999999999999987766445657888852000123023344433310
Q gi|254780787|r 613 VPSMPIEVLGLQGMPMAGDKFGVVDSESRAREIAQYRQRVTRNKSMARRLGSHSALEKLVKNANISSKMKEFPVIIKGDV 692 (884)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~d~ 692 (884)
+||+|+.+.||+.+|.+|+.|.++.+++.|+.++.++....+....... . ...........+.++++++||+|+
T Consensus 347 ~PS~pV~I~Gl~~vP~aGd~~~vv~~Ek~Ak~ia~~r~~~~~~~~~~~~-----~-~e~~~~~~~~~~~k~l~vIIKADv 420 (610)
T PRK12312 347 LPSTPVKVSGLNEVPQAGDKFIVFNDEKFAKKIANEKKQKQKQNELKSL-----Q-LEDIKQNIDSGELKELNIIIKADV 420 (610)
T ss_pred CCCCCEEEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHH-----H-HHHHHHHHHCCCCCEEEEEEEECC
T ss_conf 7998579846756756797699728899999999999999999887440-----0-888998863367512337998466
Q ss_pred CCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEHHHHHHHH
Q ss_conf 23123455542115765356578851268575778876432598799963899989999999839859975026789999
Q gi|254780787|r 693 QGSVEAIVDSLGALKNSEVCLSIVHSSVGAINETDVSLAKASGAVIFGFNVRASSQARVLAIKDEIKILYYKIIYDLLDS 772 (884)
Q Consensus 693 ~gs~eal~~~l~~~~~~ev~i~v~~~~VG~v~~~DV~~A~~~~a~Il~FnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~ 772 (884)
+||+|||..+|.++.+++++++|+|++||+||++||++|++++|+||||||+++++|+++|+++||+|++|+||||||||
T Consensus 421 ~GSlEAI~~sL~kl~~~eV~i~Ii~agVG~ItesDV~LA~as~AiIigFNV~~~~~a~~~A~~~gV~Ir~y~IIY~LiDd 500 (610)
T PRK12312 421 QGSLEAIKGIISKINVSGVKINIIRAAVGTISESDILLAQTSNSIIIGFNVKPSAIIKKLAESQGIKIRSHNIIYKIIEE 500 (610)
T ss_pred CCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHH
T ss_conf 76499999998656886435778633457776889999986699189973768877999877448626984228889999
Q ss_pred HHHHHHHHCCCEEEEEEEEEEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHCCHHHHHHHC
Q ss_conf 99999630694047888878999788733898707899985217846980799669989982262576644600668727
Q gi|254780787|r 773 IKDSMSELLSPEIRETFLGNAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRFKDEVSEVHA 852 (884)
Q Consensus 773 ~~~~~~~~l~~~~~~~~~g~a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~ 852 (884)
++++|+++|+|.+++.++|+|+|++||+++|.|+||||+|++|+|++++.+||+|+|.+||+|+|.||||||++|+||++
T Consensus 501 vk~~m~g~L~p~~~E~~iG~AeV~~vF~~sk~g~IAGc~V~~G~i~r~~~vRVlR~~~vI~eG~I~SLrr~KddVkEV~~ 580 (610)
T PRK12312 501 IEKILKGMLDPVYEEVVIGQAEVRKLFKHSKVGTIAGCYVTSGKVKRNAKVRVIRNGKVIHEGKIASLKHLKDDVKEVEK 580 (610)
T ss_pred HHHHHHCCCCCCEEEEEEEEEEEEEEEECCCCEEEEEEEEEECEEEECCEEEEEECCEEEEEEEEHHHHHCCCCCCHHCC
T ss_conf 99998458997247999899998888864886178999997468971984899889999997167774020102112058
Q ss_pred CCEEEEEEECCEEEEECCEEEEEEEEEEEE
Q ss_conf 976699972841100589899988999851
Q gi|254780787|r 853 GQDCGMAFEKYDNIQAGDMIECFSIEHIKR 882 (884)
Q Consensus 853 g~ecgi~~~~~~~~~~gD~i~~~~~~~~~~ 882 (884)
|+||||.|+|||||++||+||||+++|+++
T Consensus 581 G~ECGI~l~~f~di~~GDiIE~ye~~ev~~ 610 (610)
T PRK12312 581 GKECGIHIKNFNDIKENDIIEAYEDVEVEE 610 (610)
T ss_pred CCCCEEEECCCCCCCCCCEEEEEEEEEEEC
T ss_conf 953248832735687698999999999639
No 4
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=1086.23 Aligned_cols=504 Identities=53% Similarity=0.850 Sum_probs=483.8
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECC---CCEEEEEECCCHHHHHHHHHHHHHCCC
Q ss_conf 12553038986236850446777886422210012310001214999517---843888851661578999866642068
Q gi|254780787|r 379 LDIRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQ---GKNITFLDTPGHAAFYEMRARGARVTD 455 (884)
Q Consensus 379 ~~~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~---~~~~~~iDtPGh~~f~~~r~rg~~~~d 455 (884)
+.+||||||||||||||||||||+||+|+|+.+||||||||||||+++++ ...+||||||||++||+||+||+++||
T Consensus 1 ~~~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtD 80 (509)
T COG0532 1 LELRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTD 80 (509)
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCEEEEECCCCHHHHHHHHHCCCCCCC
T ss_conf 99889889996743588420166674176435667850017434999864688652899748957888878755775445
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 05999983667402357778989970994156123312443320002210000132000123474036311002477411
Q gi|254780787|r 456 IAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDK 535 (884)
Q Consensus 456 ~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (884)
|||||||+|||+||||+|+|+|+|.+++|||||+||||++.++++++.+++.++++..+.|++++.++++||++|+|+++
T Consensus 81 IaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~e 160 (509)
T COG0532 81 IAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDE 160 (509)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHCCCCEEEEEEECCCCCCHHH
T ss_conf 79999975678566179999999877999899985432799887899998877798876618814999743247879799
Q ss_pred CCCCHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC
Q ss_conf 22100002333342000348666416777886377620000000000000000025665554200014665322100001
Q gi|254780787|r 536 LLDAILLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILVVGDQWGKIRALFNDRGQGISKAVPS 615 (884)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 615 (884)
||+++++.++.++++++|..++.|+++|+..++|+|.+++++++.|+|+.||++++|..||+|++|++..+..+..+.|+
T Consensus 161 LL~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~GtL~~GD~iv~g~~~g~I~t~v~~~~~~i~~a~ps 240 (509)
T COG0532 161 LLELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGTLKKGDIIVAGGEYGRVRTMVDDLGKPIKEAGPS 240 (509)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEEEEEEECCEEECCCEEEECCCCCCEEEEEHHCCCCCCCCCCC
T ss_conf 99999988899864428898724999999862688752899996484744999998378773698554209895214798
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf 22211112347555540431242036689999999999999987766445657888852000123023344433310231
Q gi|254780787|r 616 MPIEVLGLQGMPMAGDKFGVVDSESRAREIAQYRQRVTRNKSMARRLGSHSALEKLVKNANISSKMKEFPVIIKGDVQGS 695 (884)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~d~~gs 695 (884)
.++.+.|++.+|.+|+.+.++.+++.|+..+.++....+..... .......++.+.......+.+.+++++|+|++||
T Consensus 241 ~~v~i~g~~evp~Ag~~~~v~~~e~~A~~~~~~r~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~k~~~viiKaDt~GS 318 (509)
T COG0532 241 KPVEILGLSEVPAAGDVFIVVKDEKKARAIAELRVVLLREAELA--SKKKGELEELIAEIKIRGELKELNVILKADTQGS 318 (509)
T ss_pred CCEEEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCH
T ss_conf 77698500366645762795277588763435764310114567--6778889999986431488531047999706661
Q ss_pred HHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEHHHHHHHHHHH
Q ss_conf 23455542115765356578851268575778876432598799963899989999999839859975026789999999
Q gi|254780787|r 696 VEAIVDSLGALKNSEVCLSIVHSSVGAINETDVSLAKASGAVIFGFNVRASSQARVLAIKDEIKILYYKIIYDLLDSIKD 775 (884)
Q Consensus 696 ~eal~~~l~~~~~~ev~i~v~~~~VG~v~~~DV~~A~~~~a~Il~FnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~ 775 (884)
+|||..+|.++..++++++|++++||+||++||++|++++|+||||||++++.|+++|+..||+||+|||||||+|+|++
T Consensus 319 lEAL~~~L~~~~~~~v~~~i~~~~VG~ite~DV~lA~as~avIigFnV~~~~~a~~~ae~~~V~I~~~~iIY~lied~~~ 398 (509)
T COG0532 319 LEALKGSLKKLGVDEVKVRIIHAGVGGITESDVMLAAASDAVIIGFNVRVDPEARRLAESEGVKIRYYDVIYKLIEDVEA 398 (509)
T ss_pred HHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCEEECCHHHHHHHHHHH
T ss_conf 99999999852797606889986048977326888873398799972577889999987469857881649999999999
Q ss_pred HHHHHCCCEEEEEEEEEEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHCCHHHHHHHCCCE
Q ss_conf 99630694047888878999788733898707899985217846980799669989982262576644600668727976
Q gi|254780787|r 776 SMSELLSPEIRETFLGNAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRFKDEVSEVHAGQD 855 (884)
Q Consensus 776 ~~~~~l~~~~~~~~~g~a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~e 855 (884)
||.++|+|++++.+.|.++++++|.+++.|.|+||+|++|+|++|+++|++|||.+||+|+|.||||||+||+||.+|+|
T Consensus 399 ~~~g~l~p~~~e~~~g~a~~r~v~~~~k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv~ev~~G~e 478 (509)
T COG0532 399 AMKGMLEPEKKERVIGLAEVRAVFKLPKVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDVKEVRKGQE 478 (509)
T ss_pred HHHHCCCHHHHHHCCCCEEEEEEEECCCCCEEEEEEEECCEEECCCCEEEEECCEEEEEEEEEEEECCCCCHHHHCCCCE
T ss_conf 98755164665430261678899984899739999986578945980799738908984488641246764767216867
Q ss_pred EEEEEECCEEEEECCEEEEEEEEEEEECC
Q ss_conf 69997284110058989998899985149
Q gi|254780787|r 856 CGMAFEKYDNIQAGDMIECFSIEHIKRSL 884 (884)
Q Consensus 856 cgi~~~~~~~~~~gD~i~~~~~~~~~~~l 884 (884)
|||.|+||+||++||+||||+.++.+|+|
T Consensus 479 cgI~i~~~~di~~gD~le~~~~~~~~r~l 507 (509)
T COG0532 479 CGIAIENYRDIKEGDILEVFEPVEVKRTL 507 (509)
T ss_pred EEEEECCCCCCCCCCEEEEEEEEECCHHH
T ss_conf 99992475658988779998877502110
No 5
>KOG1145 consensus
Probab=100.00 E-value=0 Score=1049.19 Aligned_cols=581 Identities=44% Similarity=0.728 Sum_probs=515.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCE---EECCCCCCC----HHHHHHHHHHHCCCCCCCCCHHHH---
Q ss_conf 1111112111110000122222210013455530240---002344553----566776665410111122210123---
Q gi|254780787|r 297 KISREIVVPETITIQELSQRMSERSADVIKFLMKEGQ---IMKPGDVID----ADLSEIIANEFGNTVKRVLESDIE--- 366 (884)
Q Consensus 297 k~~rev~ipE~itv~ELA~~m~~~~~evik~l~~~G~---~~t~nq~lD----~etaelva~E~g~ev~~~~~~~~~--- 366 (884)
....-..++..|++.+||..+.....++...++..+. .......+| .|++.++..++++..........+
T Consensus 57 ~~~~~~~v~~~m~~~kla~~~~~~~~~v~e~l~sv~~a~~~~~~~~~ld~~~I~ev~~~~~~~~~~~~~~~~~~~e~~~~ 136 (683)
T KOG1145 57 LKKKNFSVWNYMTAAKLAAALKCSVDEVQEALLSVGFAYNLAIADSNLDTKGILEVVELILMKYRFVLLPAETSVEEKAA 136 (683)
T ss_pred CCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 46754002122669887545427789999998730321012456554316789999999840014123770221456653
Q ss_pred HHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECC-CCEEEEEECCCHHHHHH
Q ss_conf 33221012410012553038986236850446777886422210012310001214999517-84388885166157899
Q gi|254780787|r 367 VGIFDVADSESDLDIRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQ-GKNITFLDTPGHAAFYE 445 (884)
Q Consensus 367 ~~~~~~~~~~~~~~~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~-~~~~~~iDtPGh~~f~~ 445 (884)
......+.+++.+.+||||||||||||||||||||+||+|.|+++|+||||||||||.++.+ +.++||||||||+||+.
T Consensus 137 ~~~~~~~a~p~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~a 216 (683)
T KOG1145 137 DVAPQPEADPKLLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSA 216 (683)
T ss_pred HCCCCCCCCHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCEEHHHCCCCCCEECEEEEECCCCCEEEEECCCCHHHHHH
T ss_conf 22668866976658899869986013577001998874072201323771000022999638997788756874788999
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEE
Q ss_conf 98666420680599998366740235777898997099415612331244332000221000013200012347403631
Q gi|254780787|r 446 MRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEI 525 (884)
Q Consensus 446 ~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (884)
||+|||.+|||+||||+++|||||||.|+|.|+|.+++|+||||||||+++++++++..+|+.+++..++|||+++.+++
T Consensus 217 MRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipi 296 (683)
T KOG1145 217 MRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPI 296 (683)
T ss_pred HHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHCCCCEEEEEE
T ss_conf 98626864447999997267756768999998876599789998436789989899999998769327770782369986
Q ss_pred EECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCCCCCCCCCCCEECCCCC
Q ss_conf 10024774112210000233334200034866641677788637762000000000000000002566555420001466
Q gi|254780787|r 526 SAKNNLNLDKLLDAILLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILVVGDQWGKIRALFNDR 605 (884)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~ 605 (884)
||++|.|++.|.++++++++++++++.|..|+.|+++|+.+++++|.++|++|+.|||+.|+++|||..|++||.|++..
T Consensus 297 SAl~g~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~vlV~G~~w~KVr~l~D~n 376 (683)
T KOG1145 297 SALTGENLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGSVLVAGKSWCKVRALFDHN 376 (683)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCCCCCEEEEECHHHHHHHHHHCC
T ss_conf 51147986899999999999864116889971289998641377564269999536231565899702144334455237
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH---HHHC
Q ss_conf 532210000122211112347555540431242036689999999999999987766445657888-----85---2000
Q gi|254780787|r 606 GQGISKAVPSMPIEVLGLQGMPMAGDKFGVVDSESRAREIAQYRQRVTRNKSMARRLGSHSALEKL-----VK---NANI 677 (884)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~ 677 (884)
|..+..+.|++|+++.||..+|.+||.+..+.++..|+.+..+|.......+.............. .. ....
T Consensus 377 Gk~i~~A~Ps~pv~V~GwkdlP~aGD~vleVeSe~~Ar~~~~~R~~~~~~Ek~~~~~e~~~~~~~~~~~~~~a~r~~~~~ 456 (683)
T KOG1145 377 GKPIDEATPSQPVEVLGWKDLPIAGDEVLEVESEDRARKVLSKRKDESEQEKISRDLEDIEEQREEAAEALLAKREEGEN 456 (683)
T ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 97922148998347642467998875489971389999999988888888777767888899999999999865321000
Q ss_pred -----CCCH----HHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCHH
Q ss_conf -----1230----2334443331023123455542115765356578851268575778876432598799963899989
Q gi|254780787|r 678 -----SSKM----KEFPVIIKGDVQGSVEAIVDSLGALKNSEVCLSIVHSSVGAINETDVSLAKASGAVIFGFNVRASSQ 748 (884)
Q Consensus 678 -----~~~~----~~~~~~ik~d~~gs~eal~~~l~~~~~~ev~i~v~~~~VG~v~~~DV~~A~~~~a~Il~FnVkv~~~ 748 (884)
.... .-+++|||+|++||+||+...|..|.+.+++.+|+|.+|||||++|+.+|+++.|+|+||||+..+.
T Consensus 457 ~~~~~~v~~~~~~~~~niIiK~DV~GS~EAv~d~L~tl~~~~v~l~~v~~gVG~vtesDlelA~~~daiI~~FnV~~~~~ 536 (683)
T KOG1145 457 IGRKTRVELHEQNPLFNIIIKCDVQGSAEAVLDALSTLNSEQVKLNVVHSGVGPVTESDLELAQASDAIIYGFNVKASPS 536 (683)
T ss_pred CCCCEECCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHCCCEEEEEECCCCHH
T ss_conf 24412113465786147999924656099999998616887468999972468887005678874285899996477717
Q ss_pred HHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEEECCCC-C--CEEEEEEEEEEEECCCEEEE
Q ss_conf 99999983985997502678999999999630694047888878999788733898-7--07899985217846980799
Q gi|254780787|r 749 ARVLAIKDEIKILYYKIIYDLLDSIKDSMSELLSPEIRETFLGNAEVLEVFAVTKL-G--NVAGCKVSEGKVERGSGVRL 825 (884)
Q Consensus 749 a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~l~~~~~~~~~g~a~v~~vF~~~k~-~--~i~G~~V~~G~i~~~~~~~v 825 (884)
.+..|+..||+|++|||||||+||+++.|.+.|+|...+.++|.|.|+++|.++-+ . .||||+|.+|+|.+++.+|+
T Consensus 537 ~~~~a~~~gVkI~~~nVIY~LieDv~~~ls~rlp~v~e~~vvGea~Vl~~F~i~~~rkr~~VAGC~V~~G~~~K~~~~rl 616 (683)
T KOG1145 537 VKQLAAAKGVKIRLYNVIYRLIEDVRELLSERLPPVEEQEVVGEAEVLATFDIREKRKRVPVAGCRVNNGVIKKSCKIRL 616 (683)
T ss_pred HHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEEEECCCCCCCCCCCEEEECCEEEECCEEEE
T ss_conf 88877606856864257999999999999734898247863040153545763366531210204764566721233899
Q ss_pred EECCEEEEEEEEHHHHHCCHHHHHHHCCCEEEEEEECCE-EEEECCEEEEEEE
Q ss_conf 669989982262576644600668727976699972841-1005898999889
Q gi|254780787|r 826 IRNSTVIYEGKLKTLKRFKDEVSEVHAGQDCGMAFEKYD-NIQAGDMIECFSI 877 (884)
Q Consensus 826 ~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~~~-~~~~gD~i~~~~~ 877 (884)
+|+|++||+|.|.||||.|++|.+|++|.||||.|++|| +|++||+|+||+.
T Consensus 617 vR~g~vV~~G~l~SlKh~KedV~~vkkg~ECGl~~~d~~~~f~~GD~i~~ye~ 669 (683)
T KOG1145 617 VRNGKVVFEGELDSLKHLKEDVTEVKKGHECGLTFDDGNEDFKEGDKIQCYEK 669 (683)
T ss_pred EECCCEEEEECHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEEEH
T ss_conf 86794799700467766466666641787521574468767776878999530
No 6
>PRK04004 translation initiation factor IF-2; Validated
Probab=100.00 E-value=0 Score=1018.09 Aligned_cols=470 Identities=31% Similarity=0.486 Sum_probs=405.1
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCC------------------EEEEEECCCH
Q ss_conf 1255303898623685044677788642221001231000121499951784------------------3888851661
Q gi|254780787|r 379 LDIRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGK------------------NITFLDTPGH 440 (884)
Q Consensus 379 ~~~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~------------------~~~~iDtPGh 440 (884)
|.+||||||||||||||||||||+||+|||+++||||||||||||+||++.. .++|||||||
T Consensus 1 ~~lR~PIvtimGHVDhGKTsLLD~iR~t~V~~~EaGGITQhIGA~~v~~~~~~~~~~~~~~~~~~~~~ipgllfiDTPGH 80 (592)
T PRK04004 1 MKLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLVKRLPLKLKIPGLLFIDTPGH 80 (592)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEECEEEECCCCHHHHCCCCCCCCCCCCCCCCCEEECCCCH
T ss_conf 99889889997873777636899986287735557762323065984123101103443344332345677557659965
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHH------------------
Q ss_conf 57899986664206805999983667402357778989970994156123312443320002------------------
Q gi|254780787|r 441 AAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKV------------------ 502 (884)
Q Consensus 441 ~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~------------------ 502 (884)
+|||+||+||+++|||||||||||||+||||+|||+|||++++|||||+||||++++|....
T Consensus 81 eaFt~mR~RGa~vtDiaILVVa~~dGv~pQT~EaI~~~k~~~vP~IVAiNKiDr~~gw~~~~~~~~~~~~~~q~~~v~~~ 160 (592)
T PRK04004 81 EAFSNLRKRGGALADIAILVVDINEGFQPQTIESLNILKSRKTPFVVAANKIDRIPGWKSVEGAPFLESFKKQSERVQAE 160 (592)
T ss_pred HHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHCCHHHHHH
T ss_conf 99999997367457889999977888676279999999975998899986223566677676741123223173889999
Q ss_pred --------HHHHHCCCCCCC------CCCCCCEEEEEEECCCCCCCCCCCCHHCCCC-CC--CCCCCCCCCCCCEEEEEE
Q ss_conf --------210000132000------1234740363110024774112210000233-33--420003486664167778
Q gi|254780787|r 503 --------RMSLLKHDVFVE------SMGGDILDVEISAKNNLNLDKLLDAILLQAE-ML--DLKTSINRKAEGIVVEGK 565 (884)
Q Consensus 503 --------~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~ 565 (884)
..+|.+++...+ +|++++.++|+||++|+|+++||++++..+. .+ ++++++..++.|+|+|+.
T Consensus 161 l~~~~~~vi~~l~e~G~~~e~~~~~~d~g~~v~~VpvSA~tGeGi~dLL~~i~~Laq~~l~~~Lka~~~~~a~GtViEsk 240 (592)
T PRK04004 161 LEEKLYELIGELYELGFSADRFDRVSDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEEELKIEVEGPGKGTVLEVK 240 (592)
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
T ss_conf 98888888899987287632214543458814899782056899899999999999999998536799998618999998
Q ss_pred EECCCCCCHHHHHHCCHHHCCCCCCCCCCCC----CCEECCCC-----------CCCCCCCCCCCCCCCCC--CCCCCCC
Q ss_conf 8637762000000000000000002566555----42000146-----------65322100001222111--1234755
Q gi|254780787|r 566 LDRGRGPVVTVLVQKGTLSKGNILVVGDQWG----KIRALFND-----------RGQGISKAVPSMPIEVL--GLQGMPM 628 (884)
Q Consensus 566 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~v~~~~~~-----------~~~~~~~~~~~~~~~~~--~~~~~~~ 628 (884)
.++|+|+++++++++|+|+.||++|+|..+| +||+|+++ ....+..+.++.++.+. ++..+ .
T Consensus 241 ~dkG~G~vatVIv~~GtLk~GD~IV~g~~~Gpi~tkVRALl~p~pl~E~r~~~~~~~~v~ev~aa~gvki~a~~le~~-~ 319 (592)
T PRK04004 241 EERGLGTTLDVILYDGTLRKGDTIVVGGLDGPIVTKVRALLKPKPLDEMRDPEDKFKPVDEVVAAAGVKISAPGLEDV-L 319 (592)
T ss_pred ECCCCCCEEEEEEECCEECCCCEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-C
T ss_conf 607988617999976847169999995157862000476607876431357788871677225898857963786667-8
Q ss_pred CCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCC
Q ss_conf 55404312420366899999999999999877664456578888520001230233444333102312345554211576
Q gi|254780787|r 629 AGDKFGVVDSESRAREIAQYRQRVTRNKSMARRLGSHSALEKLVKNANISSKMKEFPVIIKGDVQGSVEAIVDSLGALKN 708 (884)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~d~~gs~eal~~~l~~~~~ 708 (884)
+|+.+.++.++...+........ +. .. ..+..+.++++|||++||+|||..+|.+
T Consensus 320 aG~~~~vv~~~~~~~~~~~~~~e------~~----------~~------~i~~~~~gvIIKADv~GSlEAl~~~L~~--- 374 (592)
T PRK04004 320 AGSPLRVVRDEDVEEVKKEVEEE------IE----------EI------RIETDEEGVIVKADTLGSLEALVNELRK--- 374 (592)
T ss_pred CCCEEEECCCHHHHHHHHHHHHH------HH----------HH------HHCCCCCCEEEEECCCCCHHHHHHHHHH---
T ss_conf 89735862836899999999999------87----------53------3210015579995476749999999974---
Q ss_pred CEEEEEEEECCCCCCCHHHHHHHHHC------CCEEEEECCCCCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHCC
Q ss_conf 53565788512685757788764325------987999638999899999998398599750267899999999963069
Q gi|254780787|r 709 SEVCLSIVHSSVGAINETDVSLAKAS------GAVIFGFNVRASSQARVLAIKDEIKILYYKIIYDLLDSIKDSMSELLS 782 (884)
Q Consensus 709 ~ev~i~v~~~~VG~v~~~DV~~A~~~------~a~Il~FnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~l~ 782 (884)
++|||++++||+||++||++|+++ ||+||||||+++++|+++|+++||+||+|||||||||||++||+++++
T Consensus 375 --~~I~I~~a~VG~ItesDV~lA~as~~~~~~~avIlgFNVk~~~~a~~~Ae~~gV~I~~~~IIY~LiDd~~~~~~~~~~ 452 (592)
T PRK04004 375 --QGIPIRKADVGDVSKRDVIEASTVREKDPLYGVILAFNVKVLPDAEEEAESSDVKIFEGDVIYQLVEDYEKWVKEQKE 452 (592)
T ss_pred --CCCCEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHH
T ss_conf --697579840688664246672431255766518999548899889999997497699807487689999999997565
Q ss_pred CEEEE---EEEEEEEEE----EEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHCCHHHHHHHCCCE
Q ss_conf 40478---888789997----88733898707899985217846980799669989982262576644600668727976
Q gi|254780787|r 783 PEIRE---TFLGNAEVL----EVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRFKDEVSEVHAGQD 855 (884)
Q Consensus 783 ~~~~~---~~~g~a~v~----~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~e 855 (884)
+..++ .++++++++ +||+.++ |+||||+|++|+|++|+++ +.|||.+| |+|.||||||++|+||++|+|
T Consensus 453 ~~~~e~~~~~v~p~~i~ilp~~VFr~s~-p~I~Gv~V~~G~ik~g~~l-~~~dg~~i--G~I~SLk~~k~dV~Ev~~G~E 528 (592)
T PRK04004 453 AEKEKILEKLTRPAKIRILPGYVFRQSK-PAIVGVEVLGGTIKPGVPL-IKEDGKRV--GTIKQIQDRGENIKEAKAGME 528 (592)
T ss_pred HHHHHHHHCCEEEEEEEECCCEEEECCC-CEEEEEEEEEEEEECCCEE-EECCCCEE--EEEEEHHHCCCCHHHHCCCCE
T ss_conf 6567764144336999983661572699-8699999864689669869-90499199--898105213876545268977
Q ss_pred EEEEEECC---EEEEECCEEEEEEEEEE
Q ss_conf 69997284---11005898999889998
Q gi|254780787|r 856 CGMAFEKY---DNIQAGDMIECFSIEHI 880 (884)
Q Consensus 856 cgi~~~~~---~~~~~gD~i~~~~~~~~ 880 (884)
|||+|+|+ .+|.+||+|+++..++.
T Consensus 529 cgI~Ieg~t~GR~~~e~D~lys~i~~~~ 556 (592)
T PRK04004 529 VAISIDGPTVGRQIKEGDVLYVDVPEEH 556 (592)
T ss_pred EEEEEECCCCCCCCCCCCEEEEECCHHH
T ss_conf 9999647720677789987999689999
No 7
>TIGR00487 IF-2 translation initiation factor IF-2; InterPro: IPR000178 Initiation factor 2 (IF-2) (gene infB) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial IF-2 (IF-2(mt)) as well as to algal and plants chloroplast IF-2 (IF-2(chl)). Both IF-2(mt) and IF-2(chl) are encoded by nuclear genes and are produced as precursor proteins with a transit peptide. An exception are red algae where IF-2(chl) is encoded by the plastid genome .; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=100.00 E-value=0 Score=816.28 Aligned_cols=585 Identities=47% Similarity=0.751 Sum_probs=555.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCEEECCCCCCCHHHHHHHHH--HHCCCCCCCCCHHHHHHHHHHC-CC
Q ss_conf 11112111110000122222210013455530240002344553566776665--4101111222101233322101-24
Q gi|254780787|r 299 SREIVVPETITIQELSQRMSERSADVIKFLMKEGQIMKPGDVIDADLSEIIAN--EFGNTVKRVLESDIEVGIFDVA-DS 375 (884)
Q Consensus 299 ~rev~ipE~itv~ELA~~m~~~~~evik~l~~~G~~~t~nq~lD~etaelva~--E~g~ev~~~~~~~~~~~~~~~~-~~ 375 (884)
...+.++..+++.+++.++.....++++.+|.+|.++++|+.+|.+++.+++. +|+++.......+........+ +.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 82 (594)
T TIGR00487 3 PEVIVIGGTLTVGELAEKLNLKLSDLIKKLFLLGLMVTINQVLDKDTAELLAENFEFGLKVELRVTLEETEAEELDEPDS 82 (594)
T ss_pred CCCEEECCCEEHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 76032045100777787532416789999986010321212210467888886520232012334444555554312453
Q ss_pred CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCC--EEEEEECCCHHHHHHHHHHHHHC
Q ss_conf 1001255303898623685044677788642221001231000121499951784--38888516615789998666420
Q gi|254780787|r 376 ESDLDIRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGK--NITFLDTPGHAAFYEMRARGARV 453 (884)
Q Consensus 376 ~~~~~~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~--~~~~iDtPGh~~f~~~r~rg~~~ 453 (884)
......||||||||||||||||+|||+||+++++.+|+||||||||||++..... .++|+|||||++|+.||.||+.+
T Consensus 83 ~~~~~~~pp~~~~~gh~dhg~~~ll~~~~~~~~~~~~~gg~~~~~g~y~~~~~~~~~~~~f~d~pgh~~f~~~~~~g~~~ 162 (594)
T TIGR00487 83 GDLLVPRPPVVTIMGHVDHGKTSLLDSIRKTKVAAGEAGGITQHIGAYHVEKEDGKKWITFLDTPGHEAFTLMRARGAKV 162 (594)
T ss_pred HHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCHHHCCEEEEEECCCCEEEEEECCCCHHHHHHHHHCCCCE
T ss_conf 01110247636885123554034565554100001113652010130456642884379984077536778776337610
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 68059999836674023577789899709941561233124433200022100001320001234740363110024774
Q gi|254780787|r 454 TDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNL 533 (884)
Q Consensus 454 ~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (884)
+|+++|||++++|++|||+|++.|++..++|+|+++||+|++..+++++..++.+++...+.|||+..++++++++|.|+
T Consensus 163 ~d~~~~~~~~~dg~~~~~~~~~~h~~~~~~p~~~~~n~~d~p~~~pd~~~~~~~~~g~~~~~wgg~~~~~~~~~~~g~g~ 242 (594)
T TIGR00487 163 TDIVVLVVAADDGVKPQTIEAISHAKAANVPLIVAVNKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI 242 (594)
T ss_pred EEEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCHHCCCCEEEEEEECCCCCCH
T ss_conf 01579998415564235688765333307736998612467667877899998751775011278346886200136765
Q ss_pred CCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCC
Q ss_conf 11221000023333420003486664167778863776200000000000000000256655542000146653221000
Q gi|254780787|r 534 DKLLDAILLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILVVGDQWGKIRALFNDRGQGISKAV 613 (884)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 613 (884)
+.+++.+++......++.++...+.+++++...++++|.+++++++.|++..||.+++|..+|+++.+.+..|..+..++
T Consensus 243 ~~l~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~g~l~~gd~~~~g~~~g~~~~~~~~~g~~~~~~~ 322 (594)
T TIGR00487 243 DELLDAILLQSEVEELKANPNGQASGTVLEAELDKGRGPVATVLVQSGTLRVGDSVVLGAAYGKVRALIDENGKSVKEAG 322 (594)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCEECCCEEEEECCCCHHHHHHHHCCCHHHHCC
T ss_conf 78888888764344432032322220256410013656324566614720116413520321100001200242112127
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 01222111123475555404312420366899999999999999877664456578888520001230233444333102
Q gi|254780787|r 614 PSMPIEVLGLQGMPMAGDKFGVVDSESRAREIAQYRQRVTRNKSMARRLGSHSALEKLVKNANISSKMKEFPVIIKGDVQ 693 (884)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~d~~ 693 (884)
|+.++.+.|+..+|.+|+.+..+.+++.++....++....+......... ..............++++++++++++|++
T Consensus 323 p~~~~~~~g~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 401 (594)
T TIGR00487 323 PSKPVEILGLSDVPAAGDEFLVFKDEKDARLVAEKRAGKLKQKELSKSVK-AKVSLDNLFEQIKEGELKELNLILKADVQ 401 (594)
T ss_pred CCCEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHEEEEEEECCC
T ss_conf 65215551355667677504775050456788877666677777754443-32247778876421420010045750453
Q ss_pred CCHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHCCCEEEEEEHHHHHHHH
Q ss_conf 31234555421157653565788512685757788764325-98799963899989999999839859975026789999
Q gi|254780787|r 694 GSVEAIVDSLGALKNSEVCLSIVHSSVGAINETDVSLAKAS-GAVIFGFNVRASSQARVLAIKDEIKILYYKIIYDLLDS 772 (884)
Q Consensus 694 gs~eal~~~l~~~~~~ev~i~v~~~~VG~v~~~DV~~A~~~-~a~Il~FnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~ 772 (884)
|+++++..++..+...++++.++|+++|.++++|+.+|+++ +++++|||+.++..++..++..+|.++.|++||.|+|+
T Consensus 402 g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (594)
T TIGR00487 402 GSLEALKNSLEKLNNEEVKVKVIHSGVGGITETDISLASASEGAILIGFNVRPDGNAKNLAEAEGVDLRLYSVIYKLLDE 481 (594)
T ss_pred CHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHEECCCCEEEEEEECCCCCCHHHHHHHHCCEEHHHHHHHHHHHH
T ss_conf 03799998886235343378986224564210100110036770798640355530234344313300013557899999
Q ss_pred HHHHHHHHCCCEEEEEEEEEEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHCCHHHHHHHC
Q ss_conf 99999630694047888878999788733898707899985217846980799669989982262576644600668727
Q gi|254780787|r 773 IKDSMSELLSPEIRETFLGNAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRFKDEVSEVHA 852 (884)
Q Consensus 773 ~~~~~~~~l~~~~~~~~~g~a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~ 852 (884)
++..|.+++.|.+.+..+|.++|+++|+.++.|.|+||.|..|.++++..++++|++.+||.|.+.||++||++|+++..
T Consensus 482 ~~~~~~g~~~p~~~~~~~g~~~~~~~~~~~~~g~~~g~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ 561 (594)
T TIGR00487 482 IEAALEGLLDPEYEEEIIGLAEVRAVFNVPKIGTIAGCYVTEGVIKRGNPLRLLRDGVVIFEGEIDSLKRFKDDVKEVSE 561 (594)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCEEECCCCCEEEECCEEEECCCHHHHHHHCCHHHHHHC
T ss_conf 99987420151245555103555555315642210121021451212664124316525750523444430001577633
Q ss_pred CCEEEEEEECCEEEEECCEEEEEEEEEEEECC
Q ss_conf 97669997284110058989998899985149
Q gi|254780787|r 853 GQDCGMAFEKYDNIQAGDMIECFSIEHIKRSL 884 (884)
Q Consensus 853 g~ecgi~~~~~~~~~~gD~i~~~~~~~~~~~l 884 (884)
|+||||.+++||||++||++++|+..+.+|++
T Consensus 562 g~~cg~~~~~~~~~~~gd~~~~~~~~~~~~~~ 593 (594)
T TIGR00487 562 GYECGIGIDNYNDIKEGDIIEAFEVIEVKRTL 593 (594)
T ss_pred CCCCCEEECCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 32022132265543224213345555554205
No 8
>KOG1144 consensus
Probab=100.00 E-value=0 Score=819.24 Aligned_cols=477 Identities=28% Similarity=0.414 Sum_probs=389.6
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECC------------------CCEEEE
Q ss_conf 12410012553038986236850446777886422210012310001214999517------------------843888
Q gi|254780787|r 373 ADSESDLDIRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQ------------------GKNITF 434 (884)
Q Consensus 373 ~~~~~~~~~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~------------------~~~~~~ 434 (884)
..+++...+|+||||||||||+|||+|||+||+||||.||||||||+|||++||.. ...+.+
T Consensus 465 ~~~~~~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lv 544 (1064)
T KOG1144 465 SANESTENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLV 544 (1064)
T ss_pred HCCCCHHHCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 21546132368637897111266057888762055322445660000054115267789999998750233137870489
Q ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHH--------
Q ss_conf 851661578999866642068059999836674023577789899709941561233124433200022100--------
Q gi|254780787|r 435 LDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSL-------- 506 (884)
Q Consensus 435 iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~-------- 506 (884)
||||||++|+|+|+||+|+|||||||||+|||++|||||||+||+.+++|||||||||||+|+|....+..+
T Consensus 545 IdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~ 624 (1064)
T KOG1144 545 IDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQK 624 (1064)
T ss_pred ECCCCCHHHHHHHHCCCCCCCEEEEEEEHHCCCCCCHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 65887255555665043345537778531116774206789988754897598610134440442489831999998744
Q ss_pred ------------------HCCCCC------CCCCCCCCEEEEEEECCCCCCCCCCCCHHCCCCCCC-CCCCCCCCCCCEE
Q ss_conf ------------------001320------001234740363110024774112210000233334-2000348666416
Q gi|254780787|r 507 ------------------LKHDVF------VESMGGDILDVEISAKNNLNLDKLLDAILLQAEMLD-LKTSINRKAEGIV 561 (884)
Q Consensus 507 ------------------~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 561 (884)
.+.++. ..+++..+-+||+||++|+|+.+|+-.++.+....+ -+........++|
T Consensus 625 k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~y~~ev~cTV 704 (1064)
T KOG1144 625 KDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLAYVDEVQCTV 704 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_conf 78999999999999999997110443423146746558862122136788078999999999999998774240100478
Q ss_pred EEEEEECCCCCCHHHHHHCCHHHCCC-CCCCCCCC---CCCEECCCCC----------CCCCCCCCCCCCCCCCCCC-CC
Q ss_conf 77788637762000000000000000-00256655---5420001466----------5322100001222111123-47
Q gi|254780787|r 562 VEGKLDRGRGPVVTVLVQKGTLSKGN-ILVVGDQW---GKIRALFNDR----------GQGISKAVPSMPIEVLGLQ-GM 626 (884)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~---~~v~~~~~~~----------~~~~~~~~~~~~~~~~~~~-~~ 626 (884)
++.....|.|+..++++.+|.|+.|| ++|||+.. +.||+++.+. ..+.++...++.+.|.... .-
T Consensus 705 lEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hhkEvkaA~GiKI~A~~LEk 784 (1064)
T KOG1144 705 LEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRALLTPQPLKELRVKGTYVHHKEVKAAQGIKIAAKDLEK 784 (1064)
T ss_pred EEEEEECCCCCEEEEEEECCEECCCCEEEECCCCCCHHHHHHHHCCCCCHHHHCCCCCEEEHHHHHHHCCCHHHHCCHHH
T ss_conf 99875237771689998756552698799827998616888976388644764105533236675653050245325677
Q ss_pred CCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf 55554043124203668999999999999998776644565788885200012302334443331023123455542115
Q gi|254780787|r 627 PMAGDKFGVVDSESRAREIAQYRQRVTRNKSMARRLGSHSALEKLVKNANISSKMKEFPVIIKGDVQGSVEAIVDSLGAL 706 (884)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~d~~gs~eal~~~l~~~ 706 (884)
..+|..++++..+.....+.+...+ .+...+ ...+....++++.+.+.||||||..+|..
T Consensus 785 aiaG~~l~VvgpeDd~e~lk~~~m~---------------dl~~~l----~~Id~sgeGv~vqastlgslealleflk~- 844 (1064)
T KOG1144 785 AIAGTRLLVVGPEDDIEELKEEAME---------------DLESVL----SRIDKSGEGVYVQASTLGSLEALLEFLKT- 844 (1064)
T ss_pred HHCCCEEEEECCCCCHHHHHHHHHH---------------HHHHHH----HHHHCCCCCEEEEECCCCHHHHHHHHHHH-
T ss_conf 7537756875775448999999999---------------999999----87623687358872442009999999860-
Q ss_pred CCCEEEEEEEECCCCCCCHHHHHHHHHC------CCEEEEECCCCCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHH
Q ss_conf 7653565788512685757788764325------9879996389998999999983985997502678999999999630
Q gi|254780787|r 707 KNSEVCLSIVHSSVGAINETDVSLAKAS------GAVIFGFNVRASSQARVLAIKDEIKILYYKIIYDLLDSIKDSMSEL 780 (884)
Q Consensus 707 ~~~ev~i~v~~~~VG~v~~~DV~~A~~~------~a~Il~FnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~ 780 (884)
++|||.++|||||+++|||+|+++ ||+||||||+++.+|+.+|+++||+||.+||||||||.|++|.+.+
T Consensus 845 ----~kIPv~gi~IGPVhKKDvmka~~MlEk~kEyA~iLaFDVkv~~eA~e~Ad~~gVkIF~adiIYhLfD~f~~y~e~~ 920 (1064)
T KOG1144 845 ----VKIPVSGIGIGPVHKKDVMKASVMLEKKKEYATILAFDVKVEREARELADEMGVKIFCADIIYHLFDAFTKYIEEI 920 (1064)
T ss_pred ----CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHH
T ss_conf ----5764024434640288899999887514201378887667407899988752735530337999999999999999
Q ss_pred CCCEEEE-----EEEEEEEEEE--EEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHCCHHHHHHHCC
Q ss_conf 6940478-----8887899978--87338987078999852178469807996699899822625766446006687279
Q gi|254780787|r 781 LSPEIRE-----TFLGNAEVLE--VFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRFKDEVSEVHAG 853 (884)
Q Consensus 781 l~~~~~~-----~~~g~a~v~~--vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g 853 (884)
.+...++ .++|.+.|+. +|+ ++.|.|.|+.|.+|.++.|++++|.. ...|+.|+|.||.++++.|.++++|
T Consensus 921 ke~kkke~~~~AvFPc~L~ilpn~ifN-~RdPiv~GV~V~~GilkiGTPiCv~~-r~~~~lG~v~Sie~Nh~~vd~akkG 998 (1064)
T KOG1144 921 KEEKKKESADEAVFPCVLQILPNCIFN-KRDPIVLGVDVEEGILKIGTPICVPK-REFIDLGRVASIENNHKPVDYAKKG 998 (1064)
T ss_pred HHHHHHHCCCCEEEEEEHHHHHHHHCC-CCCCEEEEEEEECCEEECCCCEEEEC-CCEEEEEEEEEECCCCCCCHHHHCC
T ss_conf 998776406742554202021476426-78985987770027353388237742-3316765665311267645034267
Q ss_pred CEEEEEEECCE---------EEEECCEEEEE
Q ss_conf 76699972841---------10058989998
Q gi|254780787|r 854 QDCGMAFEKYD---------NIQAGDMIECF 875 (884)
Q Consensus 854 ~ecgi~~~~~~---------~~~~gD~i~~~ 875 (884)
++++|.|++.| .|-..|+|++.
T Consensus 999 qeVaiKie~~~~e~~~mfGRHf~~~D~LyS~ 1029 (1064)
T KOG1144 999 QEVAIKIEASNGEEQKMFGRHFDMEDILYSH 1029 (1064)
T ss_pred CEEEEEEECCCCCCCCHHHCCCCCCCHHHHH
T ss_conf 6689997158987744021246865128877
No 9
>TIGR00491 aIF-2 translation initiation factor aIF-2; InterPro: IPR004544 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this family undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation.; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=100.00 E-value=0 Score=729.48 Aligned_cols=462 Identities=28% Similarity=0.419 Sum_probs=377.6
Q ss_pred EECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCC------------------CEEEEEECCCHHHHHHHHHHH
Q ss_conf 62368504467778864222100123100012149995178------------------438888516615789998666
Q gi|254780787|r 389 MGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQG------------------KNITFLDTPGHAAFYEMRARG 450 (884)
Q Consensus 389 ~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~------------------~~~~~iDtPGh~~f~~~r~rg 450 (884)
-|-|=| -|||||+||+|.|+..|||||||||||+++|++. +.+.|||||||++||+||.||
T Consensus 557 nGivvh-nTTLLDkIRks~Vv~kEAGgiTQhiGAsevP~dVI~~ic~Dl~K~f~i~~~iPGLLfIDTPGHeaFt~LRkRG 635 (1145)
T TIGR00491 557 NGIVVH-NTTLLDKIRKSAVVKKEAGGITQHIGASEVPLDVIKKICGDLLKKFKIKLKIPGLLFIDTPGHEAFTNLRKRG 635 (1145)
T ss_pred CCEEEE-CCCCCCCCCCCCEEEECCCCCCEECCCEECCHHHHHHHCHHHHHCEEEEEECCEEEEEECCCCHHHHCCCCCC
T ss_conf 664785-1433100033401324778840100666546689865132121140257865801586078623442201001
Q ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCC-------------
Q ss_conf 4206805999983667402357778989970994156123312443320002210000132000123-------------
Q gi|254780787|r 451 ARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMG------------- 517 (884)
Q Consensus 451 ~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~------------- 517 (884)
++++||||||||+++|++|||.|||++||.++||||||.|||||..+|..+.-..|++....|+...
T Consensus 636 GAlADlAILvVDInEGfkpQT~EA~~ILr~~ktPFvVAANKIDrI~GW~~~e~~~fl~~~~kq~~~~~~~l~~~~y~lv~ 715 (1145)
T TIGR00491 636 GALADLAILVVDINEGFKPQTEEALNILRSFKTPFVVAANKIDRIPGWKSHEGRPFLESYEKQEQRVKQNLDKKVYNLVI 715 (1145)
T ss_pred CHHHHHHEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 03630110134102698403489999961289872895033055889645488516666541116788668877898873
Q ss_pred ---------------------CCCEEEEEEECCCCCCCCCCCCHH--CCCC-CCCCCCCCCCCCCCEEEEEEEECCCCCC
Q ss_conf ---------------------474036311002477411221000--0233-3342000348666416777886377620
Q gi|254780787|r 518 ---------------------GDILDVEISAKNNLNLDKLLDAIL--LQAE-MLDLKTSINRKAEGIVVEGKLDRGRGPV 573 (884)
Q Consensus 518 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (884)
..+-.+|+||++|+|+.+||-.+. .|.. ...|+..-..++.|+++|..-..|.|.+
T Consensus 716 ~kPL~e~GF~AerFdRv~Dft~tVaviPvSA~tGEGIpelL~~l~GLAQ~YL~~~Lkl~~eG~AkGtiLEVKEe~GLG~T 795 (1145)
T TIGR00491 716 KKPLAEEGFEAERFDRVRDFTRTVAVIPVSAVTGEGIPELLLILAGLAQKYLEEKLKLEVEGPAKGTILEVKEEKGLGVT 795 (1145)
T ss_pred CCCHHHCCCCCCCCCCEECEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCCCCEEEEEEEEECCCCCE
T ss_conf 02211258871225520000113689886656789748999999888889988526742227865158987850689716
Q ss_pred HHHHHHCCHHHCCCCCCCCCC----CCCCEECCCCCC-----------CCCCCCCCCCCCCCCCCC-CCCCCCCEEEECC
Q ss_conf 000000000000000025665----554200014665-----------322100001222111123-4755554043124
Q gi|254780787|r 574 VTVLVQKGTLSKGNILVVGDQ----WGKIRALFNDRG-----------QGISKAVPSMPIEVLGLQ-GMPMAGDKFGVVD 637 (884)
Q Consensus 574 ~~~~~~~g~~~~~~~~~~~~~----~~~v~~~~~~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 637 (884)
++++++.|+|+.||+++.++. .++||+++.+.- ..+.+....-.+.|.... ....||.++..+.
T Consensus 796 ~DaviYdGilk~~D~iv~~~~d~vivT~vkAlLkP~Pl~emr~~~~~~~~~~ev~AAag~kv~A~~~~~~~Ag~P~y~v~ 875 (1145)
T TIGR00491 796 IDAVIYDGILKKGDIIVLAGKDDVIVTRVKALLKPRPLEEMREERKKFKKVDEVVAAAGVKVAAPELDKVLAGSPIYVVV 875 (1145)
T ss_pred EEEEEECCEECCCCEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCEEEECCEEEECCCCHHHHHCCCCEEEEE
T ss_conf 99999557712078899813898057667863488883687510430475215773203587277610454577348951
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 20366899999999999999877664456578888520001230233-44433310231234555421157653565788
Q gi|254780787|r 638 SESRAREIAQYRQRVTRNKSMARRLGSHSALEKLVKNANISSKMKEF-PVIIKGDVQGSVEAIVDSLGALKNSEVCLSIV 716 (884)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ik~d~~gs~eal~~~l~~~~~~ev~i~v~ 716 (884)
+........+.......+. .-..++. ++++||||.||||||...|... .|||-
T Consensus 876 ~~~~iek~~e~v~~E~e~i---------------------~i~~d~~yGvvvKADtLGSLEA~v~~Lr~~-----~vpIk 929 (1145)
T TIGR00491 876 SEEEIEKVKEEVLKEVEEI---------------------KIETDEEYGVVVKADTLGSLEALVNELRKE-----GVPIK 929 (1145)
T ss_pred CCCHHHHHHHHHHHHHHHH---------------------HHCCCCCCEEEEEECCCHHHHHHHHHHHHC-----CCCEE
T ss_conf 7822789999998767755---------------------421365111799855851189999999857-----89676
Q ss_pred ECCCCCCCHHHHHHHHHC------CCEEEEECCCCCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHCCCEEE---E
Q ss_conf 512685757788764325------9879996389998999999983985997502678999999999630694047---8
Q gi|254780787|r 717 HSSVGAINETDVSLAKAS------GAVIFGFNVRASSQARVLAIKDEIKILYYKIIYDLLDSIKDSMSELLSPEIR---E 787 (884)
Q Consensus 717 ~~~VG~v~~~DV~~A~~~------~a~Il~FnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~l~~~~~---~ 787 (884)
.|.||||+++||.-|++. |++|+|||||+-+.|++.+++.+|+||++||||+|+|+|++|.++--+.+++ |
T Consensus 930 ~AdvGDv~krDvv~a~~~~~~~~~~Gai~AFnVK~Lp~~~~e~~kydik~f~~~iIY~L~e~f~~w~~~~~e~~k~~~~E 1009 (1145)
T TIGR00491 930 KADVGDVSKRDVVEAEIVKQEAKKYGAIVAFNVKVLPGAEKELKKYDIKLFSDNIIYKLMEEFEKWIEEIEEEKKRKKLE 1009 (1145)
T ss_pred EEECCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 61038877420000756640178600899841555700243666578059725601022377899988888877643330
Q ss_pred EEEEEEEEE----EEEECCCCCCEEEEEEEEEEEECCCEEEEEE-CCEEEEEEEEHHHHHCCHHHHHHHCCCEEEEEEEC
Q ss_conf 888789997----8873389870789998521784698079966-99899822625766446006687279766999728
Q gi|254780787|r 788 TFLGNAEVL----EVFAVTKLGNVAGCKVSEGKVERGSGVRLIR-NSTVIYEGKLKTLKRFKDEVSEVHAGQDCGMAFEK 862 (884)
Q Consensus 788 ~~~g~a~v~----~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r-~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~ 862 (884)
.++-+|.|+ .|||.|+ |+|+|+.|+.|+|++|.+ ||| ||..| |.|.+||-.+++|+++..|++++|+|+|
T Consensus 1010 ~likPa~Ikllp~~vFRrs~-PaI~GVeVL~G~lR~g~~--L~~~DG~~v--G~V~~~qd~g~nl~~A~~g~~~aiAI~d 1084 (1145)
T TIGR00491 1010 ALIKPAKIKLLPELVFRRSD-PAIVGVEVLAGVLRRGYP--LIKEDGEKV--GEVREIQDKGKNLKSASAGKEVAIAIED 1084 (1145)
T ss_pred HCCCCEEEEECCCEECCCCC-CEEEEEEECCCEECCCCC--CCHHCCCCC--CCEEEEHHCCCCCEECCCCCCCCEEECC
T ss_conf 00177025541330023367-437988861435117887--611020002--4200100337730001047866513427
Q ss_pred -C---EEEEECCEEEEEEEEEEEE
Q ss_conf -4---1100589899988999851
Q gi|254780787|r 863 -Y---DNIQAGDMIECFSIEHIKR 882 (884)
Q Consensus 863 -~---~~~~~gD~i~~~~~~~~~~ 882 (884)
. ..+.+||.|+.=..|...|
T Consensus 1085 rvv~gr~~~egd~lYVdvPE~H~~ 1108 (1145)
T TIGR00491 1085 RVVLGRQVEEGDELYVDVPERHVK 1108 (1145)
T ss_pred CEEEEEEECCCCEEEEECCCHHHH
T ss_conf 178810761786688815803589
No 10
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=100.00 E-value=5.2e-42 Score=305.34 Aligned_cols=163 Identities=60% Similarity=0.871 Sum_probs=150.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEEC---CCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 03898623685044677788642221001231000121499951---784388885166157899986664206805999
Q gi|254780787|r 384 PVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAY---QGKNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 384 pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~---~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
|||||+||+|||||||+++|++++++..++|||||+|++|.+++ .+..++|||||||++|++||.||++.+|++|||
T Consensus 1 P~VaivG~~n~GKSTL~n~L~~~~~~~~~~~g~T~~i~~~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~~~~aD~~ilv 80 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILV 80 (168)
T ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCEEECCCCEEEECEEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCEEEEE
T ss_conf 98999948998598999998586750451698168715399998825887189998998167799999998626889999
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCC-CCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 98366740235777898997099415612331244332000221000013200-01234740363110024774112210
Q gi|254780787|r 461 LAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFV-ESMGGDILDVEISAKNNLNLDKLLDA 539 (884)
Q Consensus 461 v~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (884)
||+.+|+++||+|++.+++..++|+|+++||||++..+++++..++.+..... ..+++....+|+||++|+|++.|+++
T Consensus 81 vda~~g~~~~~~~~~~~l~~~~~p~ivviNKiD~~~~~~~~v~~~l~~~~~~~~~~~~~~~~iIpvSA~tG~gi~~L~~~ 160 (168)
T cd01887 81 VAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEA 160 (168)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 86466754589999999987699789999893089879899999999975452455289875999989999899999999
Q ss_pred HHCCCCC
Q ss_conf 0002333
Q gi|254780787|r 540 ILLQAEM 546 (884)
Q Consensus 540 ~~~~~~~ 546 (884)
+...++.
T Consensus 161 i~~~a~~ 167 (168)
T cd01887 161 ILLLAEK 167 (168)
T ss_pred HHHHHHC
T ss_conf 9999715
No 11
>TIGR00475 selB selenocysteine-specific translation elongation factor; InterPro: IPR004535 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation . This family describes the elongation factor SelB, a close homologue of EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This family should not include an equivalent protein for eukaryotes. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm.
Probab=100.00 E-value=4.1e-42 Score=306.06 Aligned_cols=230 Identities=28% Similarity=0.365 Sum_probs=191.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHH---HH--HCC--CCCCEECCCEEEEECCC--CEEEEEECCCHHHHHHHHHHHHHCCC
Q ss_conf 38986236850446777886422---21--001--23100012149995178--43888851661578999866642068
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKAD---VA--KGE--IGGITQHIGAYQVAYQG--KNITFLDTPGHAAFYEMRARGARVTD 455 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~---~~--~~e--~ggitq~iga~~~~~~~--~~~~~iDtPGh~~f~~~r~rg~~~~d 455 (884)
+|..-||||||||+||-+|...+ .. ..| ..|||+.||.-+++.+. .+++|||.|||+-|...+..|.+..|
T Consensus 2 ~~at~GHvDHGKT~L~k~LTgi~stsa~~lPeEkqKRG~tIDLGfAy~~l~~~n~~l~~iDvPGHe~fl~n~lAg~~~i~ 81 (627)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIDSTSADRLPEEKQKRGMTIDLGFAYLPLPDINKRLGFIDVPGHEKFLSNALAGIGGID 81 (627)
T ss_pred EEEEECCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCEEECCCEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 68731244504799999850643012312774102576624604200367777713347855973899999866756540
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 05999983667402357778989970994-15612331244332000221000013200012347403631100247741
Q gi|254780787|r 456 IAVLVLAADEEIMPQAIESINHAKAADVS-IIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLD 534 (884)
Q Consensus 456 ~~ilvv~~~~g~~~qt~e~~~~~~~~~~p-~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (884)
.|+||||+++|||+||.||+.+|+..+.| .||||||+|+.+...-.....+....+....+..+...+.+||.+|+|++
T Consensus 82 ~alLvVda~eG~~~QT~EHL~vl~~l~~~~~ivvltK~D~~d~~~~~~~E~~~~~~l~~~~~~~n~~~~~~SA~tG~Gi~ 161 (627)
T TIGR00475 82 AALLVVDADEGVMTQTKEHLAVLKLLGIPELIVVLTKADRVDEEEVKRVEEELKEILEEYEFLKNAKIFKTSAKTGQGIE 161 (627)
T ss_pred HHEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH
T ss_conf 10035415778853238999999970896199997346745658999999999999876432115747999134687778
Q ss_pred CCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCCCCC--CCCCCCEECCCCCCCCCCCC
Q ss_conf 1221000023333420003486664167778863776200000000000000000256--65554200014665322100
Q gi|254780787|r 535 KLLDAILLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILVVG--DQWGKIRALFNDRGQGISKA 612 (884)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~ 612 (884)
+|-+.+....+..+..-+...|....+-.++.-+|.|+|.|+.++.|++++||.+..- ....|||+|-+ .+..+..|
T Consensus 162 ~Lk~~L~~L~e~~~~~r~~~~~lr~~iD~aF~vKG~GtVvtGt~f~G~VkvGD~~~~~pig~~~rvk~~~~-~~~~~~~A 240 (627)
T TIGR00475 162 ELKKELKNLLESLDIKRDKQKPLRLAIDRAFKVKGAGTVVTGTAFSGEVKVGDKLVLEPIGKEVRVKAIQA-QNQDVEKA 240 (627)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEEEEEEEEEEEEECCEEEEEECCCEEEEEEEEC-CCCCCCEE
T ss_conf 99999986577765542015666510321558703024687557841689888899810583678864020-58852210
Q ss_pred CCC
Q ss_conf 001
Q gi|254780787|r 613 VPS 615 (884)
Q Consensus 613 ~~~ 615 (884)
..+
T Consensus 241 ~AG 243 (627)
T TIGR00475 241 VAG 243 (627)
T ss_pred ECH
T ss_conf 020
No 12
>TIGR01394 TypA_BipA GTP-binding protein TypA; InterPro: IPR006298 This bacterial (and Arabidopsis) protein, termed TypA or BipA, is a GTP-binding protein. It is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.; GO: 0005525 GTP binding, 0005622 intracellular.
Probab=100.00 E-value=1.6e-42 Score=308.76 Aligned_cols=237 Identities=30% Similarity=0.372 Sum_probs=190.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHH-HHCC-C----------------CCCEECCCEEEEECCC----CEEEEEECCCHHHH
Q ss_conf 89862368504467778864222-1001-2----------------3100012149995178----43888851661578
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADV-AKGE-I----------------GGITQHIGAYQVAYQG----KNITFLDTPGHAAF 443 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~-~~~e-~----------------ggitq~iga~~~~~~~----~~~~~iDtPGh~~f 443 (884)
|+|+.|||||||||.|.|.+.+- ...+ . .|||+----|.+.|++ .+|++||||||++|
T Consensus 4 IAIIAHVDHGKTTLVD~LL~Qsgf~f~~~~~~~~ER~MDSNDLErERGITILaKNTav~y~g~dG~~~INIvDTPGHADF 83 (609)
T TIGR01394 4 IAIIAHVDHGKTTLVDALLKQSGFTFRADNEAVAERVMDSNDLERERGITILAKNTAVRYNGKDGVTKINIVDTPGHADF 83 (609)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCC
T ss_conf 89998806994368988888765886415883213540676521001552013003662528897189977816898878
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCC--CCCCCCCE
Q ss_conf 9998666420680599998366740235777898997099415612331244332000221000013200--01234740
Q gi|254780787|r 444 YEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFV--ESMGGDIL 521 (884)
Q Consensus 444 ~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 521 (884)
-=...|++++-|.+||||||.+|+||||...++-|-+.+++.||+||||||+.+.++.+.++..+..... .+..-+-+
T Consensus 84 GGEVERvL~MVDGvlLlVDA~EGPMPQTrFVL~KAL~~gLkPIVViNKiDrp~ARP~eV~d~vFDLF~~LgA~deQLDFP 163 (609)
T TIGR01394 84 GGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFIELGADDEQLDFP 163 (609)
T ss_pred CCEEEEECEEEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf 86588733024058999857888988534789999956893699971347887883788757878888538880010125
Q ss_pred EEEEEECCC---------------CCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCC
Q ss_conf 363110024---------------77411221000023333420003486664167778863776200000000000000
Q gi|254780787|r 522 DVEISAKNN---------------LNLDKLLDAILLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKG 586 (884)
Q Consensus 522 ~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 586 (884)
.+..||+.| +++..||++|+ ........+++.|....|-..-.+...|.++++.|++|+++.|
T Consensus 164 ~vYASa~~G~A~l~~~~dg~~~~~~~m~PLFd~I~--~hvPaP~~~~d~PlQmlvt~ldy~~y~GRI~~GRv~~G~vk~G 241 (609)
T TIGR01394 164 IVYASARAGWASLDKDKDGLDDDSEDMAPLFDAIL--RHVPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKG 241 (609)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HCCCCCCCCCCCCHHHEEEECCCCCCCCEEEEEEEEECEECCC
T ss_conf 67665236720144665778872201789998986--4068889888762421000110146776699998750565468
Q ss_pred CCCCCCCC------CCCCEECCCCCCC---CCCCCCCCCCCCCCCCC
Q ss_conf 00025665------5542000146653---22100001222111123
Q gi|254780787|r 587 NILVVGDQ------WGKIRALFNDRGQ---GISKAVPSMPIEVLGLQ 624 (884)
Q Consensus 587 ~~~~~~~~------~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~ 624 (884)
+.+..... .+||..++.-.|. .+.+|..+.+|-|.|+.
T Consensus 242 q~V~~~~~d~g~~~~~ri~~L~~f~GL~R~~~d~A~AGDIvAvaG~~ 288 (609)
T TIGR01394 242 QQVALMKRDDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLE 288 (609)
T ss_pred CEEEEEECCCCEEEEEEEEEEEECCCCEEEECCCCCCCCEEEEECCC
T ss_conf 64798724696897777645420157110004557987789990779
No 13
>TIGR01393 lepA GTP-binding protein LepA; InterPro: IPR006297 LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function of the proteins in this family are unknown. ; GO: 0005525 GTP binding.
Probab=100.00 E-value=7.3e-42 Score=304.32 Aligned_cols=200 Identities=28% Similarity=0.417 Sum_probs=176.6
Q ss_pred EEEEEECCCCCHHHHHHHHHH-HHHHHCC--------------CCCCEECCCEEEEECC------CCEEEEEECCCHHHH
Q ss_conf 389862368504467778864-2221001--------------2310001214999517------843888851661578
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRK-ADVAKGE--------------IGGITQHIGAYQVAYQ------GKNITFLDTPGHAAF 443 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~-~~~~~~e--------------~ggitq~iga~~~~~~------~~~~~~iDtPGh~~f 443 (884)
-+||+.||||||+||-|+|-. |+..+.- -.|||...-|-.+.+. .+.++|||||||.+|
T Consensus 5 NFsIIAHIDHGKSTLADRlle~T~~~s~R~m~~Q~LD~MDlERERGITIK~qaV~l~Yk~~~DGe~Y~LNLIDTPGHVDF 84 (598)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEKTGAVSEREMREQVLDSMDLERERGITIKAQAVRLKYKVAKDGETYVLNLIDTPGHVDF 84 (598)
T ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCCHHHHHCCCCCCCEEECCCCEEECCCEEEEEEEECCCCEEEEEEECCCCCCCC
T ss_conf 26788462489324889999861745620254305775100000582011563475337533887889964528897212
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEE
Q ss_conf 99986664206805999983667402357778989970994156123312443320002210000132000123474036
Q gi|254780787|r 444 YEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDV 523 (884)
Q Consensus 444 ~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (884)
|...+|.+..|-+|+|||||-.||+.||+-.+.||-.+++-+|-+|||||+|.++++++..++-+..-.... ..+
T Consensus 85 sYEVSRSLAACEGALL~VDA~QGvEAQT~aN~YlAlE~dLeIIPViNKIDLP~Adpe~v~~eIe~~iGld~~-----~ai 159 (598)
T TIGR01393 85 SYEVSRSLAACEGALLLVDAAQGVEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLDAS-----EAI 159 (598)
T ss_pred CHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCC-----CCE
T ss_conf 737888888716403561410323588899998875618758477825368888858999987654188964-----303
Q ss_pred EEEECCCCCCCCCCCCHHCCCCCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCCCC
Q ss_conf 3110024774112210000233334200034-8666416777886377620000000000000000025
Q gi|254780787|r 524 EISAKNNLNLDKLLDAILLQAEMLDLKTSIN-RKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILVV 591 (884)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 591 (884)
.+||++|.|++++|++|. ......+-++. .|..|.++|++.|..+|.++.+.|..|+++.||-+-.
T Consensus 160 ~~SAKtG~Gi~e~LEaIv--~~vPpP~Gd~~DapLkALIFDS~YD~YrGVv~~vRv~~G~ik~gD~I~~ 226 (598)
T TIGR01393 160 LASAKTGIGIEEILEAIV--KRVPPPKGDPDDAPLKALIFDSHYDNYRGVVVLVRVFEGTIKKGDKIRF 226 (598)
T ss_pred EEEECCCCCHHHHHHHHH--HCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEECEECCCCEEEE
T ss_conf 875036788899988971--0181001138886632278843543865089999995268646988999
No 14
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=8.5e-40 Score=290.21 Aligned_cols=246 Identities=24% Similarity=0.276 Sum_probs=190.6
Q ss_pred EEEEEECCCCCHHHHHHHHHH-HHHHHC--C-------------CCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHH
Q ss_conf 389862368504467778864-222100--1-------------231000121499951784388885166157899986
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRK-ADVAKG--E-------------IGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRA 448 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~-~~~~~~--e-------------~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~ 448 (884)
-|+|++|||||||||.|+|.. |..... | ..|||+.-.++.+.|.+++|++||||||.+|+-...
T Consensus 7 NiaIIAHvDhGKTTL~d~lL~~tG~~~~~~~~~~~~mD~~~~ErERGITI~a~~~~~~~~~~~iNiIDTPGH~DF~gEVe 86 (607)
T PRK10218 7 NIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVE 86 (607)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
T ss_conf 48999756889889999999972898644541120147868898759726230489960878997865998543014889
Q ss_pred HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCC--CCCCCCCCEEEEEE
Q ss_conf 6642068059999836674023577789899709941561233124433200022100001320--00123474036311
Q gi|254780787|r 449 RGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVF--VESMGGDILDVEIS 526 (884)
Q Consensus 449 rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 526 (884)
|++++||.|||||||-+|+||||...|..|..+++|.|++||||||+.+.++.+..++.+.... ..+..-+.+.+..|
T Consensus 87 R~L~~~DGalLvVDA~eGv~pQT~~V~~~Al~~~l~~IvvINKiDr~~A~~~~V~~ei~dlfi~L~a~deqld~Pi~~as 166 (607)
T PRK10218 87 RVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYAS 166 (607)
T ss_pred HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCHHHHHH
T ss_conf 78976684899997887862458999999998799759972166766553578999999887404985677444355655
Q ss_pred ECCCC----------CCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCCCCCCCC-
Q ss_conf 00247----------7411221000023333420003486664167778863776200000000000000000256655-
Q gi|254780787|r 527 AKNNL----------NLDKLLDAILLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILVVGDQW- 595 (884)
Q Consensus 527 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~- 595 (884)
++.|. ++..||+++.- ........+..|..+.+.....|...|.++.+.++.|+++.|+.+......
T Consensus 167 a~~G~a~~~~~~~~~dl~pLldaIv~--~IPaP~~d~d~Plq~lV~~ldyD~YvGrI~igRV~sG~ik~Gd~V~~~~~~g 244 (607)
T PRK10218 167 ALNGIAGLDHEDMAEDMTPLYQAIVD--HVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEG 244 (607)
T ss_pred HHCCEECCCHHHHHHHCCHHHHHHHH--HCCCCCCCCCCCCCCEECCCCCCCCCCEEEEEEEECCEECCCCEEEEECCCC
T ss_conf 40650126823433313608899985--4879899988884101011235676764899999657485898436632796
Q ss_pred ----CCCEECCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf ----54200014665---322100001222111123475555404
Q gi|254780787|r 596 ----GKIRALFNDRG---QGISKAVPSMPIEVLGLQGMPMAGDKF 633 (884)
Q Consensus 596 ----~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (884)
++|..++...| ..+..+.++.++-+.|+..+ ..||.+
T Consensus 245 ~~~~~kV~kl~~~~gl~r~ev~~a~AGDIVAIaGl~d~-~iGDTl 288 (607)
T PRK10218 245 KTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGEL-NISDTV 288 (607)
T ss_pred EEEEEEEEEEEECCCCCCCCCCEECCEEEEEEECCCCC-CCCCEE
T ss_conf 38843467995115777400546524059999423357-777652
No 15
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=5.7e-39 Score=284.57 Aligned_cols=226 Identities=26% Similarity=0.323 Sum_probs=177.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHH---HHCCCCCCEECCCEEEEECC-CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 389862368504467778864222---10012310001214999517-84388885166157899986664206805999
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADV---AKGEIGGITQHIGAYQVAYQ-GKNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~---~~~e~ggitq~iga~~~~~~-~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
||.--||||||||||.-+|.+.+. .+.-..|||+.+|+.+++.+ +..+.|||.||||.|.++|.-|++-.|+++||
T Consensus 2 IigTAGHVDHGKTsLvkALTG~dtDRL~EEk~RGiTIdLGFA~~~l~~g~~~g~VDVPGHErFIknMlAG~~gid~vlLV 81 (615)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (615)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHCCEEEECEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHCCEEEEE
T ss_conf 89963654778999999986888656977897187277130755579997899987998389999997446437889999
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCC-EEEECCCCCCCC-CCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 983667402357778989970994-156123312443-320002210000132000123474036311002477411221
Q gi|254780787|r 461 LAADEEIMPQAIESINHAKAADVS-IIVAINKIDKLG-ADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLD 538 (884)
Q Consensus 461 v~~~~g~~~qt~e~~~~~~~~~~p-~iva~nk~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (884)
|||+||+||||.||+.++...+++ .||||||+|+.. .|.+.+..+..+.... ......+.+++|+.+|+|+++|.+
T Consensus 82 VAAdeGvMPQT~EHl~Il~lLgi~~giV~lTK~Dlvd~e~l~~v~~ei~~~l~~--t~l~~~pi~~vSa~tg~Gi~~L~~ 159 (615)
T PRK10512 82 VACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIDEVRRQVLEVLRE--YGFAEAKLFVTAATEGRGIDALRE 159 (615)
T ss_pred EECCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHC--CCCCCCCEEECCCCCCCCHHHHHH
T ss_conf 988998772379999999981998289999776568979999999999999844--787679752014566679999999
Q ss_pred CHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCCCC--CCCCCCCEECCCCCCCCCCCCCCCC
Q ss_conf 00002333342000348666416777886377620000000000000000025--6655542000146653221000012
Q gi|254780787|r 539 AILLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILVV--GDQWGKIRALFNDRGQGISKAVPSM 616 (884)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~ 616 (884)
.+...... ......+..-++..++..+|.|+|.|+.+..|++..||.+.. .....+||.+-. +|..+..+.+++
T Consensus 160 ~L~~l~~~---~~~~~~~fRL~IDRvFsvkG~GTVVTGTl~sG~v~~GD~l~i~P~~~~~rVR~iQ~-h~~~v~~a~aG~ 235 (615)
T PRK10512 160 HLLQLPER---EHASQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGVNKPMRVRALHA-QNQPTETAHAGQ 235 (615)
T ss_pred HHHHHCCC---CCCCCCCEEEEEEEEEECCCCCEEEEEEEECCEECCCCEEEECCCCCEEEEEEHHH-CCCCCCEECCCC
T ss_conf 99862556---66767761788311896268856999998147142699899869996798734776-798155732774
No 16
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=100.00 E-value=5.4e-39 Score=284.69 Aligned_cols=157 Identities=27% Similarity=0.336 Sum_probs=124.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHH-------HHCCCCCCEECCCEEEEE--------------CCCCEEEEEECCCHHHH
Q ss_conf 389862368504467778864222-------100123100012149995--------------17843888851661578
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADV-------AKGEIGGITQHIGAYQVA--------------YQGKNITFLDTPGHAAF 443 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~-------~~~e~ggitq~iga~~~~--------------~~~~~~~~iDtPGh~~f 443 (884)
-|||+||||||||||+|+|....- .....+|||+++|...+. +...+++|||||||+.|
T Consensus 2 NV~iiGHVDhGKTTL~~~L~~~~~~~~~D~~~eE~eRGITi~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~df 81 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASL 81 (192)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCHHHHCCHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCHHH
T ss_conf 89999761789999999998333501221358899779716710013785144221123234677458999877983889
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC-CHHHHHHHCCC--CCCCCCCCCC
Q ss_conf 99986664206805999983667402357778989970994156123312443320-00221000013--2000123474
Q gi|254780787|r 444 YEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADP-QKVRMSLLKHD--VFVESMGGDI 520 (884)
Q Consensus 444 ~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~-~~~~~~~~~~~--~~~~~~~~~~ 520 (884)
..++.+|++++|.|||||||++|+||||+||+.+++..++|+|||+||||+...+. .....++.... .....+..+.
T Consensus 82 ~~~~~~g~~~~D~ailvVda~~G~~~QT~eh~~~~~~~~~~~iv~iNK~D~v~~~~~~~~~~~i~~~l~~~l~~~~~~~~ 161 (192)
T cd01889 82 IRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNS 161 (192)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 98888887432652799987888878999999999985899799997412788157799999999999999865389998
Q ss_pred EEEEEEECCCCCCCCCCCCHH
Q ss_conf 036311002477411221000
Q gi|254780787|r 521 LDVEISAKNNLNLDKLLDAIL 541 (884)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~ 541 (884)
.++|+||++|.|+++|++.+.
T Consensus 162 ~iipiSA~~G~gi~eL~~~i~ 182 (192)
T cd01889 162 PIIPVSAKPGGGEAELGKDLN 182 (192)
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 499957898849899998887
No 17
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=100.00 E-value=8.9e-39 Score=283.22 Aligned_cols=153 Identities=33% Similarity=0.384 Sum_probs=131.1
Q ss_pred EEEEECCCCCHHHHHHHHHH-HHHHH---------------CCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHH
Q ss_conf 89862368504467778864-22210---------------012310001214999517843888851661578999866
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRK-ADVAK---------------GEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRAR 449 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~-~~~~~---------------~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~r 449 (884)
|||+||||||||||+|+|.. |.... ....|||+..+.+.+.+++.+++|||||||.+|+.++.+
T Consensus 5 v~iiGHvd~GKTTL~~~Ll~~tg~~~~~~~~~~~~~D~~~~E~ergiTI~~~~~~~~~~~~~~n~IDtPGH~dF~~~~~~ 84 (194)
T cd01891 5 IAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVER 84 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCCHHHHHHHHH
T ss_conf 99990689879999999999748763046521686147588887287633458999989988999989984777778987
Q ss_pred HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCC--CCCCCCCCCEEEEEEE
Q ss_conf 64206805999983667402357778989970994156123312443320002210000132--0001234740363110
Q gi|254780787|r 450 GARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDV--FVESMGGDILDVEISA 527 (884)
Q Consensus 450 g~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 527 (884)
|+++||+|||||||.+|+||||.++|.++...++|+||++||||++.++.+++..++.+... ....+..+.+.+++||
T Consensus 85 ~~~~~D~ailVVdA~~Gv~~QT~~~l~~a~~~~~~~iv~iNK~D~~~a~~~~v~~ei~~~~~~~~~~~~~~~~pii~~SA 164 (194)
T cd01891 85 VLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASA 164 (194)
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC
T ss_conf 76434467898653789758999999999872997499885645898889999999999998639993335885787256
Q ss_pred CCCCCCCCCCC
Q ss_conf 02477411221
Q gi|254780787|r 528 KNNLNLDKLLD 538 (884)
Q Consensus 528 ~~~~~~~~~~~ 538 (884)
++|.+.+++.+
T Consensus 165 ~~G~~~d~~~~ 175 (194)
T cd01891 165 KNGWASLNLED 175 (194)
T ss_pred CCCCCCCCCCC
T ss_conf 55335778865
No 18
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=8.5e-40 Score=290.18 Aligned_cols=201 Identities=29% Similarity=0.419 Sum_probs=173.5
Q ss_pred EEEEEECCCCCHHHHHHHHH-HHHHH-HCCC-------------CCCEECCCEEEEECC-----CCEEEEEECCCHHHHH
Q ss_conf 38986236850446777886-42221-0012-------------310001214999517-----8438888516615789
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIR-KADVA-KGEI-------------GGITQHIGAYQVAYQ-----GKNITFLDTPGHAAFY 444 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r-~~~~~-~~e~-------------ggitq~iga~~~~~~-----~~~~~~iDtPGh~~f~ 444 (884)
-+||++|||||||||.|+|. .|+.. ..+. .|||.+--+..+.|. .+.++|||||||.+|+
T Consensus 9 Nf~IiAHIDhGKSTLaDrlL~~tg~i~~~~~~~q~lD~m~~ErERGITIka~~v~~~y~~~~g~~y~lNLIDTPGHVDF~ 88 (601)
T PRK05433 9 NFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYQLNLIDTPGHVDFS 88 (601)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHCCCEEEEEEEEEEEECCCCCEEEEEEECCCCCCCCC
T ss_conf 58999943788888999999970997744323331454155765583697867999988489967999985489856645
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEE
Q ss_conf 99866642068059999836674023577789899709941561233124433200022100001320001234740363
Q gi|254780787|r 445 EMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVE 524 (884)
Q Consensus 445 ~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (884)
...+|.+++||.|||||||..||||||+..+.+|..+++++|.+|||||++.++++++..++.+..-...+ ..+.
T Consensus 89 ~EVsRSL~aceGalLlVDa~qGVqaQT~an~~~A~~~~L~iIpviNKIDlp~Ad~e~v~~qi~~~igl~~~-----eil~ 163 (601)
T PRK05433 89 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDIIGIDAS-----DAVL 163 (601)
T ss_pred EEEEEEHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCHH-----HHHH
T ss_conf 04556033407259999768785600699999999879965777861468889989999999988689647-----7777
Q ss_pred EEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCCCCC
Q ss_conf 11002477411221000023333420003486664167778863776200000000000000000256
Q gi|254780787|r 525 ISAKNNLNLDKLLDAILLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILVVG 592 (884)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 592 (884)
+||++|.|++++|+++.- .....+.++..|..+.+++++.|..+|.++.+.++.|+++.|+.+..-
T Consensus 164 vSAKtG~GV~~lLdaIV~--~iP~P~gd~~~PL~ALIFDS~yD~YrGvV~~vRV~~G~lk~Gd~I~~~ 229 (601)
T PRK05433 164 VSAKTGIGIEEVLEAIVE--RIPPPKGDPDAPLKALIFDSWYDPYRGVVVLVRVVDGTLKKGDKIKMM 229 (601)
T ss_pred HHHHCCCCHHHHHHHHHH--HCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEEEECCEECCCCEEEEE
T ss_conf 752338887999999997--479999998734312012303046788079999408877258525641
No 19
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=3.5e-38 Score=279.16 Aligned_cols=235 Identities=27% Similarity=0.294 Sum_probs=164.3
Q ss_pred CCCCCE-EEEEECCCCCHHHHHHHHHHHH-----------------HHHCCCCCCEECCCEEEEECCCCEEEEEECCCHH
Q ss_conf 255303-8986236850446777886422-----------------2100123100012149995178438888516615
Q gi|254780787|r 380 DIRPPV-VTIMGHVDHGKTSLLDAIRKAD-----------------VAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHA 441 (884)
Q Consensus 380 ~~R~pv-v~v~ghvd~GKt~lld~~r~~~-----------------~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~ 441 (884)
+.+|.+ |+++||||||||||+.+|.... .......|||..+|..+|+++...++|||+|||+
T Consensus 8 ~~kp~~ni~~~GHVD~GKSTL~g~Lt~~l~~~~g~~~~~~~~~~D~~~eEr~rGiTid~~~~~~~t~~~~~~~iD~PGH~ 87 (397)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKYGGAEAKAYDQIDNAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA 87 (397)
T ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHCCCEEEEEEEEEECCCCEEEEECCCCHH
T ss_conf 89983299999125888999999998666654385310013330257667625816998799997288149995178638
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEECCCCCCCCC--CCCHHHHHHHCCCCCCCCCCC
Q ss_conf 7899986664206805999983667402357778989970994-1561233124433--200022100001320001234
Q gi|254780787|r 442 AFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVS-IIVAINKIDKLGA--DPQKVRMSLLKHDVFVESMGG 518 (884)
Q Consensus 442 ~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p-~iva~nk~d~~~~--~~~~~~~~~~~~~~~~~~~~~ 518 (884)
.|...+..|++.+|.|||||||++|+||||.||+.+++..++| +|||+||||.... +.+.+..++...+....-.+.
T Consensus 88 ~fiknmI~Ga~~~D~alLVV~A~~G~~~QT~EHl~l~~~LGv~~~iV~vnK~D~v~~~~~~~~v~~~i~~~l~~~~f~~~ 167 (397)
T PRK00049 88 DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGD 167 (397)
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 88999873012156799999748886652899999999809982799998668888599999999999999984699844
Q ss_pred CCEEEEEEECCCCCC----------CCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCCCC
Q ss_conf 740363110024774----------1122100002333342000348666416777886377620000000000000000
Q gi|254780787|r 519 DILDVEISAKNNLNL----------DKLLDAILLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNI 588 (884)
Q Consensus 519 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 588 (884)
+.+++++|+..+.+. ..|++++... ..........|....+.+.+...|.|++.++.+..|+++.||.
T Consensus 168 ~ipiv~~S~~~~~~~~~~~~~~~~i~~Ll~~ld~~--~~~p~r~~~~p~r~~Id~vf~i~G~GtVVtGtv~sG~i~~Gd~ 245 (397)
T PRK00049 168 DTPIIRGSALKALEEIGDPEWEAKILELMEAVDSY--IPEPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEE 245 (397)
T ss_pred CCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHH--CCCCCCCCCCCEEEEECCEEEECCCCEEEEEEEEEEEECCCCE
T ss_conf 47689855003114778653178999999999864--7788888888607772338876797279998980005607998
Q ss_pred CC-CCCC---CCCCEECCCCCCCCCCCCCCCCC
Q ss_conf 02-5665---55420001466532210000122
Q gi|254780787|r 589 LV-VGDQ---WGKIRALFNDRGQGISKAVPSMP 617 (884)
Q Consensus 589 ~~-~~~~---~~~v~~~~~~~~~~~~~~~~~~~ 617 (884)
+. .+.. ..+|+.+-. .+..+..+.++.-
T Consensus 246 v~i~~~~~~~~~~VksIq~-~~~~v~~a~aG~~ 277 (397)
T PRK00049 246 VEIVGIRDTQKTTVTGVEM-FRKLLDEGQAGDN 277 (397)
T ss_pred EEEEECCCCCEEEEEEEEE-CCEEEEEECCCCE
T ss_conf 9996069884799999996-2707026358877
No 20
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=2e-37 Score=273.97 Aligned_cols=238 Identities=27% Similarity=0.298 Sum_probs=167.2
Q ss_pred CCCCCE-EEEEECCCCCHHHHHHHHHHHHH----------------HHCCCCCCEECCCEEEEECCCCEEEEEECCCHHH
Q ss_conf 255303-89862368504467778864222----------------1001231000121499951784388885166157
Q gi|254780787|r 380 DIRPPV-VTIMGHVDHGKTSLLDAIRKADV----------------AKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAA 442 (884)
Q Consensus 380 ~~R~pv-v~v~ghvd~GKt~lld~~r~~~~----------------~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~ 442 (884)
..+|.| |+++||||||||||+.+|.+..- ......|||..+|..+|+++...++|||+|||+.
T Consensus 8 ~~kp~ini~~~GHVD~GKSTL~g~Lt~~~~~~~~~~~~~~~~~D~~~eEr~rGiTid~~~~~fet~~~~~~~iD~PGHe~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHCCCEEEEEEEEEEECCCEEEEEEECCCHHH
T ss_conf 89983499999426885898999986145452464312212211665674377379856999973980599983686688
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEECCCCCCCCC--CCCHHHHHHHCCCCCCCCCCCC
Q ss_conf 899986664206805999983667402357778989970994-1561233124433--2000221000013200012347
Q gi|254780787|r 443 FYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVS-IIVAINKIDKLGA--DPQKVRMSLLKHDVFVESMGGD 519 (884)
Q Consensus 443 f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p-~iva~nk~d~~~~--~~~~~~~~~~~~~~~~~~~~~~ 519 (884)
|.+++..|++.+|+|+|||||++|+||||.||+.+++..+++ +|||+||||+... +.+.+..++...+....-.+.+
T Consensus 88 fiknMI~Ga~~aD~alLVV~A~~G~~~QTrEHl~l~~~lgv~~~iV~vnK~D~v~~~~~~e~v~~~i~~~l~~~~f~~~~ 167 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDD 167 (396)
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 77666410042567999998687875316999999998399858999987588881999999999999999855999664
Q ss_pred CEEEEEEECCCCCCCC----------CCCCHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCC
Q ss_conf 4036311002477411----------221000023333420003486664167778863776200000000000000000
Q gi|254780787|r 520 ILDVEISAKNNLNLDK----------LLDAILLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNIL 589 (884)
Q Consensus 520 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 589 (884)
.+++++|+..+.+.+. |++++... ..........|....+-+.+...|.|++.++.+..|++..||.+
T Consensus 168 ~piv~~S~~~~~~~~~~~~~~~~i~~Ll~~l~~~--~~~p~r~~~~pfrl~Id~vf~v~G~GtVVtGtV~sG~i~~Gd~v 245 (396)
T PRK12735 168 TPIIRGSALKALEGDAEWIGEAKILELMEALDSY--IPTPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGDEV 245 (396)
T ss_pred CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH--CCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEECCCCEE
T ss_conf 7799967337225887434447799999998852--67877777886599976477767971599989812156279989
Q ss_pred CC-CC---CCCCCEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 25-66---555420001466532210000122211
Q gi|254780787|r 590 VV-GD---QWGKIRALFNDRGQGISKAVPSMPIEV 620 (884)
Q Consensus 590 ~~-~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~ 620 (884)
.. +. ...+|+.+-. .+..+..+.+++-+.+
T Consensus 246 ~i~~~~~~~~~~V~sIq~-~~~~v~~a~aG~~v~l 279 (396)
T PRK12735 246 EIVGIKDTQKTTVTGVEM-FRKLLDEGQAGDNVGV 279 (396)
T ss_pred EEEECCCCCEEEEEEEEE-CCCCCCEECCCCEEEE
T ss_conf 997269984699999998-6708027148878999
No 21
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=8.5e-38 Score=276.53 Aligned_cols=228 Identities=25% Similarity=0.365 Sum_probs=166.1
Q ss_pred EEEEECCCCCHHHHHHHHHH--HHHHHCCC-CCCEECCCEEEEEC--------------------------CCCEEEEEE
Q ss_conf 89862368504467778864--22210012-31000121499951--------------------------784388885
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRK--ADVAKGEI-GGITQHIGAYQVAY--------------------------QGKNITFLD 436 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~--~~~~~~e~-ggitq~iga~~~~~--------------------------~~~~~~~iD 436 (884)
|.++||||||||||..+|.+ +.-...|. .|||+.+|..++.. ...+++|||
T Consensus 11 IgtiGHVDHGKTTLv~aLTg~~tdr~~eE~~RGiTI~LG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~is~VD 90 (410)
T PRK04000 11 IGMVGHVDHGKTTLVQALTGVWTDTHSEELKRGITIRLGYADATIYKCPNCEGPEAYTTEPTCPKCGSETELLRRVSFVD 90 (410)
T ss_pred EEEEEEECCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCEEHHCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEE
T ss_conf 99996517869999988739754238878864881210510100120545554441353023344455544331699997
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCC-CHHHHHHHHHHHHCCCC-EEEECCCCCCCCCCC-CHHHHHHHCCCCCC
Q ss_conf 1661578999866642068059999836674-02357778989970994-156123312443320-00221000013200
Q gi|254780787|r 437 TPGHAAFYEMRARGARVTDIAVLVLAADEEI-MPQAIESINHAKAADVS-IIVAINKIDKLGADP-QKVRMSLLKHDVFV 513 (884)
Q Consensus 437 tPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~-~~qt~e~~~~~~~~~~p-~iva~nk~d~~~~~~-~~~~~~~~~~~~~~ 513 (884)
+|||+.|.+++..|++..|.|||||||++|+ ||||.||+.+++..+++ +|||+||+|+..... .....++.+.. .
T Consensus 91 ~PGHe~fi~nMi~Gas~~D~alLVVaA~eG~p~pQT~EHl~i~~~lgi~~~iV~lnK~Dlv~~e~~~~~~~ei~~~l--~ 168 (410)
T PRK04000 91 APGHETLMATMLSGAALMDGAVLVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKEKALENYEQIKEFV--K 168 (410)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH--C
T ss_conf 98879999999840212667999986577876771499999999809983799996256789899999999999987--0
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC--------CHHHHHHCCHHHC
Q ss_conf 01234740363110024774112210000233334200034866641677788637762--------0000000000000
Q gi|254780787|r 514 ESMGGDILDVEISAKNNLNLDKLLDAILLQAEMLDLKTSINRKAEGIVVEGKLDRGRGP--------VVTVLVQKGTLSK 585 (884)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~g~~~~ 585 (884)
..+..+.+.+++|+.++.|++.|++.+..+... .......|....+..++-..+.|+ |.++.+..|+++.
T Consensus 169 g~~~~~~piipvSa~~g~~i~~L~~~l~~~~~~--p~r~~~~~f~m~Vdr~F~i~g~Gt~~~~~~G~VvtGtv~~G~ik~ 246 (410)
T PRK04000 169 GTVAENAPIIPVSALHGVNIDALIEAIEEEIPT--PERDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKV 246 (410)
T ss_pred CCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEC
T ss_conf 676568999996477788940899989862778--777888994489988885057986553564417888997627842
Q ss_pred CCCCCCC--CC------------CCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf 0000256--65------------554200014665322100001222
Q gi|254780787|r 586 GNILVVG--DQ------------WGKIRALFNDRGQGISKAVPSMPI 618 (884)
Q Consensus 586 ~~~~~~~--~~------------~~~v~~~~~~~~~~~~~~~~~~~~ 618 (884)
||.+... .. ..+|+.+. ..+..+..+.++.-+
T Consensus 247 GD~vei~Pg~~~~~~~~~~~~pi~t~V~si~-~~~~~~~~a~aG~~v 292 (410)
T PRK04000 247 GDEIEIRPGIKVEKGGKTKWEPITTKITSLR-AGGEKVEEARPGGLV 292 (410)
T ss_pred CCEEEEECCCCCCCCCCCCCCCCEEEEEEEE-ECCEEHHEECCCCEE
T ss_conf 9989994474334566531122126998997-478391101367658
No 22
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=5e-37 Score=271.24 Aligned_cols=234 Identities=25% Similarity=0.354 Sum_probs=170.3
Q ss_pred CCCE-EEEEECCCCCHHHHHHHHHHH-------------------------------HHHHCCCCCCEECCCEEEEECCC
Q ss_conf 5303-898623685044677788642-------------------------------22100123100012149995178
Q gi|254780787|r 382 RPPV-VTIMGHVDHGKTSLLDAIRKA-------------------------------DVAKGEIGGITQHIGAYQVAYQG 429 (884)
Q Consensus 382 R~pv-v~v~ghvd~GKt~lld~~r~~-------------------------------~~~~~e~ggitq~iga~~~~~~~ 429 (884)
+|.+ |.++||||||||||+..|... +..+....|||+.+|..+|.++.
T Consensus 5 K~~l~i~~~GhVD~GKSTL~G~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~a~~~D~~~eEr~rGiTid~~~~~f~~~~ 84 (426)
T PRK12317 5 KPHLNLAVIGHVDHGKSTLVGRLLYETGAVDEHIIEEYEEEAKKKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 84 (426)
T ss_pred CCEEEEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHCCCEEEEEEEEEECCC
T ss_conf 97849999952287688887689877299448999999989986487752143212578668755827883169995498
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCC--CCCHHHHHHHHHHHHCCCC-EEEECCCCCCCCCCCCHHHHHH
Q ss_conf 438888516615789998666420680599998366--7402357778989970994-1561233124433200022100
Q gi|254780787|r 430 KNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADE--EIMPQAIESINHAKAADVS-IIVAINKIDKLGADPQKVRMSL 506 (884)
Q Consensus 430 ~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~--g~~~qt~e~~~~~~~~~~p-~iva~nk~d~~~~~~~~~~~~~ 506 (884)
..++|||+|||+.|...+..|++.+|+|||||||++ |+++||.||+.+++..++| +|||+||||+.....++...-.
T Consensus 85 ~~~~iiD~PGH~~fi~nmi~Gas~~D~ailvV~A~~~~G~~~QT~eHl~l~~~lgi~~iiV~vnKmD~v~~~~~~~~~i~ 164 (426)
T PRK12317 85 YYFTIIDCPGHRDFVKNMITGASQADAAVLVVSARDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYNEVK 164 (426)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHH
T ss_conf 16999878963667877874534677279999636566764778999999998099839999953335677889999999
Q ss_pred HCCCCCCCCC---CCCCEEEEEEECCCCCCCCC------------CCCHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCC
Q ss_conf 0013200012---34740363110024774112------------21000023333420003486664167778863776
Q gi|254780787|r 507 LKHDVFVESM---GGDILDVEISAKNNLNLDKL------------LDAILLQAEMLDLKTSINRKAEGIVVEGKLDRGRG 571 (884)
Q Consensus 507 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (884)
.+...+.... ..+..++|+|+..|+|+... ++.+.. ..........|....+-+.+...|.|
T Consensus 165 ~~~~~~l~~~g~~~~~i~~iPiSa~~Gdni~~~s~~~~Wy~G~tLl~~L~~---~~~~~~~~~~p~r~~I~~v~~~~g~G 241 (426)
T PRK12317 165 EEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSDNTPWYNGPTLLEALDA---LKPPEKPTDKPLRIPIQDVYSITGVG 241 (426)
T ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHC---CCCCCCCCCCCEEEEEEEEEEECCCE
T ss_conf 999999997098803470887532346564116766863220789999863---77776655785355787788406870
Q ss_pred CCHHHHHHCCHHHCCCCCCCCC--CCCCCEECCCCCCCCCCCCCCCCCCC
Q ss_conf 2000000000000000002566--55542000146653221000012221
Q gi|254780787|r 572 PVVTVLVQKGTLSKGNILVVGD--QWGKIRALFNDRGQGISKAVPSMPIE 619 (884)
Q Consensus 572 ~~~~~~~~~g~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~ 619 (884)
++.++.+..|.++.||.++... ...+|+.+.. .+..+..+.++.-+.
T Consensus 242 tvv~G~v~sG~i~~Gd~v~i~Ps~~~~~VksI~~-~~~~v~~a~aG~~v~ 290 (426)
T PRK12317 242 TVPVGRVETGVLKVGDKVVFMPAGKVGEVKSIEM-HHEELPQAEPGDNIG 290 (426)
T ss_pred EEEEEEECCCCCCCCCEEEEECCCCCEEEEEEEE-CCCEEEEEECCCEEE
T ss_conf 7998684438543799999967998658976886-694788995898699
No 23
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=100.00 E-value=2.2e-37 Score=273.73 Aligned_cols=158 Identities=35% Similarity=0.458 Sum_probs=132.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCC----------------CCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHH
Q ss_conf 8986236850446777886422210012----------------310001214999517843888851661578999866
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEI----------------GGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRAR 449 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~----------------ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~r 449 (884)
|||+||||||||||+++|...+.+..+. .|||+.++...+.+.+..++|||||||+.|...+.+
T Consensus 2 v~iiGh~d~GKTTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~ 81 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVIR 81 (189)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHCCCEEEEEEEEEEECCEEEEEEECCCCHHHHHHHHH
T ss_conf 89991799899999999997647235686258885057778886384132227999989989999969981889999999
Q ss_pred HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCC-CCCCHHHHHHHCCCC---------CCCCCCCC
Q ss_conf 64206805999983667402357778989970994156123312443-320002210000132---------00012347
Q gi|254780787|r 450 GARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLG-ADPQKVRMSLLKHDV---------FVESMGGD 519 (884)
Q Consensus 450 g~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~-~~~~~~~~~~~~~~~---------~~~~~~~~ 519 (884)
|++.+|+|||||||.+|+++||.++|.+++..++|+||++||||++. .+.+....++.+... ....++..
T Consensus 82 ~l~~aD~ailvVda~~G~~~qt~~~~~~~~~~~~p~iv~iNKiD~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~~~~ 161 (189)
T cd00881 82 GLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLL 161 (189)
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCC
T ss_conf 98646856999987989987899999999976998799998971877562999999999998753210232110125887
Q ss_pred CEEEEEEECCCCCCCCCCCCHHCC
Q ss_conf 403631100247741122100002
Q gi|254780787|r 520 ILDVEISAKNNLNLDKLLDAILLQ 543 (884)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~ 543 (884)
.+.+++||++|.|+++||+++.-+
T Consensus 162 ~piv~iSA~~G~gv~~Lld~i~~~ 185 (189)
T cd00881 162 VPIVPGSALTGIGVEELLEAIVEH 185 (189)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 759998886786979999999976
No 24
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=2e-37 Score=274.02 Aligned_cols=236 Identities=28% Similarity=0.327 Sum_probs=166.5
Q ss_pred CCCCCE-EEEEECCCCCHHHHHHHHHHHH---------------HH-HCCCCCCEECCCEEEEECCCCEEEEEECCCHHH
Q ss_conf 255303-8986236850446777886422---------------21-001231000121499951784388885166157
Q gi|254780787|r 380 DIRPPV-VTIMGHVDHGKTSLLDAIRKAD---------------VA-KGEIGGITQHIGAYQVAYQGKNITFLDTPGHAA 442 (884)
Q Consensus 380 ~~R~pv-v~v~ghvd~GKt~lld~~r~~~---------------~~-~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~ 442 (884)
+.+|.| ++|+||||||||||+..|.+.. -. ..-..|||..+|..+|+++...++|||+|||+.
T Consensus 8 ~~k~~~ni~~~GHVD~GKSTL~g~L~~~~~~~~~~~~~~~~~~D~~~eEr~rGiTid~~~~~~~t~~~~~~~iD~PGH~~ 87 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLAQAKDYASIDAAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (394)
T ss_pred CCCCEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHCCCCEEEEEEEEEECCCEEEEEEECCCCHH
T ss_conf 89987499999512884898998975045450651022223311665562478217841899972883699988897254
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEECCCCCCCCCC--CCHHHHHHHCCCCCCCCCCCC
Q ss_conf 899986664206805999983667402357778989970994-15612331244332--000221000013200012347
Q gi|254780787|r 443 FYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVS-IIVAINKIDKLGAD--PQKVRMSLLKHDVFVESMGGD 519 (884)
Q Consensus 443 f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p-~iva~nk~d~~~~~--~~~~~~~~~~~~~~~~~~~~~ 519 (884)
|...+..|++.+|.|+|||||++|++|||.||+.+++..++| +|||+||||+.... .+.+..++...+....-.+.+
T Consensus 88 fi~nmi~Ga~~~D~alLVV~A~~G~~~QT~EHl~l~~~lgv~~~IV~vnK~D~v~~~~~~~~v~~~i~~~l~~~g~~~~~ 167 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDD 167 (394)
T ss_pred HHCCEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 31104443534665899998587746779999999998299915999988789983999999999999999876999120
Q ss_pred CEEEEEEECCCCCCC--------CCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCCCC
Q ss_conf 403631100247741--------122100002333342000348666416777886377620000000000000000025
Q gi|254780787|r 520 ILDVEISAKNNLNLD--------KLLDAILLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILVV 591 (884)
Q Consensus 520 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 591 (884)
.+++++|++.+.+.. .|++++..+ ..........|....+.+.+...|.|++.++.+..|.++.||.+..
T Consensus 168 ip~i~~s~~~~~~~~~~~~~~i~~Ll~~ld~~--~~~p~r~~~~p~r~~Id~vf~v~G~GtVvtG~V~sG~i~~Gd~v~i 245 (394)
T PRK12736 168 IPVIRGSALKALEGDPKWEDAIMELMDAVDEY--IPTPERDTDKPFLMPVEDVFSITGRGTVVTGRVERGTVKVGDEVEI 245 (394)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHH--CCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEEEECEEECCCEEEE
T ss_conf 60998454361368873577899999999852--7788887777628871117860897589999980146865998999
Q ss_pred -CCC---CCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf -665---554200014665322100001222
Q gi|254780787|r 592 -GDQ---WGKIRALFNDRGQGISKAVPSMPI 618 (884)
Q Consensus 592 -~~~---~~~v~~~~~~~~~~~~~~~~~~~~ 618 (884)
+.. ..+|+.+-. ++..+..+.+++-+
T Consensus 246 ~~~~~~~~~~VrsI~~-~~~~v~~a~aG~~v 275 (394)
T PRK12736 246 VGIKETQKTTVTGVEM-FRKLLDEGQAGDNV 275 (394)
T ss_pred EECCCCCEEEEEEEEE-CCCCCCCCCCCCEE
T ss_conf 7079980799998736-78372480476789
No 25
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=100.00 E-value=2.9e-37 Score=272.86 Aligned_cols=155 Identities=28% Similarity=0.390 Sum_probs=121.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHH--HC-CCCCCEECCCEEEEE-------------------------C--------CC
Q ss_conf 898623685044677788642221--00-123100012149995-------------------------1--------78
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVA--KG-EIGGITQHIGAYQVA-------------------------Y--------QG 429 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~--~~-e~ggitq~iga~~~~-------------------------~--------~~ 429 (884)
|||+||||||||||+++|..+... .. ...|||+++|+.... . ..
T Consensus 3 i~iiGHVDhGKSTLi~~L~g~~~~~~~~e~er~it~klg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (203)
T cd01888 3 IGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKLV 82 (203)
T ss_pred EEEEEEECCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCEEEECCCCCCCCCE
T ss_conf 99998857879999999708512440788867760311145666651112122310111101244214531456543112
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCC-CHHHHHHHHHHHHCCCC-EEEECCCCCCCCCCC-CHHHHHH
Q ss_conf 43888851661578999866642068059999836674-02357778989970994-156123312443320-0022100
Q gi|254780787|r 430 KNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEI-MPQAIESINHAKAADVS-IIVAINKIDKLGADP-QKVRMSL 506 (884)
Q Consensus 430 ~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~-~~qt~e~~~~~~~~~~p-~iva~nk~d~~~~~~-~~~~~~~ 506 (884)
+.++|||||||++|+.+|.+|++.||+|||||||++|+ +|||+||+.+++..+++ +|||+||||....+. .....++
T Consensus 83 r~~tiiD~PGH~df~~nmi~Gas~aD~aiLvVdA~eG~~~~QT~eH~~l~~~lgv~~iIV~vNKmDlv~~~~~~~~~~ei 162 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYEQI 162 (203)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 47999868987999999997664347668986436677507799999999984998636775077778867899999999
Q ss_pred HCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHC
Q ss_conf 001320001234740363110024774112210000
Q gi|254780787|r 507 LKHDVFVESMGGDILDVEISAKNNLNLDKLLDAILL 542 (884)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (884)
.... ......+..++|+||++|.|+++|++.+.-
T Consensus 163 ~~~l--~~~~~~~~~iIPiSA~~G~NI~~ll~~i~~ 196 (203)
T cd01888 163 KKFV--KGTIAENAPIIPISAQLKYNIDVLLEYIVK 196 (203)
T ss_pred HHHH--CCCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9985--521689985999147889799999999986
No 26
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=1.3e-36 Score=268.32 Aligned_cols=150 Identities=31% Similarity=0.367 Sum_probs=120.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHH----------------HCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHH
Q ss_conf 898623685044677788642221----------------0012310001214999517843888851661578999866
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVA----------------KGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRAR 449 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~----------------~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~r 449 (884)
|+|+||||||||||+|+|....-. .....|||++.+...+.+++..++|||||||++|...+.|
T Consensus 5 i~iiGHVDhGKTTL~~~l~~~~~~~~~~~~~~~~~~D~~~~EreRGiTI~~~~~~~~~~~~~~~~IDtPGH~dF~~~~i~ 84 (195)
T cd01884 5 VGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNMIT 84 (195)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHCCCCCCCCEEEEEECCCEEEEECCCCCHHHHHHHHHH
T ss_conf 99996058869899999999886634444112001005466650588614418999608816996268960778889986
Q ss_pred HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEECCCCCCCCCC--CCHHHHHHHCCCCCCCCCCCCCEEEEEE
Q ss_conf 64206805999983667402357778989970994-15612331244332--0002210000132000123474036311
Q gi|254780787|r 450 GARVTDIAVLVLAADEEIMPQAIESINHAKAADVS-IIVAINKIDKLGAD--PQKVRMSLLKHDVFVESMGGDILDVEIS 526 (884)
Q Consensus 450 g~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p-~iva~nk~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (884)
|++++|.|||||||.+|+||||+|++.+++..++| +|||+||||+.... .+.+..++.+......-...+.+++++|
T Consensus 85 g~~~~D~aiLVVdA~eGv~~QT~eh~~la~~lgi~~iiV~iNK~D~~~~~~~~~~v~~ei~~~l~~~g~~~~~~p~ip~S 164 (195)
T cd01884 85 GAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGS 164 (195)
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 35113626899852778747899999999980999627999687789878999999999999998429995568299977
Q ss_pred ECCCCCCCC
Q ss_conf 002477411
Q gi|254780787|r 527 AKNNLNLDK 535 (884)
Q Consensus 527 ~~~~~~~~~ 535 (884)
|+.|.+..+
T Consensus 165 a~~g~~~~~ 173 (195)
T cd01884 165 ALKALEGDD 173 (195)
T ss_pred HHHHHCCCC
T ss_conf 387535788
No 27
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=100.00 E-value=1.4e-36 Score=268.09 Aligned_cols=152 Identities=28% Similarity=0.422 Sum_probs=127.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCC---------------CCCCEECCCEEEEECCC-----CEEEEEECCCHHHHHH
Q ss_conf 898623685044677788642221001---------------23100012149995178-----4388885166157899
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGE---------------IGGITQHIGAYQVAYQG-----KNITFLDTPGHAAFYE 445 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e---------------~ggitq~iga~~~~~~~-----~~~~~iDtPGh~~f~~ 445 (884)
|||+||||||||||+|+|....-.-.+ ..|||++.+...+.+.. +.++|||||||++|..
T Consensus 3 iaiiGHvd~GKTTL~~~ll~~tg~i~~~~~~~~~~D~~~~E~eRgiTi~~~~~~~~~~~~~~~~~~in~iDtPGh~dF~~ 82 (179)
T cd01890 3 FSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFSY 82 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEEECCCCCCEEEEEEECCCCCCCHH
T ss_conf 99994899898999999999859954145732441651767863866874336888413678714899998998645177
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEE
Q ss_conf 98666420680599998366740235777898997099415612331244332000221000013200012347403631
Q gi|254780787|r 446 MRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEI 525 (884)
Q Consensus 446 ~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (884)
++.||+++||.|||||||.+|+++||+++|.++...++|+|+++||||+..++.+++..++.+..-+ .....+++
T Consensus 83 ~~~~al~~~D~allVVda~~Gv~~qT~~~~~~a~~~~~p~ivviNKiD~~~ad~~~v~~~i~~~~g~-----~~~~~v~v 157 (179)
T cd01890 83 EVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVLGL-----DPSEAILV 157 (179)
T ss_pred HHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCC-----CCCCEEEE
T ss_conf 8988997544278998647787374899999998769988999865556778999999999998688-----97674884
Q ss_pred EECCCCCCCCCCCCHHC
Q ss_conf 10024774112210000
Q gi|254780787|r 526 SAKNNLNLDKLLDAILL 542 (884)
Q Consensus 526 ~~~~~~~~~~~~~~~~~ 542 (884)
||.+|.|++.||+++.-
T Consensus 158 SA~~g~gv~~Ll~~i~~ 174 (179)
T cd01890 158 SAKTGLGVEDLLEAIVE 174 (179)
T ss_pred ECCCCCCHHHHHHHHHH
T ss_conf 37889798999999996
No 28
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=3.8e-36 Score=265.23 Aligned_cols=237 Identities=27% Similarity=0.309 Sum_probs=164.8
Q ss_pred CCCCCE-EEEEECCCCCHHHHHHHHHHHHH----------------HHCCCCCCEECCCEEEEECCCCEEEEEECCCHHH
Q ss_conf 255303-89862368504467778864222----------------1001231000121499951784388885166157
Q gi|254780787|r 380 DIRPPV-VTIMGHVDHGKTSLLDAIRKADV----------------AKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAA 442 (884)
Q Consensus 380 ~~R~pv-v~v~ghvd~GKt~lld~~r~~~~----------------~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~ 442 (884)
+.||.| |.++||||||||||+..|....- ...-..|||..++..+++++...++|||+|||+.
T Consensus 8 ~~k~~vni~~~GHVD~GKSTL~g~L~~~~~~~~~~~~~~~~~~D~~~eEr~rGiTid~~~~~~et~~~~~~~iD~PGH~~ 87 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAANGGAKGKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHCCCEEEECEEEEECCCEEEEEEECCCHHH
T ss_conf 89986999999545883999999986453004513343155323797687369448802489962875999986796789
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEECCCCCCCCCCCCH---HHHHHHCCCCCCCCCCC
Q ss_conf 899986664206805999983667402357778989970994-15612331244332000---22100001320001234
Q gi|254780787|r 443 FYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVS-IIVAINKIDKLGADPQK---VRMSLLKHDVFVESMGG 518 (884)
Q Consensus 443 f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p-~iva~nk~d~~~~~~~~---~~~~~~~~~~~~~~~~~ 518 (884)
|...+..|++.+|.|+|||||++|+++||.||+.+++..++| +|||+||||... +... +..++...+....-...
T Consensus 88 fv~nmi~Gas~aD~alLVV~A~~G~~~QTkEHl~l~~~lgV~~~IVavnKmD~v~-~~~~~e~i~~~i~~~l~~~g~~~~ 166 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVD-DEELLELVELEVRELLDKYDFPGD 166 (409)
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCC-HHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999875230158128999868788500499999999739993655555679854-899999999999999997399845
Q ss_pred CCEEEEEEECCCCCCCCC-----------CCCH-HCCCCCCC----CCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCH
Q ss_conf 740363110024774112-----------2100-00233334----2000348666416777886377620000000000
Q gi|254780787|r 519 DILDVEISAKNNLNLDKL-----------LDAI-LLQAEMLD----LKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGT 582 (884)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~-----------~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 582 (884)
..+++++|+..+.+.-.. ++.. .+...+.. .......|....+.+.+...|.|++.++.+..|.
T Consensus 167 ~i~~vp~sa~~~~~~~~~~~~~~~~~~~w~~~~~~Ll~~l~~~~p~~~r~~~~p~r~~Id~vf~v~G~GtVv~G~v~sG~ 246 (409)
T CHL00071 167 EIPIVAGSALLALEALIENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFSITGRGTVATGRIERGT 246 (409)
T ss_pred CCEEEECCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCEEECCCCEEEEEEEEEECC
T ss_conf 56089652133234312587545565612447999999887237788887677606442214753897889999991456
Q ss_pred HHCCCCC-CCCCC---CCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf 0000000-25665---554200014665322100001222
Q gi|254780787|r 583 LSKGNIL-VVGDQ---WGKIRALFNDRGQGISKAVPSMPI 618 (884)
Q Consensus 583 ~~~~~~~-~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~ 618 (884)
++.||.+ +++.. ..+|+.+-. .+..+..+.+++-+
T Consensus 247 v~~Gd~v~i~~~~~~~~~~VksI~~-~~~~~~~a~aG~~v 285 (409)
T CHL00071 247 VKVGDTVEIVGLRETRTTTVTGLEM-FQKTLDEGLAGDNV 285 (409)
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEE-CCCCCCEECCCCEE
T ss_conf 3499989999769986079999998-89598888799889
No 29
>PTZ00141 elongation factor 1 alpha; Provisional
Probab=100.00 E-value=1.4e-35 Score=261.30 Aligned_cols=235 Identities=21% Similarity=0.233 Sum_probs=171.7
Q ss_pred CCCE-EEEEECCCCCHHHHHHHHHHHH-------------------------------HHHCCCCCCEECCCEEEEECCC
Q ss_conf 5303-8986236850446777886422-------------------------------2100123100012149995178
Q gi|254780787|r 382 RPPV-VTIMGHVDHGKTSLLDAIRKAD-------------------------------VAKGEIGGITQHIGAYQVAYQG 429 (884)
Q Consensus 382 R~pv-v~v~ghvd~GKt~lld~~r~~~-------------------------------~~~~e~ggitq~iga~~~~~~~ 429 (884)
|+.+ |.++||||||||||+-.|.... ..+.-..|||+.++..+|.++.
T Consensus 5 k~~l~i~~~GhVD~GKSTL~G~Ll~~~g~v~~~~~~~~~~~~~~~g~~~~~~a~~~D~~~~Er~rGiTidv~~~~f~t~~ 84 (443)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKLGGIDKRTIEKFEKESAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (443)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHCCCHHHHHCCCEEEEEEEEEECCC
T ss_conf 87659999947798288889999987388468899999888887178720004453077667636710734799994398
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCH-------HHHHHHHHHHHCCCC-EEEECCCCCCCCCCCCH
Q ss_conf 4388885166157899986664206805999983667402-------357778989970994-15612331244332000
Q gi|254780787|r 430 KNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMP-------QAIESINHAKAADVS-IIVAINKIDKLGADPQK 501 (884)
Q Consensus 430 ~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~~~-------qt~e~~~~~~~~~~p-~iva~nk~d~~~~~~~~ 501 (884)
..++|||+|||+.|...+..|++.+|+|||||||++|+++ ||.||+.+++..+++ +|||+||||......++
T Consensus 85 ~~~~iiD~PGH~~fi~nmi~Gas~aD~ailvVdA~~G~~e~gf~~~gQTreH~~i~~~lgv~~iIVaVNKmD~v~~~e~~ 164 (443)
T PTZ00141 85 YYYTVIDAPGHRDFIKNMITGTSQADVALLVVPAEVGGFEGAFSKEGQTREHALLAFTLGVKQIIVGINKMDTCDYKEDR 164 (443)
T ss_pred EEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCHHHH
T ss_conf 89999989972888999996341077589999867785213466678639999999973997599999962156660999
Q ss_pred HHHHHHCCCCCCCCC---CCCCEEEEEEECCCCCCCCC------------CCCHHCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 221000013200012---34740363110024774112------------210000233334200034866641677788
Q gi|254780787|r 502 VRMSLLKHDVFVESM---GGDILDVEISAKNNLNLDKL------------LDAILLQAEMLDLKTSINRKAEGIVVEGKL 566 (884)
Q Consensus 502 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (884)
...-..+...+.... ...+.++|+|+..|+|+... ++.+.. ..........|....+-+.+.
T Consensus 165 f~~i~~~~~~~l~~~g~~~~~i~~iPiSa~~Gdni~~~s~~~~Wy~G~tLle~Ld~---~~~~~~~~~~p~r~pI~~v~~ 241 (443)
T PTZ00141 165 YEEIQKEVCGYLKKVGYNAEKVPFVPISGFEGDNMIEKSDKMPWYKGKTLVEALDT---MEPPKRPVDKPLRLPLQGVYK 241 (443)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEHHHHHHHHHHC---CCCCCCCCCCCCCCCEEEEEE
T ss_conf 99999999999997399956661896341246653246655644235689999856---898756555665340503886
Q ss_pred ECCCCCCHHHHHHCCHHHCCCCCCCCCC--CCCCEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 6377620000000000000000025665--55420001466532210000122211
Q gi|254780787|r 567 DRGRGPVVTVLVQKGTLSKGNILVVGDQ--WGKIRALFNDRGQGISKAVPSMPIEV 620 (884)
Q Consensus 567 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~ 620 (884)
..+.|++.++.+..|.+..||.+..... ..+|+.+... +..+..|.+++.+.+
T Consensus 242 ~~g~gtvv~G~V~sG~i~~Gd~v~i~Ps~~~~~VksI~~~-~~~v~~A~aG~~V~i 296 (443)
T PTZ00141 242 IGGIGTVPVGRVETGILKAGMVLTFAPSAVTTECKSVEMH-HEVVEEARPGDNVGF 296 (443)
T ss_pred ECCCCEEEEEEEEEEEEECCCEEEECCCCCEEEEEEEEEC-CCEECEECCCCEEEE
T ss_conf 1687327876761569956978998779988999899989-969087869983799
No 30
>PTZ00336 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=9.1e-36 Score=262.63 Aligned_cols=231 Identities=19% Similarity=0.264 Sum_probs=170.3
Q ss_pred EEEEECCCCCHHHHHHHHHHH------------------------------H-HHHCCCCCCEECCCEEEEECCCCEEEE
Q ss_conf 898623685044677788642------------------------------2-210012310001214999517843888
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKA------------------------------D-VAKGEIGGITQHIGAYQVAYQGKNITF 434 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~------------------------------~-~~~~e~ggitq~iga~~~~~~~~~~~~ 434 (884)
|.++||||||||||+-.|... + ..+.-..|||+.+|..+|.++..+++|
T Consensus 10 i~~~GhVD~GKSTL~G~Ll~~~~~v~~~~l~~~~~~~~~~g~~s~~~a~~~D~~~~Er~rGiTid~~~~~f~t~~~~~~i 89 (449)
T PTZ00336 10 LVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVLDKLKAERERGITIDIALWKFESPKSVFTI 89 (449)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHCCCEEEEEEEEEEECCCEEEEE
T ss_conf 99992778968888999998748847899999999998718751432545127722322875898679999749848999
Q ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCH-------HHHHHHHHHHHCCCC-EEEECCCCCCCC-CCCCHHHHH
Q ss_conf 85166157899986664206805999983667402-------357778989970994-156123312443-320002210
Q gi|254780787|r 435 LDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMP-------QAIESINHAKAADVS-IIVAINKIDKLG-ADPQKVRMS 505 (884)
Q Consensus 435 iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~~~-------qt~e~~~~~~~~~~p-~iva~nk~d~~~-~~~~~~~~~ 505 (884)
||+|||+.|...+..|++.+|+|||||||.+|.+| ||.||+.+++..+++ +|||+||||... .|......+
T Consensus 90 iD~PGH~~fi~nmi~Gas~aD~aiLVVdA~~G~~e~g~~~~gQTreHl~i~~~Lgv~~iiV~vNKmD~~~v~~~~~r~~~ 169 (449)
T PTZ00336 90 IDAPGHRDFIKNMITGTSQADAAILMIDSTHGGFEAGISKDGQTREHALLAFTLGVKQMVVCCNKMDDKTVTYAQSRYDE 169 (449)
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHH
T ss_conf 86894688899999765006767999987877410355667753999999986699779999862015662113789999
Q ss_pred HH-CCCCCCCCCC---CCCEEEEEEECCCCCCCCC------------CCCHHCCCCCCCCCCCCCCCCCCEEEEEEEECC
Q ss_conf 00-0132000123---4740363110024774112------------210000233334200034866641677788637
Q gi|254780787|r 506 LL-KHDVFVESMG---GDILDVEISAKNNLNLDKL------------LDAILLQAEMLDLKTSINRKAEGIVVEGKLDRG 569 (884)
Q Consensus 506 ~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (884)
+. +...+....| ..+.++|+|+..|.|+-.. ++.+.. ..........|....+-+.+...+
T Consensus 170 i~~e~~~~l~~~g~~~~~v~~IPiSa~~Gdni~~~s~~~~Wy~GptLl~~Ld~---~~~~~r~~~~p~r~pV~~vf~~~g 246 (449)
T PTZ00336 170 ISKEVGAYLKRVGYNPEKVRFIPISGWQGDNMIEKSDNMPWYKGPTLLDALDM---LEPPVRPVDKPLRLPLQDVYKIGG 246 (449)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHC---CCCCCCCCCCCCCCCCCEEEECCC
T ss_conf 99999999987499900054354201047775326555754105248999754---489877566764234010773278
Q ss_pred CCCCHHHHHHCCHHHCCCCCCCCC--CCCCCEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 762000000000000000002566--555420001466532210000122211
Q gi|254780787|r 570 RGPVVTVLVQKGTLSKGNILVVGD--QWGKIRALFNDRGQGISKAVPSMPIEV 620 (884)
Q Consensus 570 ~~~~~~~~~~~g~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~ 620 (884)
.|++.++.+..|+++.||.+.... ...+|+.+... +..+..+.++..+.+
T Consensus 247 ~gtvv~G~V~sG~v~~Gd~V~i~Ps~~~~~VksI~~~-~~~v~~A~aG~~V~i 298 (449)
T PTZ00336 247 IGTVPVGRVETGIMKPGDVVTFAPANVTTEVKSIEMH-HEQLAEAQPGDNVGF 298 (449)
T ss_pred CCEEEEEEEECCCCCCCCEEEECCCCCEEEEEEEEEC-CCEECEECCCCEEEE
T ss_conf 8318889994363058999999179987999899989-938596779984789
No 31
>KOG0462 consensus
Probab=100.00 E-value=1.9e-36 Score=267.28 Aligned_cols=202 Identities=28% Similarity=0.400 Sum_probs=175.5
Q ss_pred EEEEEECCCCCHHHHHHHHHH-HHHHHC--------------CCCCCEECCCEEEEECCC---CEEEEEECCCHHHHHHH
Q ss_conf 389862368504467778864-222100--------------123100012149995178---43888851661578999
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRK-ADVAKG--------------EIGGITQHIGAYQVAYQG---KNITFLDTPGHAAFYEM 446 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~-~~~~~~--------------e~ggitq~iga~~~~~~~---~~~~~iDtPGh~~f~~~ 446 (884)
-+.|+.|||||||||.|+|.. |.+.+. .-.|||..--.+.+.+.. ..+++||||||.+|+..
T Consensus 62 NfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E 141 (650)
T KOG0462 62 NFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE 141 (650)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEEECCCCCCCCCCE
T ss_conf 13799984277016899999982877888755664245445665284787512379997587328875058985555410
Q ss_pred HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEE
Q ss_conf 86664206805999983667402357778989970994156123312443320002210000132000123474036311
Q gi|254780787|r 447 RARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEIS 526 (884)
Q Consensus 447 r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (884)
.+|..+.||.|||||||.+|+++||+-.+.+|.+++.-+|.+|||||++.++++++.+++.+....... ..+.+|
T Consensus 142 VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~-----~~i~vS 216 (650)
T KOG0462 142 VSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPA-----EVIYVS 216 (650)
T ss_pred EHEHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCC-----CEEEEE
T ss_conf 001265357159999767681288999999999859748886531578988989999999998668961-----248887
Q ss_pred ECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCCCCCC
Q ss_conf 0024774112210000233334200034866641677788637762000000000000000002566
Q gi|254780787|r 527 AKNNLNLDKLLDAILLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILVVGD 593 (884)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 593 (884)
|++|.+++.+|++|. ......+.....|..+.+++++.|..+|.++++.+..|.++.||-+.+..
T Consensus 217 AK~G~~v~~lL~AII--~rVPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~ 281 (650)
T KOG0462 217 AKTGLNVEELLEAII--RRVPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQSAA 281 (650)
T ss_pred ECCCCCHHHHHHHHH--HHCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEECCCEEEEEE
T ss_conf 025756888999999--63799988888516777666335442535899998634462187888861
No 32
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=3.6e-35 Score=258.56 Aligned_cols=242 Identities=26% Similarity=0.320 Sum_probs=179.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHH-H-------HHC----------CCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHH
Q ss_conf 38986236850446777886422-2-------100----------12310001214999517843888851661578999
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKAD-V-------AKG----------EIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEM 446 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~-~-------~~~----------e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~ 446 (884)
-|||+||||||||||.|+|...+ . -+| -..|||.+-.+..+.|++..++|||||||.+|+..
T Consensus 10 Ni~IiaHvd~GKTTL~d~Ll~~~g~i~~~g~v~~g~t~~D~~~~E~eRgITikss~~sl~~~~~~iNlIDTPGHvDF~~E 89 (687)
T PRK13351 10 NIGIMAHIDAGKTTLTERILFYTGKIHKMGSVEDGNTVSDWMPQEQERGISIESAAATCDWKNHRINLIDTPGHIDFTGE 89 (687)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCCCCHHHH
T ss_conf 89999179989899999999974998758715478744788299997498776215999889989999809797430999
Q ss_pred HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCC--------------
Q ss_conf 866642068059999836674023577789899709941561233124433200022100001320--------------
Q gi|254780787|r 447 RARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVF-------------- 512 (884)
Q Consensus 447 r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~-------------- 512 (884)
..+++.+||.||||||+.+|+++||.-.|+++.+.++|.|++||||||...+......++.+....
T Consensus 90 v~~aLr~~DgallVVDaveGv~~qT~~v~r~a~~~~lp~il~iNK~DR~~~d~~~~l~~i~~~l~~~~~~~~~p~~~~~~ 169 (687)
T PRK13351 90 VERSLRVLDGAVVVIDAVTGVQPQTETVWEQADKYKIPRLIFINKMDRVGADLFDVLEDIEEKFGKRPLPLQLPIGSGDS 169 (687)
T ss_pred HHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 99999987868999978999868899999999987998599997977899876677889999848964778600135655
Q ss_pred ---------CC--C---------------------------------------------CC-------------------
Q ss_conf ---------00--1---------------------------------------------23-------------------
Q gi|254780787|r 513 ---------VE--S---------------------------------------------MG------------------- 517 (884)
Q Consensus 513 ---------~~--~---------------------------------------------~~------------------- 517 (884)
.. . +.
T Consensus 170 ~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~~~~l~~~l~~~~~~ 249 (687)
T PRK13351 170 FEGVVDLITEKELHFKEGDGGDTVEERPIPEELLEEVASAREKLIDALLEFDDELLELYLEGEEITAEQLRAPFRRGLRS 249 (687)
T ss_pred CCCEEEECCCHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 56416631101220024556850577256288899999999999999983089999998748878899999999999984
Q ss_pred -CCCEEEEEEECCCCCCCCCCCCHHCCCC----------------CCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHC
Q ss_conf -4740363110024774112210000233----------------33420003486664167778863776200000000
Q gi|254780787|r 518 -GDILDVEISAKNNLNLDKLLDAILLQAE----------------MLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQK 580 (884)
Q Consensus 518 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (884)
.-.+.+..|+.++.|+..||+++..+.- ......++..|..+++.-...+...|.++.+.|+.
T Consensus 250 ~~~~Pv~~gsa~~~~Gv~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~p~~a~V~K~~~~~~~g~~s~~RV~s 329 (687)
T PRK13351 250 GHLVPVLFGSALKNIGIRPLLDAVVEYLPSPLEGNPPAGSKGTEKKVLVNPDPEKPLLALVFKVQYDPYAGKLTYLRVYQ 329 (687)
T ss_pred CCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEC
T ss_conf 87241230303358785889999987089921034545656666400145799987089999978748897589999853
Q ss_pred CHHHCCCCCCCCCCCC--CCEECCCC---CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0000000002566555--42000146---6532210000122211112347
Q gi|254780787|r 581 GTLSKGNILVVGDQWG--KIRALFND---RGQGISKAVPSMPIEVLGLQGM 626 (884)
Q Consensus 581 g~~~~~~~~~~~~~~~--~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 626 (884)
|+|+.|+.+....... ++..++.. ....+..+.++.++.+.|+...
T Consensus 330 GtL~~g~~v~~~~~~~~e~i~~l~~~~g~~~~~v~~~~aG~Iv~i~gl~~~ 380 (687)
T PRK13351 330 GTLRSGSQLYNGSGRKREKVGRIFRLQGNKREEVDEAKAGDIVAVAGLKEL 380 (687)
T ss_pred CEECCCCEEEECCCCCEEEECCEEEECCCCCCCCCEECCCCEEEEECCCCC
T ss_conf 454579877634898359967614642677541488677988999587647
No 33
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=1.5e-34 Score=254.31 Aligned_cols=242 Identities=26% Similarity=0.256 Sum_probs=175.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHH--------HHHC----------CCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHH
Q ss_conf 38986236850446777886422--------2100----------12310001214999517843888851661578999
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKAD--------VAKG----------EIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEM 446 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~--------~~~~----------e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~ 446 (884)
-|||+||||||||||.|+|...+ |..| -..|||.+-.+..+.|.+..|+|||||||-+|+..
T Consensus 12 Ni~IvaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~s~~~~~~~iNLIDTPGHvDF~~E 91 (693)
T PRK12739 12 NIGIMAHIDAGKTTTTERILFYTGKIHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWKDHRINIIDTPGHVDFTIE 91 (693)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHCCCCEEECEEEEEECCEEEEEEECCCCCHHHHH
T ss_conf 99999079989899999999976985657334389756878099987598674552778459989999949697405899
Q ss_pred HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCC-----C-----CC--
Q ss_conf 86664206805999983667402357778989970994156123312443320002210000132-----0-----00--
Q gi|254780787|r 447 RARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDV-----F-----VE-- 514 (884)
Q Consensus 447 r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~-----~-----~~-- 514 (884)
..|++.+||.||||||+.+||++||.-.|++|.+.++|+|++||||||+.++......++.+.+. . .+
T Consensus 92 V~~alrv~DgalvvVDaveGV~~qT~~v~rqa~~~~lp~il~iNKiDR~~ad~~~~~~~i~~~l~~~~~~~~~pi~~~~~ 171 (693)
T PRK12739 92 VERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRVVEQIKDRLGANAVPIQLPIGAEDD 171 (693)
T ss_pred HHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 99999984879999978988767799999999986989699997978899998999999999858977999742203655
Q ss_pred ------------------------------------------------------------------------------CC
Q ss_conf ------------------------------------------------------------------------------12
Q gi|254780787|r 515 ------------------------------------------------------------------------------SM 516 (884)
Q Consensus 515 ------------------------------------------------------------------------------~~ 516 (884)
..
T Consensus 172 f~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~v~e~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~ 251 (693)
T PRK12739 172 FKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAETDEELMEKYLEGEEITEEEIKAAIRKATIN 251 (693)
T ss_pred CCCEEEEECCEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 33114310057888504557983378107688999999999999999986528999998558778899999999999983
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCHHCCCC-----------------CCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Q ss_conf 34740363110024774112210000233-----------------3342000348666416777886377620000000
Q gi|254780787|r 517 GGDILDVEISAKNNLNLDKLLDAILLQAE-----------------MLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQ 579 (884)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (884)
+...+.+..|+.++.|+..||+++..+.- .......+..|..+++.-...|...|.++.+.++
T Consensus 252 ~~~~Pv~~gs~~~~~gv~~Lld~I~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~K~~~d~~~G~ia~~RV~ 331 (693)
T PRK12739 252 MEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDIPAIKGINPDTGEEVERPASDDEPFAALAFKIMTDPFVGRLTFFRVY 331 (693)
T ss_pred CCCCCCEECCCCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEEEECCCCCCEEEEECC
T ss_conf 76002032320038789999999997689912234433447887642350369998838999998884899817899934
Q ss_pred CCHHHCCCCCCCCCC--CCCCEECCCC---CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 000000000025665--5542000146---6532210000122211112347
Q gi|254780787|r 580 KGTLSKGNILVVGDQ--WGKIRALFND---RGQGISKAVPSMPIEVLGLQGM 626 (884)
Q Consensus 580 ~g~~~~~~~~~~~~~--~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 626 (884)
.|+++.|+.+.-... .-+|..++.. .-..+..+.++.++.+.|+...
T Consensus 332 sGtl~~g~~v~n~~~~~~~ki~~l~~~~g~~~~~v~~~~aG~Iv~i~Gl~~~ 383 (693)
T PRK12739 332 SGTLESGSYVLNTTKGKKERIGRLLQMHANKREEIKEVYAGDIGAAVGLKDT 383 (693)
T ss_pred CCEECCCCEEECCCCCCEEECCEEEEEECCCCEEEEEECCCCEEEEECCCCC
T ss_conf 7714699989646764224304047862687415217648976999644454
No 34
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=1e-34 Score=255.44 Aligned_cols=238 Identities=28% Similarity=0.304 Sum_probs=179.0
Q ss_pred EECCCCCHHHHHHHHHHHH-HH-------HC----------CCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHH
Q ss_conf 6236850446777886422-21-------00----------123100012149995178438888516615789998666
Q gi|254780787|r 389 MGHVDHGKTSLLDAIRKAD-VA-------KG----------EIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARG 450 (884)
Q Consensus 389 ~ghvd~GKt~lld~~r~~~-~~-------~~----------e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg 450 (884)
+||||||||||.|+|...+ .. +| -..|||.+-.+..+.|.+..|+|||||||.+|+....|.
T Consensus 1 iaHvd~GKTTL~e~lL~~sg~i~~~G~v~~g~t~~D~~~~E~eRgITI~ss~~s~~~~~~~iNlIDTPGHvDF~~EV~~a 80 (670)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISIQSAATTCEWKGHKINIIDTPGHVDFTGEVERA 80 (670)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCCCCHHHHHHHH
T ss_conf 98998888899999999659987576143897146780999973997322138898899899999297975148999999
Q ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCC-----C------------
Q ss_conf 42068059999836674023577789899709941561233124433200022100001320-----0------------
Q gi|254780787|r 451 ARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVF-----V------------ 513 (884)
Q Consensus 451 ~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~-----~------------ 513 (884)
+.+||.||||||+-+||++||.-.|+++.+.++|.|++||||||++++...+..++.+.... +
T Consensus 81 Lrv~DgAvlvVDaveGV~~qT~~v~r~a~~~~lp~ilvINKiDr~~a~~~~~l~~i~~~l~~~~~~~~~Pi~~~~~f~g~ 160 (670)
T PRK12740 81 LRVLDGAVVVVCAVGGVEVQTETVWRYAEEYGVPRIAFVNKLDRAGADFRRVLAQLQEALGAPVVPLQLPIGEGDDFKGV 160 (670)
T ss_pred HHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEE
T ss_conf 99868689999789997378999999999879996999979789999989999999998489835798550478844578
Q ss_pred --------------------------------------------------------CC---------------CCCCCEE
Q ss_conf --------------------------------------------------------01---------------2347403
Q gi|254780787|r 514 --------------------------------------------------------ES---------------MGGDILD 522 (884)
Q Consensus 514 --------------------------------------------------------~~---------------~~~~~~~ 522 (884)
.. .+.-.+.
T Consensus 161 iDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lle~i~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv 240 (670)
T PRK12740 161 VDLLSMKAYRYDDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEEPSEEEIKAGLRKGTRAGSIVPV 240 (670)
T ss_pred EECCCCEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEE
T ss_conf 52203568998278994377238788999999999999999874259999998767999999999999999970975789
Q ss_pred EEEEECCCCCCCCCCCCHHCCCC----------------CCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCC
Q ss_conf 63110024774112210000233----------------33420003486664167778863776200000000000000
Q gi|254780787|r 523 VEISAKNNLNLDKLLDAILLQAE----------------MLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKG 586 (884)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 586 (884)
+..|+..+.|+..||+++..+.- ......++..|..+++.-...+...|.++.+.++.|+|+.|
T Consensus 241 ~~gSa~~~~Gv~~LLd~I~~~lPsP~e~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~i~~~RV~sG~L~~g 320 (670)
T PRK12740 241 FCGSALKNKGVQRLLDAVVDYLPSPTEVPPRLGTDGEDEEPVLAPDPDGPLSALVFKTMDDPFVGKLSLVRVYSGTLKKG 320 (670)
T ss_pred EECCCCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCEECCC
T ss_conf 86254357788999999998789925425411447777632145799998289999847858897489999836675589
Q ss_pred CCCCCCCC--CCCCEECCCC---CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00025665--5542000146---6532210000122211112347
Q gi|254780787|r 587 NILVVGDQ--WGKIRALFND---RGQGISKAVPSMPIEVLGLQGM 626 (884)
Q Consensus 587 ~~~~~~~~--~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 626 (884)
+.+..... .-+|..++.. ....+..+.++.++-+.|+...
T Consensus 321 ~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aG~Iv~i~gl~~~ 365 (670)
T PRK12740 321 DTLLNSTTGKKERVGRLYRMHGKQQEEIDEAVAGDIVAVVKLKEA 365 (670)
T ss_pred CEEEECCCCCEEEEEEEEEECCCCCEEEEEEECCCEEEEECCCCC
T ss_conf 989835875158712357871576248899805978998456666
No 35
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=4.9e-34 Score=250.77 Aligned_cols=234 Identities=19% Similarity=0.198 Sum_probs=160.4
Q ss_pred EEEEECCCCCHHHHHHHHHH---------------HHHHHC------------------CCCCCEECCCEEEEECCCCEE
Q ss_conf 89862368504467778864---------------222100------------------123100012149995178438
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRK---------------ADVAKG------------------EIGGITQHIGAYQVAYQGKNI 432 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~---------------~~~~~~------------------e~ggitq~iga~~~~~~~~~~ 432 (884)
+.+.|||||||+||+..|.. ..-..| ...|||..++..+|.++..++
T Consensus 30 ~v~~GhVD~GKSTl~GrlL~~~~~v~~~~~~~~~~~s~~~g~~~~~~~~a~l~D~l~~ERe~GiTIdva~~~f~t~~r~~ 109 (475)
T PRK05124 30 FLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKF 109 (475)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHCCCEEEEEEEEEECCCEEE
T ss_conf 99990557977888899999819978899999999999828877722244420599889866971695678995387689
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEECCCCCCCCCCCCHHHHHH-HCCC
Q ss_conf 8885166157899986664206805999983667402357778989970994-1561233124433200022100-0013
Q gi|254780787|r 433 TFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVS-IIVAINKIDKLGADPQKVRMSL-LKHD 510 (884)
Q Consensus 433 ~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p-~iva~nk~d~~~~~~~~~~~~~-~~~~ 510 (884)
+++|||||+.|+..+..|++.+|+|||||||.+|+++||.||+.+++..+++ +|||+||||..+.. +....++ .+..
T Consensus 110 ~i~DaPGH~~f~~NMitGas~aD~aiLvVdA~~G~~~QTreH~~i~~llGI~~iIVaVNKMDlV~~~-~~~f~~I~~e~~ 188 (475)
T PRK05124 110 IIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYS-EEVFERIREDYL 188 (475)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECHHCCCCC-HHHHHHHHHHHH
T ss_conf 9973796387788898888767889999989889478889999999865998599998504313543-999999999999
Q ss_pred CCCCCCC--CCCEEEEEEECCCCCCCCCCCCHH---------CCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Q ss_conf 2000123--474036311002477411221000---------02333342000348666416777886377620000000
Q gi|254780787|r 511 VFVESMG--GDILDVEISAKNNLNLDKLLDAIL---------LQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQ 579 (884)
Q Consensus 511 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (884)
.+....+ .++.++|+||..|+|+-..-.... +.............|....+-........+....+.+.
T Consensus 189 ~~l~~~g~~~~v~~IPISal~GdNIv~~S~~m~WY~GptLle~Le~~~~~~~~~~~pfRlPVq~V~r~~~~~rg~~G~I~ 268 (475)
T PRK05124 189 TFAEQLPGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVLETVDIQREVDAQPFRFPVQYVNRPNLDFRGYAGTLA 268 (475)
T ss_pred HHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEE
T ss_conf 99997499888507754134576762156678745675399998558888765556655665798626877316889971
Q ss_pred CCHHHCCCCCCC--CCCCCCCEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 000000000025--665554200014665322100001222111
Q gi|254780787|r 580 KGTLSKGNILVV--GDQWGKIRALFNDRGQGISKAVPSMPIEVL 621 (884)
Q Consensus 580 ~g~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 621 (884)
.|.+..||.+.. .....+|+.+.... ..+..+.+++.|.+.
T Consensus 269 sG~i~~GD~V~vlPsg~~a~Vk~I~~~~-~~~~~A~aG~sV~l~ 311 (475)
T PRK05124 269 SGVVKVGDRVKVLPSGKESNVARIVTFD-GDLEEAFAGEAITLV 311 (475)
T ss_pred ECEECCCCEEEECCCCCEEEEEEEEECC-CCCCCCCCCCEEEEE
T ss_conf 3327179989993899758989999658-652543899879999
No 36
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-34 Score=253.69 Aligned_cols=240 Identities=29% Similarity=0.330 Sum_probs=185.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCC----------------CCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHH
Q ss_conf 3898623685044677788642221001----------------231000121499951784388885166157899986
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADVAKGE----------------IGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRA 448 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~~~~e----------------~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~ 448 (884)
-|+|+.|||||||||.|.|.+.+-...| ..|||+--..+.+.|.+.+|+++|||||++|--...
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVE 86 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVE 86 (603)
T ss_pred EEEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHCCCEEEECCCEEECCCEEEEEECCCCCCCCCCHHH
T ss_conf 06899984488102899998731654456520144037642344349389851524620883898765898677662545
Q ss_pred HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCC--CCCCCCCEEEEEE
Q ss_conf 66420680599998366740235777898997099415612331244332000221000013200--0123474036311
Q gi|254780787|r 449 RGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFV--ESMGGDILDVEIS 526 (884)
Q Consensus 449 rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 526 (884)
|..++.|.++|||||.+|.||||...++-|.+.+++.||++|||||+.+.++.+..+..+..... .+..-+.+.+..|
T Consensus 87 Rvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS 166 (603)
T COG1217 87 RVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYAS 166 (603)
T ss_pred HHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHCCCEEEEEE
T ss_conf 11432334899997555888731444899997499848999677899988789999999999981997455787079854
Q ss_pred ECCCCC----------CCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCCCCCC---
Q ss_conf 002477----------4112210000233334200034866641677788637762000000000000000002566---
Q gi|254780787|r 527 AKNNLN----------LDKLLDAILLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILVVGD--- 593 (884)
Q Consensus 527 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--- 593 (884)
+..|.- +..|+++|+- .......++..|....+...-.+...|....+.+++|+++.|+.+..-.
T Consensus 167 ~~~G~a~~~~~~~~~~m~pLfe~I~~--hvp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g 244 (603)
T COG1217 167 ARNGTASLDPEDEADDMAPLFETILD--HVPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDG 244 (603)
T ss_pred CCCCEECCCCCCCCCCHHHHHHHHHH--HCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCCCEEEEECCCC
T ss_conf 14751015865555531689999997--5899989998880789985224454522689998527254897689984799
Q ss_pred --CCCCCEECCCCCC---CCCCCCCCCCCCCCCCCCCC
Q ss_conf --5554200014665---32210000122211112347
Q gi|254780787|r 594 --QWGKIRALFNDRG---QGISKAVPSMPIEVLGLQGM 626 (884)
Q Consensus 594 --~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 626 (884)
..++|..++.-.| ..+.+|..+.++-+.|+...
T Consensus 245 ~~~~gri~kll~f~GL~R~ei~eA~AGDIvaiaG~~~~ 282 (603)
T COG1217 245 TTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDI 282 (603)
T ss_pred CEEEEEEEEEEECCCEEEEEHHHCCCCCEEEECCCCCC
T ss_conf 47755776665505423335001255678998276435
No 37
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=2.4e-34 Score=252.96 Aligned_cols=207 Identities=26% Similarity=0.359 Sum_probs=159.2
Q ss_pred CCCCE--EEEEECCCCCHHHHHHHHHHHHHH--HCC-CCCCEECCCEEEEEC----------------------------
Q ss_conf 55303--898623685044677788642221--001-231000121499951----------------------------
Q gi|254780787|r 381 IRPPV--VTIMGHVDHGKTSLLDAIRKADVA--KGE-IGGITQHIGAYQVAY---------------------------- 427 (884)
Q Consensus 381 ~R~pv--v~v~ghvd~GKt~lld~~r~~~~~--~~e-~ggitq~iga~~~~~---------------------------- 427 (884)
.|+|. |..+||||||||||.-+|.+.... ..| ..|||+++|...+..
T Consensus 33 ~~q~~vNIGtiGHVDHGKTTLvkALTgv~t~r~~eE~~RgiTI~LGya~~kiykc~~~~~p~~y~~~~s~~~~~~~c~~c 112 (460)
T PTZ00327 33 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFHREKVRNITIKLGYANAKIYKCTKCPPPACYKSYPSSKPDNPQCPGC 112 (460)
T ss_pred HCCCCEEEEEECCCCCCHHHHHHHHHCCCHHHCHHHHHCCCEEEECCCCEEEECCCCCCCCCCEECCCCCCCCCCCCCCC
T ss_conf 25882189887462898999999986775010656787587212054330111365677631010146666555445555
Q ss_pred -----CCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCC-CHHHHHHHHHHHHCCCC-EEEECCCCCCCCCCCC
Q ss_conf -----7843888851661578999866642068059999836674-02357778989970994-1561233124433200
Q gi|254780787|r 428 -----QGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEI-MPQAIESINHAKAADVS-IIVAINKIDKLGADPQ 500 (884)
Q Consensus 428 -----~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~-~~qt~e~~~~~~~~~~p-~iva~nk~d~~~~~~~ 500 (884)
..+++.|+|+|||+.|.+.+..|++..|.|||||||++|+ ||||.||+.+++..+++ +||++||+|+......
T Consensus 113 ~~~~t~~Rh~s~VDcPGH~~l~~nmi~Ga~~mD~aiLvvaa~eg~P~pQT~EHl~~~~~~gi~~~iv~~nK~DlV~~e~~ 192 (460)
T PTZ00327 113 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKEVQA 192 (460)
T ss_pred CCCCCCCEEEEEEECCCHHHHHHHHHHCHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHH
T ss_conf 65431220489986898799999987476337679999986888876468999999997289719999535445588999
Q ss_pred HH-HHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEEECC--------CC
Q ss_conf 02-2100001320001234740363110024774112210000233334200034866641677788637--------76
Q gi|254780787|r 501 KV-RMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAILLQAEMLDLKTSINRKAEGIVVEGKLDRG--------RG 571 (884)
Q Consensus 501 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 571 (884)
.. ..++.++.. ..++.+.+.+|+||..+.|++.|++.+..+-.. ..-+...|....+..++-..+ +|
T Consensus 193 ~~~~~ei~~~l~--~t~~~~~PIIpvSA~~~~nid~L~~~i~~~ip~--P~R~~~~~~~m~I~rsFdIngpg~~~~~lrG 268 (460)
T PTZ00327 193 LDQYEEIRNFID--GTIAENAPIIPISAQLKYNIDVLLEYICTQIPI--PKRDLTSPPRMIVIRSFDVNKPGEDIENLRG 268 (460)
T ss_pred HHHHHHHHHHHC--CCCCCCCCEEECCHHHCCCHHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEECCCCCCCCCCCCCC
T ss_conf 999999999852--576779998756544505879999999975899--9888899953748746715789866567654
Q ss_pred CCHHHHHHCCHHHCCCCCCC
Q ss_conf 20000000000000000025
Q gi|254780787|r 572 PVVTVLVQKGTLSKGNILVV 591 (884)
Q Consensus 572 ~~~~~~~~~g~~~~~~~~~~ 591 (884)
+|+++.+..|.++.||.+-.
T Consensus 269 tVvtGti~~G~lkvGDeIEI 288 (460)
T PTZ00327 269 GVAGGSILQGVLKVGDEVEI 288 (460)
T ss_pred EEEEEEEEEEEEECCCEEEE
T ss_conf 59988998817936998998
No 38
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=6.9e-34 Score=249.77 Aligned_cols=242 Identities=25% Similarity=0.269 Sum_probs=172.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHHH-H-------HH----------CCCCCCEECCCEEEEECC-CCEEEEEECCCHHHHHH
Q ss_conf 38986236850446777886422-2-------10----------012310001214999517-84388885166157899
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKAD-V-------AK----------GEIGGITQHIGAYQVAYQ-GKNITFLDTPGHAAFYE 445 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~-~-------~~----------~e~ggitq~iga~~~~~~-~~~~~~iDtPGh~~f~~ 445 (884)
-|||+||||||||||.|+|...+ + .+ ....|||.+-.+..+.|. .+.++|||||||.+|+.
T Consensus 12 Ni~IiaHvd~GKTTL~e~lL~~sg~i~~~G~v~~g~t~~D~~~~E~eRgITI~s~~~s~~~~~~~~iNlIDTPGHvDF~~ 91 (693)
T PRK00007 12 NIGIMAHIDAGKTTTTERILFYTGVSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDGHRINIIDTPGHVDFTI 91 (693)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHCCCCEEECEEEEEECCCEEEEEEECCCCCCHHH
T ss_conf 99999169999899999999966984658424389855678288997698873222548826973899991979752489
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCC-----CC-----C-
Q ss_conf 986664206805999983667402357778989970994156123312443320002210000132-----00-----0-
Q gi|254780787|r 446 MRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDV-----FV-----E- 514 (884)
Q Consensus 446 ~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~-----~~-----~- 514 (884)
...|.+.+||.||||||+-+||++||.-.|++|.+.++|.|++||||||+.++......++.+.+. .+ +
T Consensus 92 Ev~~aLrv~DgAvlVvDav~GV~~qT~~v~r~a~~~~lp~i~fINK~Dr~~ad~~~~l~~i~~~l~~~~~~~~~pi~~~~ 171 (693)
T PRK00007 92 EVERSLRVLDGAVAVFCAVGGVEPQSETVWRQADKYKVPRIVFVNKMDRTGADFLRVVEQIKDRLGANPVPIQLPIGAED 171 (693)
T ss_pred HHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCC
T ss_conf 99999998586899998898877779999999987598969999797789999899999999985997689984002477
Q ss_pred --------------CC----------------------------------------------------------------
Q ss_conf --------------12----------------------------------------------------------------
Q gi|254780787|r 515 --------------SM---------------------------------------------------------------- 516 (884)
Q Consensus 515 --------------~~---------------------------------------------------------------- 516 (884)
.|
T Consensus 172 ~f~g~vdl~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~r~~l~e~vae~dd~lle~yl~~~~~~~~el~~~lr~~~~ 251 (693)
T PRK00007 172 DFKGVVDLVKMKAIIWDDDDLGTTFEYEEIPADLKDKAEEYREKLVEAAAEADEELMEKYLEGEELTEEEIKAALRKGTL 251 (693)
T ss_pred CCCCEEEEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 64330330000133213334687137701858999999999999999998549999999855788999999999999887
Q ss_pred -CCCCEEEEEEECCCCCCCCCCCCHHCCCC------------------CCCCCCCCCCCCCCEEEEEEEECCCCCCHHHH
Q ss_conf -34740363110024774112210000233------------------33420003486664167778863776200000
Q gi|254780787|r 517 -GGDILDVEISAKNNLNLDKLLDAILLQAE------------------MLDLKTSINRKAEGIVVEGKLDRGRGPVVTVL 577 (884)
Q Consensus 517 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (884)
+...+....||..+.|+..||+++..+.- .......+..|..++++-...|...|.++.+.
T Consensus 252 ~~~~~Pv~~gsa~~~~Gv~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~pl~a~vfK~~~dp~~G~ls~~R 331 (693)
T PRK00007 252 ANEIVPVLCGSAFKNKGVQPMLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKIMTDPFVGKLTFFR 331 (693)
T ss_pred HCCEEEHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCEEEECCCCCCCCEEEEEEEEECCCCCCEEEEE
T ss_conf 27656610265434878999999999867992125650020689874035642698777146875567748998268898
Q ss_pred HHCCHHHCCCCCCCCCC--CCCCEE---CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00000000000025665--554200---01466532210000122211112347
Q gi|254780787|r 578 VQKGTLSKGNILVVGDQ--WGKIRA---LFNDRGQGISKAVPSMPIEVLGLQGM 626 (884)
Q Consensus 578 ~~~g~~~~~~~~~~~~~--~~~v~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (884)
|+.|+|+.|+.+.-... .-+|.. +.......+..+.++.++-+.|+...
T Consensus 332 V~SGtl~~g~~v~n~~~~~~e~i~~l~~~~g~~~~~v~~~~AGdIvai~gL~~~ 385 (693)
T PRK00007 332 VYSGVLNSGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDIAAAVGLKDT 385 (693)
T ss_pred ECCCCCCCCCEEECCCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEECCCCE
T ss_conf 225723689863146543211356338985588516007727964898533430
No 39
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=100.00 E-value=8.1e-34 Score=249.30 Aligned_cols=152 Identities=22% Similarity=0.307 Sum_probs=123.2
Q ss_pred EEEEECCCCCHHHHHHHHHH-HHHH------------------------------HCCCCCCEECCCEEEEECCCCEEEE
Q ss_conf 89862368504467778864-2221------------------------------0012310001214999517843888
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRK-ADVA------------------------------KGEIGGITQHIGAYQVAYQGKNITF 434 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~-~~~~------------------------------~~e~ggitq~iga~~~~~~~~~~~~ 434 (884)
++|+||||||||||++.|.. ++.. .....|||+.++..+|.+++.+++|
T Consensus 2 ~vv~GHVD~GKSTL~g~LL~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~lD~~~~ErerGiTId~~~~~f~~~~~~~~i 81 (208)
T cd04166 2 FLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFII 81 (208)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHCCCCEEEEEEEEEECCCEEEE
T ss_conf 69997488988899999999829967899999998875416763000343468687882697941058999819926999
Q ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEECCCCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf 85166157899986664206805999983667402357778989970994-15612331244332000221000013200
Q gi|254780787|r 435 LDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVS-IIVAINKIDKLGADPQKVRMSLLKHDVFV 513 (884)
Q Consensus 435 iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p-~iva~nk~d~~~~~~~~~~~~~~~~~~~~ 513 (884)
||||||+.|+.++.+|++.+|+|||||||.+|+++||.||+.+++..+++ +|||+||||+.....++...-..+...+.
T Consensus 82 iDtPGH~dfi~nmi~gas~aD~ailVVda~~G~~~QT~eh~~~~~~lgi~~iIv~vNKmD~v~~~e~~f~~i~~~~~~~l 161 (208)
T cd04166 82 ADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFA 161 (208)
T ss_pred EECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 87896288999999998637747999975888727899999999974998399999885768999899999999999999
Q ss_pred CCCC-CCCEEEEEEECCCCCCCCCC
Q ss_conf 0123-47403631100247741122
Q gi|254780787|r 514 ESMG-GDILDVEISAKNNLNLDKLL 537 (884)
Q Consensus 514 ~~~~-~~~~~~~~~~~~~~~~~~~~ 537 (884)
..++ ....++|+||..|+|+-..-
T Consensus 162 ~~~~~~~~~~IPiSa~~GdNi~~~s 186 (208)
T cd04166 162 AKLGIEDITFIPISALDGDNVVSRS 186 (208)
T ss_pred HHCCCCCCEEEEEECCCCCCCCCCC
T ss_conf 9749988719981267788878699
No 40
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=100.00 E-value=4.6e-33 Score=244.12 Aligned_cols=150 Identities=28% Similarity=0.297 Sum_probs=120.3
Q ss_pred EEEEECCCCCHHHHHHHHHH-HH-----------HHHCC-------------------CCCCEECCCEEEEECCCCEEEE
Q ss_conf 89862368504467778864-22-----------21001-------------------2310001214999517843888
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRK-AD-----------VAKGE-------------------IGGITQHIGAYQVAYQGKNITF 434 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~-~~-----------~~~~e-------------------~ggitq~iga~~~~~~~~~~~~ 434 (884)
|+|+||||||||||++.|.. +. ....+ ..|||+.++..+|.++..+++|
T Consensus 2 i~iiGHvD~GKSTL~g~lL~~~g~i~~~~~~k~~~~~~~~gk~s~~~a~~lD~~~~ErerGiTI~~~~~~f~~~~~~~~i 81 (219)
T cd01883 2 LVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFTI 81 (219)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCCCEEEEEEEEEECCEEEEE
T ss_conf 89996689989999999999859976889999999998549987505566138987985892588589999849936999
Q ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEEECCCC-------CCHHHHHHHHHHHHCCCC-EEEECCCCCCCC-CCCCHHHH-
Q ss_conf 85166157899986664206805999983667-------402357778989970994-156123312443-32000221-
Q gi|254780787|r 435 LDTPGHAAFYEMRARGARVTDIAVLVLAADEE-------IMPQAIESINHAKAADVS-IIVAINKIDKLG-ADPQKVRM- 504 (884)
Q Consensus 435 iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g-------~~~qt~e~~~~~~~~~~p-~iva~nk~d~~~-~~~~~~~~- 504 (884)
||||||..|+..+.+|++.+|+|||||||.+| +++||.||+.+++..+++ +|||+||||+.. .|.+....
T Consensus 82 iDtPGH~df~~~mi~g~~~ad~ailvvda~~g~~e~g~~~~~QTreH~~l~~~lGik~iIVavNKMD~v~~~y~~~rf~~ 161 (219)
T cd01883 82 LDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYDE 161 (219)
T ss_pred EECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHH
T ss_conf 87897266788999877531668999985767510366777659999999998499748999987536886525999999
Q ss_pred ---HHHCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf ---0000132000123474036311002477411
Q gi|254780787|r 505 ---SLLKHDVFVESMGGDILDVEISAKNNLNLDK 535 (884)
Q Consensus 505 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (884)
++..+.....-...+..++|+||..|+|+-.
T Consensus 162 i~~~~~~~l~~~g~~~~~~~~IPiSa~~GdNi~~ 195 (219)
T cd01883 162 IKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC
T ss_conf 9999999999829995661599933676630466
No 41
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=100.00 E-value=5.1e-33 Score=243.85 Aligned_cols=155 Identities=28% Similarity=0.419 Sum_probs=127.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHH---HHHHCCCCCCEECCCEEEEEC-CCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 3898623685044677788642---221001231000121499951-784388885166157899986664206805999
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKA---DVAKGEIGGITQHIGAYQVAY-QGKNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~---~~~~~e~ggitq~iga~~~~~-~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
||+|+||+|||||||+++|.+. .+......|||+.++..++.+ .+..++|||||||+.|...+.+|+..+|+|+||
T Consensus 2 vVaivG~~n~GKSTL~n~L~g~~~d~~~~e~~~giTi~~~~~~~~~~~~~~i~~iDtPGh~~~~~~~~~~~~~aD~~llV 81 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV 81 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCHHHHCCCEEEEEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHCCEEEEE
T ss_conf 99999268872999999984964663333334863798546878648998999994878799999999987426725899
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCC-EEEECCCCCCCCCCC-CHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 983667402357778989970994-156123312443320-002210000132000123474036311002477411221
Q gi|254780787|r 461 LAADEEIMPQAIESINHAKAADVS-IIVAINKIDKLGADP-QKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLD 538 (884)
Q Consensus 461 v~~~~g~~~qt~e~~~~~~~~~~p-~iva~nk~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (884)
||+.+|+++||.|++.+++..++| +|||+||+|+..... .....++..... .......+.+++||++|+|+++|++
T Consensus 82 vda~~g~~~q~~e~~~~~~~~~i~~~ivvlNK~D~v~~~~~~~~~~~i~~~l~--~~~~~~~pii~iSA~tG~Gi~eL~~ 159 (164)
T cd04171 82 VAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLA--GTFLADAPIFPVSAVTGEGIEELKE 159 (164)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH--HCCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 86177888889999999987388727873463425797899999999999997--4399998299946989829999999
Q ss_pred CHH
Q ss_conf 000
Q gi|254780787|r 539 AIL 541 (884)
Q Consensus 539 ~~~ 541 (884)
++.
T Consensus 160 ~I~ 162 (164)
T cd04171 160 YLD 162 (164)
T ss_pred HHH
T ss_conf 998
No 42
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-32 Score=241.81 Aligned_cols=244 Identities=28% Similarity=0.292 Sum_probs=175.0
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHH-H-------HHHC---------C-CCCCEECCCEEEEECCC-CEEEEEECCCHHHH
Q ss_conf 303898623685044677788642-2-------2100---------1-23100012149995178-43888851661578
Q gi|254780787|r 383 PPVVTIMGHVDHGKTSLLDAIRKA-D-------VAKG---------E-IGGITQHIGAYQVAYQG-KNITFLDTPGHAAF 443 (884)
Q Consensus 383 ~pvv~v~ghvd~GKt~lld~~r~~-~-------~~~~---------e-~ggitq~iga~~~~~~~-~~~~~iDtPGh~~f 443 (884)
-=-|+||||||||||||.|+|.-. . |-+| | ..|||.+..|+.+.|.+ .+|+|||||||-+|
T Consensus 10 ~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDF 89 (697)
T COG0480 10 IRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDF 89 (697)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEEEEEEECCCEEEEEECCCCCCCC
T ss_conf 40799996047880778899998759757785566786547887889866977864056899708658999579973534
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCC----------CC
Q ss_conf 99986664206805999983667402357778989970994156123312443320002210000132----------00
Q gi|254780787|r 444 YEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDV----------FV 513 (884)
Q Consensus 444 ~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~----------~~ 513 (884)
+....|.+.+||.||+|||+.+||+|||.-.|+.|..+++|.|+++|||||..++...+..++...+. ..
T Consensus 90 t~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v~~pIg~ 169 (697)
T COG0480 90 TIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVPVQLPIGA 169 (697)
T ss_pred HHHHHHHHHHHCCEEEEEECCCCEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 77879988861650999988788300379999998655997599997843355673350999999867983223211157
Q ss_pred C-CC--------------------------------------------------------CC------------------
Q ss_conf 0-12--------------------------------------------------------34------------------
Q gi|254780787|r 514 E-SM--------------------------------------------------------GG------------------ 518 (884)
Q Consensus 514 ~-~~--------------------------------------------------------~~------------------ 518 (884)
+ .+ .+
T Consensus 170 ~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i~~~~~~ 249 (697)
T COG0480 170 EEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKALRKGTIA 249 (697)
T ss_pred CCCCCCEEEHHHCCEEEECCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf 30047636711067179757752431558778876789999999998861579999998668876479999999876532
Q ss_pred --CCEEEEEEECCCCCCCCCCCCHHCCCCCC------------------CCCCCCCCCCCCEEEEEEEECCCCCCHHHHH
Q ss_conf --74036311002477411221000023333------------------4200034866641677788637762000000
Q gi|254780787|r 519 --DILDVEISAKNNLNLDKLLDAILLQAEML------------------DLKTSINRKAEGIVVEGKLDRGRGPVVTVLV 578 (884)
Q Consensus 519 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (884)
..+.+.-|+..+-|+..+|+++..+.-.. ........|.++.++-...|...|.+..+.+
T Consensus 250 ~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~l~~~Rv 329 (697)
T COG0480 250 GKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGKLTFVRV 329 (697)
T ss_pred CCEEEEEEEEECCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHCCCCCCCCCEEEEEEEEEECCCCCEEEEEEE
T ss_conf 66256775010257757999999998789956645444767753230000468888865999999686487875999998
Q ss_pred HCCHHHCCCCCCCCCCC--CCCEECCC---CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00000000000256655--54200014---66532210000122211112347
Q gi|254780787|r 579 QKGTLSKGNILVVGDQW--GKIRALFN---DRGQGISKAVPSMPIEVLGLQGM 626 (884)
Q Consensus 579 ~~g~~~~~~~~~~~~~~--~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 626 (884)
+.|+++.|+.+..+... .++-.++. ..-..+..+..+.++-+.|+...
T Consensus 330 ysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~ 382 (697)
T COG0480 330 YSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDA 382 (697)
T ss_pred ECCEECCCCEEEECCCCCCEEEEEEEECCCCCEEECCCCCCCCEEEEECCCCC
T ss_conf 64377379889957998537877898716895026054057648999752355
No 43
>pfam00009 GTP_EFTU Elongation factor Tu GTP binding domain. This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.
Probab=100.00 E-value=8.7e-33 Score=242.23 Aligned_cols=161 Identities=37% Similarity=0.467 Sum_probs=133.6
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHH-----------------HCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHH
Q ss_conf 5303898623685044677788642221-----------------00123100012149995178438888516615789
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKADVA-----------------KGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFY 444 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~~~~-----------------~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~ 444 (884)
|-+.|+|+||+|||||||+++|...... .....|||++.++..+.+++..++|||||||..|.
T Consensus 2 ~~rnVaivG~~n~GKSTL~n~Ll~~~~~i~~~~~~~~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~i~~iDtPGh~~f~ 81 (185)
T pfam00009 2 RHRNIGIIGHVDHGKTTLTDALLYVTGAIDKRGEVKQEGELDRLKEERERGITIKIAAVSFETKKRHINIIDTPGHVDFT 81 (185)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEEEEEEECCCEEEEEECCCCCCHH
T ss_conf 96789999389944999999997154876546431003333655888857826987699996089368999899871439
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCC-CCCCHHHHHHHCCCCCCCCCC-CCCEE
Q ss_conf 9986664206805999983667402357778989970994156123312443-320002210000132000123-47403
Q gi|254780787|r 445 EMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLG-ADPQKVRMSLLKHDVFVESMG-GDILD 522 (884)
Q Consensus 445 ~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~ 522 (884)
.++.+|++.+|++||||||.+|+++||.++|.++...++|+|+|+||||+.. ........++.........++ ...+.
T Consensus 82 ~~~~~~l~~aD~~vlVvda~~G~~~qt~~~~~~~~~~~~p~iv~vNKiD~v~~~~~~~~~~e~~~~ll~~~~~~~~~~pi 161 (185)
T pfam00009 82 KEMIRGAAQADGAILVVDAVEGVMPQTREHLLLAKQLGVPIIVFINKMDRVDDAELDEVVEEISRELLEKYGFGGETIPV 161 (185)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 99999986465642999867685323099999999828987999977327776769999999999988873248998869
Q ss_pred EEEEECCCCCCCCCCCCHHC
Q ss_conf 63110024774112210000
Q gi|254780787|r 523 VEISAKNNLNLDKLLDAILL 542 (884)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~ 542 (884)
+++||++|.|++.|++.+..
T Consensus 162 vpiSA~~G~gv~~Ll~~i~~ 181 (185)
T pfam00009 162 IPGSALTGEGIDTLLEALDL 181 (185)
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99678999798999999997
No 44
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.2e-33 Score=243.79 Aligned_cols=201 Identities=27% Similarity=0.387 Sum_probs=173.0
Q ss_pred EEEEEECCCCCHHHHHHHHHH-HHHHH-C-------------CCCCCEECCCEEEEECC-----CCEEEEEECCCHHHHH
Q ss_conf 389862368504467778864-22210-0-------------12310001214999517-----8438888516615789
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRK-ADVAK-G-------------EIGGITQHIGAYQVAYQ-----GKNITFLDTPGHAAFY 444 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~-~~~~~-~-------------e~ggitq~iga~~~~~~-----~~~~~~iDtPGh~~f~ 444 (884)
-+||+.|+||||+||-|+|.. |+..+ . ...|||...-+..+.+. .+.++|||||||-+|+
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCEEEEEECCCCCCCCEE
T ss_conf 22799984278204889999984676767888875221346766284587327899999479977999972799844367
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEE
Q ss_conf 99866642068059999836674023577789899709941561233124433200022100001320001234740363
Q gi|254780787|r 445 EMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVE 524 (884)
Q Consensus 445 ~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (884)
...+|.+..|..|+|||||..||+.||+-...+|-..++-+|.+|||||+|.++++++..++.+..-.... ..+.
T Consensus 91 YEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~-----dav~ 165 (603)
T COG0481 91 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDAS-----DAVL 165 (603)
T ss_pred EEEHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCC-----CCEE
T ss_conf 77613376377718999876553788999999998769679975322568878978999999987098952-----0046
Q ss_pred EEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCCCCC
Q ss_conf 11002477411221000023333420003486664167778863776200000000000000000256
Q gi|254780787|r 525 ISAKNNLNLDKLLDAILLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILVVG 592 (884)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 592 (884)
+||++|.|++++|++|. ......+..+..|..+.+++++.|..+|.++.+.+..|+++.||-+-..
T Consensus 166 ~SAKtG~gI~~iLe~Iv--~~iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m 231 (603)
T COG0481 166 VSAKTGIGIEDVLEAIV--EKIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMM 231 (603)
T ss_pred EECCCCCCHHHHHHHHH--HHCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEECEECCCCEEEEE
T ss_conf 76346899799999999--6289898999875158888412345542899999862434479989997
No 45
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=6e-32 Score=236.52 Aligned_cols=228 Identities=25% Similarity=0.317 Sum_probs=172.1
Q ss_pred EEEEECCCCCHHHHHHHHH------------HHHHHHCC-------------------CCCCEECCCEEEEECCCCEEEE
Q ss_conf 8986236850446777886------------42221001-------------------2310001214999517843888
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIR------------KADVAKGE-------------------IGGITQHIGAYQVAYQGKNITF 434 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r------------~~~~~~~e-------------------~ggitq~iga~~~~~~~~~~~~ 434 (884)
++++|||||||+||+..|. +-...+.+ ..|+|..++..+|+++...+|+
T Consensus 10 l~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~~tI 89 (428)
T COG5256 10 LVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYNFTI 89 (428)
T ss_pred EEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCEEEEEEEEEEECCCCEEEE
T ss_conf 99983787870344556577737979899999999998619771689998538866786666899777886437705899
Q ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEEECCCC-------CCHHHHHHHHHHHHCCCC-EEEECCCCCCCCCCCCHHHHHH
Q ss_conf 85166157899986664206805999983667-------402357778989970994-1561233124433200022100
Q gi|254780787|r 435 LDTPGHAAFYEMRARGARVTDIAVLVLAADEE-------IMPQAIESINHAKAADVS-IIVAINKIDKLGADPQKVRMSL 506 (884)
Q Consensus 435 iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g-------~~~qt~e~~~~~~~~~~p-~iva~nk~d~~~~~~~~~~~~~ 506 (884)
||||||..|...+..|+|.+|.||||||+..| +++||.||+.|++..++. +|||+||||.+. |.+....++
T Consensus 90 iDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~-wde~rf~ei 168 (428)
T COG5256 90 IDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVS-WDEERFEEI 168 (428)
T ss_pred EECCCHHHHHHHHHCCHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCC-CCHHHHHHH
T ss_conf 6078467789876313313367999998889831014365875167899998569756999997156666-279999999
Q ss_pred HCCCC-CCCCCCC---CCEEEEEEECCCCCCCCCC------------CCHHCCCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf 00132-0001234---7403631100247741122------------100002333342000348666416777886377
Q gi|254780787|r 507 LKHDV-FVESMGG---DILDVEISAKNNLNLDKLL------------DAILLQAEMLDLKTSINRKAEGIVVEGKLDRGR 570 (884)
Q Consensus 507 ~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (884)
..... +....|. +..++|+|+..|+|+...- +++. ..... .-....|....+.+.+...+.
T Consensus 169 ~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd-~~~~p--~~~~d~Plr~pI~~v~~i~~~ 245 (428)
T COG5256 169 VSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALD-QLEPP--ERPLDKPLRLPIQDVYSISGI 245 (428)
T ss_pred HHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH-CCCCC--CCCCCCCEEEEEEEEEEECCC
T ss_conf 999999999719986677079622446776332676786724871898974-55789--877788817680017871688
Q ss_pred CCCHHHHHHCCHHHCCCCCCCC--CCCCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf 6200000000000000000256--65554200014665322100001222
Q gi|254780787|r 571 GPVVTVLVQKGTLSKGNILVVG--DQWGKIRALFNDRGQGISKAVPSMPI 618 (884)
Q Consensus 571 ~~~~~~~~~~g~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~ 618 (884)
|++....+..|.++.|+.+... ...+.|+.+... ...+..+.|+.-+
T Consensus 246 gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~-~~~~~~a~~GD~i 294 (428)
T COG5256 246 GTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMH-HEEISQAEPGDNV 294 (428)
T ss_pred CEEEEEEEEEEEECCCCEEEEECCCCEEEEEEEEEC-CCCCCCCCCCCEE
T ss_conf 547887886134516987999648612787645612-6654447898768
No 46
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.98 E-value=1.4e-31 Score=233.94 Aligned_cols=235 Identities=19% Similarity=0.235 Sum_probs=161.0
Q ss_pred EEEEECCCCCHHHHHHHH---------------HHHHHHHCC------------------CCCCEECCCEEEEECCCCEE
Q ss_conf 898623685044677788---------------642221001------------------23100012149995178438
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAI---------------RKADVAKGE------------------IGGITQHIGAYQVAYQGKNI 432 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~---------------r~~~~~~~e------------------~ggitq~iga~~~~~~~~~~ 432 (884)
+++.|||||||+||+..| ++.+-..|- .-|||+.++-.+|.++.+++
T Consensus 10 ~~~~G~VD~GKSTliGrlL~dt~~i~~d~~~~~~~~s~~~g~~~~~~~~a~l~D~l~~EreqGiTIDva~~~F~t~~r~~ 89 (613)
T PRK05506 10 FITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFSTPKRKF 89 (613)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHCCCEEEEEEEEEECCCEEE
T ss_conf 99993667978889889999819967899999999999818988860354421488889855971685677884387059
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEECCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf 8885166157899986664206805999983667402357778989970994-156123312443320002210000132
Q gi|254780787|r 433 TFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVS-IIVAINKIDKLGADPQKVRMSLLKHDV 511 (884)
Q Consensus 433 ~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p-~iva~nk~d~~~~~~~~~~~~~~~~~~ 511 (884)
+++|||||+.|+..+..|||.+|+|||||||..|+.+||.+|..++...+++ +|||+||||+.+....+...-..++..
T Consensus 90 ~i~DaPGH~~y~rNMitgAs~ad~AilliDa~~G~~~QTrrH~~i~~llGI~~iivaVNKMDlV~y~~~~f~~I~~~~~~ 169 (613)
T PRK05506 90 IVADTPGHEQYTRNMATGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHIVLAVNKMDLVDYDQEVFDRIVADYLA 169 (613)
T ss_pred EEECCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 99428967989989998786538799999888795155189999998729875999985201247819999999999999
Q ss_pred CCCCCC-CCCEEEEEEECCCCCCCCCCCCHHCCC--------CCCCC-CCCCCCCCCCEEEEEEEECCCCCCHHHHHHCC
Q ss_conf 000123-474036311002477411221000023--------33342-00034866641677788637762000000000
Q gi|254780787|r 512 FVESMG-GDILDVEISAKNNLNLDKLLDAILLQA--------EMLDL-KTSINRKAEGIVVEGKLDRGRGPVVTVLVQKG 581 (884)
Q Consensus 512 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 581 (884)
+....+ .+..++|+||+.|+|+-..=.....|. +.... ......|..-.|=.............+.+..|
T Consensus 170 ~~~~l~~~~~~~IPISAl~GDNVv~~S~~m~WY~GptLle~Le~~~~~~~~~~~~fR~PVQ~V~Rp~~dfRgyaGrI~sG 249 (613)
T PRK05506 170 FAAKLGLTDVTFIPISALKGDNVVTRSARTPWYEGPSLLEHLETVEIAGDRNLKDFRFPVQYVNRPNLDFRGFAGTVASG 249 (613)
T ss_pred HHHHCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCE
T ss_conf 99657998875996735748747678878866678658999737787866445671211178744787505799998413
Q ss_pred HHHCCCCCCC--CCCCCCCEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0000000025--665554200014665322100001222111
Q gi|254780787|r 582 TLSKGNILVV--GDQWGKIRALFNDRGQGISKAVPSMPIEVL 621 (884)
Q Consensus 582 ~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 621 (884)
.++.||.+.. .....+|+.+.. .+..+..+..++.+.+.
T Consensus 250 ~ikvGD~V~vlPSg~~s~Vk~I~~-~~~~~~~A~agqSVtlt 290 (613)
T PRK05506 250 VVRPGDEVVVLPSGKTSRVKRIVT-YDGELDEAFAGQAVTLT 290 (613)
T ss_pred EECCCCEEEECCCCCEEEEEEEEC-CCCCHHHCCCCCEEEEE
T ss_conf 672699899878998799999986-89976413389808999
No 47
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.98 E-value=3.5e-32 Score=238.06 Aligned_cols=114 Identities=32% Similarity=0.463 Sum_probs=96.8
Q ss_pred EEEEEECCCCCHHHHHHHHHH-HHHH------------------HCCCCCCEECCCEEEEECCC-----CEEEEEECCCH
Q ss_conf 389862368504467778864-2221------------------00123100012149995178-----43888851661
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRK-ADVA------------------KGEIGGITQHIGAYQVAYQG-----KNITFLDTPGH 440 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~-~~~~------------------~~e~ggitq~iga~~~~~~~-----~~~~~iDtPGh 440 (884)
-|||+||||||||||+|+|.. |+.. .....|||..-..+.+.+.. ..++|||||||
T Consensus 2 NvaiigHvdhGKTTL~d~Ll~~t~~~~~~~~~~~~~~~~~D~~~~E~eRgiTI~s~~~sl~~~~~~~k~~~inlIDTPGH 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCEECCEEEEEEECCCCCEEEEEEEECCCC
T ss_conf 59998278989899999999973445554044421135751646654203558614599998256675057877889872
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCC
Q ss_conf 5789998666420680599998366740235777898997099415612331244332
Q gi|254780787|r 441 AAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGAD 498 (884)
Q Consensus 441 ~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~ 498 (884)
..|+..+.+|+++||+||||||+.+|+||||.++|++|...++|+|++||||||+-..
T Consensus 82 ~dF~~ev~~al~~~DgailVVDa~eGv~~qT~~~l~~a~~~~l~~ilviNKiDRLi~e 139 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILE 139 (213)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHH
T ss_conf 4179999988863776799998788875779999999998699989999882343144
No 48
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.98 E-value=3.9e-32 Score=237.79 Aligned_cols=113 Identities=31% Similarity=0.415 Sum_probs=95.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHH-HHH-HC--------------CCCCCEECCCEEEEE----------CCCCEEEEEECC
Q ss_conf 3898623685044677788642-221-00--------------123100012149995----------178438888516
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKA-DVA-KG--------------EIGGITQHIGAYQVA----------YQGKNITFLDTP 438 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~-~~~-~~--------------e~ggitq~iga~~~~----------~~~~~~~~iDtP 438 (884)
-|||+||||||||||+|+|... .+. .. ...|||++..+..+. +....++|||||
T Consensus 2 Ni~iigHvdhGKTTL~D~Ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTIks~~isl~~~~~~~~~~~~~~~~inlIDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCHHCCCCEEECCCHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCEEEEEEECC
T ss_conf 69998668877999999999985984121066346514243342054158622689998603443456886389997288
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf 61578999866642068059999836674023577789899709941561233124433
Q gi|254780787|r 439 GHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGA 497 (884)
Q Consensus 439 Gh~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~ 497 (884)
||..|+..+.||+++||+||||||+.+|+||||.++|+++...++|+|++||||||+-.
T Consensus 82 GH~dF~~ev~~al~~~DgailVVDa~eGv~~qT~~vl~~a~~~~l~~il~iNKiDRli~ 140 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLIL 140 (222)
T ss_pred CHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCH
T ss_conf 56989999999998568179961045785778999999999859997999989036500
No 49
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.2e-31 Score=234.46 Aligned_cols=203 Identities=30% Similarity=0.330 Sum_probs=153.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHH----------------HHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHH
Q ss_conf 89862368504467778864222----------------10012310001214999517843888851661578999866
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADV----------------AKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRAR 449 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~----------------~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~r 449 (884)
|..+||||||||||.-+|...-. ...-+.|||++....++.+.+....++|||||++|..++..
T Consensus 15 igtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvKNMIt 94 (394)
T COG0050 15 VGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVKNMIT 94 (394)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHCCCEECCCEEEEECCCCEEEECCCCCHHHHHHHHHH
T ss_conf 87861424763528999999998632401033344304826764572540100588638814886168974899998764
Q ss_pred HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEECCCCCCCCCC--CCHHHHHHHCCCCCCCCCCCCCEEEEEE
Q ss_conf 64206805999983667402357778989970994-15612331244332--0002210000132000123474036311
Q gi|254780787|r 450 GARVTDIAVLVLAADEEIMPQAIESINHAKAADVS-IIVAINKIDKLGAD--PQKVRMSLLKHDVFVESMGGDILDVEIS 526 (884)
Q Consensus 450 g~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p-~iva~nk~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (884)
||...|.|||||+|.||.||||+|||.|++..++| +||++||+|..... .+.+..+..+.+....-.|.+.+.+.-|
T Consensus 95 gAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gS 174 (394)
T COG0050 95 GAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGS 174 (394)
T ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECH
T ss_conf 07753762899984789998605642012342885799997422366868999999999999999739998776334112
Q ss_pred ECCC-CCC-------CCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCCC
Q ss_conf 0024-774-------112210000233334200034866641677788637762000000000000000002
Q gi|254780787|r 527 AKNN-LNL-------DKLLDAILLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILV 590 (884)
Q Consensus 527 ~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 590 (884)
++.- ++- .+|++++..+-... .-....|....+-+.+-..|+|++.+..+..|+++.|+.+.
T Consensus 175 al~ale~~~~~~~~i~eLm~avd~yip~P--er~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~eve 244 (394)
T COG0050 175 ALKALEGDAKWEAKIEELMDAVDSYIPTP--ERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEVE 244 (394)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCEEEEEECCCEEEEEEEEEEEEECCCCEEE
T ss_conf 33310377216789999999998548999--86556652010100689757516898788401241587799
No 50
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.3e-31 Score=234.12 Aligned_cols=226 Identities=23% Similarity=0.315 Sum_probs=177.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHCC-CCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 38986236850446777886422--21001-2310001214999517843888851661578999866642068059999
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKAD--VAKGE-IGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVL 461 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~--~~~~e-~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv 461 (884)
||.-+||||||||||+-++.... ....| ..|||..||.|+.+.+.+.++|||+|||+.|.+.+.-|++..|.|+|||
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred EEEEEEEEECCCHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf 69974002014302233302553320545661584684205732577773688618984788999985405774589998
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCE-EEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCH
Q ss_conf 836674023577789899709941-5612331244332000221000013200012347403631100247741122100
Q gi|254780787|r 462 AADEEIMPQAIESINHAKAADVSI-IVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAI 540 (884)
Q Consensus 462 ~~~~g~~~qt~e~~~~~~~~~~p~-iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (884)
|+++|+|+||.||+.+++..+++- |||+||+|+.... +..+...+...... -.+...+++|+.+|+|+++|.+.+
T Consensus 82 ~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~--r~e~~i~~Il~~l~--l~~~~i~~~s~~~g~Gi~~Lk~~l 157 (447)
T COG3276 82 AADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEA--RIEQKIKQILADLS--LANAKIFKTSAKTGRGIEELKNEL 157 (447)
T ss_pred ECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH--HHHHHHHHHHHHCC--CCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 47557664368899999861987328999622344678--89999999986502--000323011012578779999999
Q ss_pred HCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCCCCCCC--CCCCEECCCCCCCCCCCCCCCCC
Q ss_conf 002333342000348666416777886377620000000000000000025665--55420001466532210000122
Q gi|254780787|r 541 LLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILVVGDQ--WGKIRALFNDRGQGISKAVPSMP 617 (884)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~ 617 (884)
.-..+ ........|...++..++.-+|.|+|.|+.+..|.++.||-+.+... ..+||++-. +++....+..++=
T Consensus 158 ~~L~~--~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~~k~v~VRsIq~-~d~d~~~a~AG~R 233 (447)
T COG3276 158 IDLLE--EIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPINKEVRVRSIQA-HDVDVEEAKAGQR 233 (447)
T ss_pred HHHHH--HHHHCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEEECCEEEEECCCCEEEEEEEEE-CCCCHHHCCCCCE
T ss_conf 87520--0554047865999755799513317998678643588788899905897689986320-6864555012251
No 51
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.97 E-value=1.6e-30 Score=226.82 Aligned_cols=125 Identities=29% Similarity=0.422 Sum_probs=110.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHH--------HHH-------------H-CCCCCCEECCCEEEEECCCCEEEEEECCCHHH
Q ss_conf 3898623685044677788642--------221-------------0-01231000121499951784388885166157
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKA--------DVA-------------K-GEIGGITQHIGAYQVAYQGKNITFLDTPGHAA 442 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~--------~~~-------------~-~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~ 442 (884)
-|+|+||+|+|||||.++|.-. .|. . .-..|||.+-.+.++.|.+.+|+|||||||.+
T Consensus 12 niaIi~H~dAGKTTLtE~lL~~~GaI~~~G~V~~~~~~~~~~sD~~~~E~~RgiSI~ssv~~~e~~~~~iNliDTPGh~D 91 (526)
T PRK00741 12 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHED 91 (526)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCHHHHHCCCEEECCEEEEEECCEEEEEEECCCCHH
T ss_conf 79999378989899999999746752448466314678864678858899759648615177867898999990989467
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCC
Q ss_conf 8999866642068059999836674023577789899709941561233124433200022100001
Q gi|254780787|r 443 FYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKH 509 (884)
Q Consensus 443 f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~ 509 (884)
|+.-..|++.++|.||+|||+-+||++||+-.|..|+.+++|.|++||||||.++++.....++.+.
T Consensus 92 F~~e~~raL~a~D~Av~Vida~~GVe~qTe~~w~~~~~~~iP~i~FINKmDR~~ad~~~~l~ei~~~ 158 (526)
T PRK00741 92 FSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEV 158 (526)
T ss_pred HHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 7899999998737599999777552333689999988639988999965676789878988778887
No 52
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.97 E-value=1.3e-30 Score=227.40 Aligned_cols=242 Identities=24% Similarity=0.293 Sum_probs=159.1
Q ss_pred EEEEEECCCCCHHHHHHHHHH-HHHHH---------------CCCCCCEECCCEEE----EECCCCEEEEEECCCHHHHH
Q ss_conf 389862368504467778864-22210---------------01231000121499----95178438888516615789
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRK-ADVAK---------------GEIGGITQHIGAYQ----VAYQGKNITFLDTPGHAAFY 444 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~-~~~~~---------------~e~ggitq~iga~~----~~~~~~~~~~iDtPGh~~f~ 444 (884)
-|||+||||||||||.|+|.. +.+.. .-..|||.+-.+.. +.+....|+|||||||.+|+
T Consensus 22 NI~IiaHvdaGKTTLtE~lL~~sg~i~~~~~~~~t~~D~~~~E~eRgITI~sa~~sl~~~~~~~~~~INlIDTPGh~DF~ 101 (730)
T PRK07560 22 NIGIVAHIDHGKTTLSDNLLAGAGMISEELAGKQLALDYDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDFG 101 (730)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHCCCCEEECCEEEEEEECCCCEEEEEECCCCCCHHH
T ss_conf 89999379989899999999964998653479864178859999729857521102898756983789998196973059
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCC--------------
Q ss_conf 998666420680599998366740235777898997099415612331244332000221000013--------------
Q gi|254780787|r 445 EMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHD-------------- 510 (884)
Q Consensus 445 ~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~-------------- 510 (884)
....|.+.++|.||+|||+.+||++||.-.|+++...++|.|++||||||...+......++....
T Consensus 102 ~Ev~~aLrv~DgAvvVvdav~GV~~qTe~v~rqa~~~~~p~ilfINKmDR~~~~l~~~~~~~~~~l~~~i~~~~~~i~~~ 181 (730)
T PRK07560 102 GDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALEERVRPVLFINKVDRLIKELKLTPQEMQQRLLKIIKDVNKLIEGY 181 (730)
T ss_pred HHHHHHHHHHCEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999998858789999789887731899999998779997999868662355537798999888988999999999863
Q ss_pred ---CCCCCCC---------------CCCEEEEEEECCCCCCC----------------------CCCCCHHCCCC-----
Q ss_conf ---2000123---------------47403631100247741----------------------12210000233-----
Q gi|254780787|r 511 ---VFVESMG---------------GDILDVEISAKNNLNLD----------------------KLLDAILLQAE----- 545 (884)
Q Consensus 511 ---~~~~~~~---------------~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~----- 545 (884)
.+...|. ++.+.++.....+.... .||+++..+.-
T Consensus 182 ~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~l~~~~pl~~~lld~i~~~lPsP~ea 261 (730)
T PRK07560 182 APEEFKEKWKVDVADGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKVKELAEKAPLHEVVLDMVIKHLPNPLEA 261 (730)
T ss_pred CCHHHCCCEEECCCCCCHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHCCCHHHH
T ss_conf 71553755052443342054423427523469998718777899999853128887653847999999999868995772
Q ss_pred ------------C------CCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCCCCCC--CCCCCEECCC--
Q ss_conf ------------3------34200034866641677788637762000000000000000002566--5554200014--
Q gi|254780787|r 546 ------------M------LDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILVVGD--QWGKIRALFN-- 603 (884)
Q Consensus 546 ------------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~v~~~~~-- 603 (884)
. ..+..++..|..++++-...|...|.++.+.|+.|+|+.|+.+..-. ..-+|..++.
T Consensus 262 ~~~ri~~~~~g~~~~~~~~~~~~~d~~~pl~~~vfK~~~dp~~g~is~~RV~sG~L~~g~~v~n~~~~~~eki~~l~~~~ 341 (730)
T PRK07560 262 QKYRIPKIWKGDLNSEIGKAMLNCDPNGPLVMMVTKIIVDPHAGEVATGRVFSGTIRRGQEVYLVGAKKKARVQQVGIYM 341 (730)
T ss_pred CCCCCCCCCCCCCCCHHHEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEEECCEECCCCEEEECCCCCCEEEEEEEEEE
T ss_conf 21035644578876510101220489987145775455669886489999843466479875404777412521578720
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -66532210000122211112347
Q gi|254780787|r 604 -DRGQGISKAVPSMPIEVLGLQGM 626 (884)
Q Consensus 604 -~~~~~~~~~~~~~~~~~~~~~~~ 626 (884)
..-..+..+.++.++-+.|+...
T Consensus 342 g~~~~~v~~~~aGdI~ai~gL~~~ 365 (730)
T PRK07560 342 GPEREEVDEIPAGNIAAVTGLKDA 365 (730)
T ss_pred CCCEEEEEEECCCCEEEEECCCCC
T ss_conf 696578105167878999566554
No 53
>KOG0460 consensus
Probab=99.97 E-value=4.7e-31 Score=230.41 Aligned_cols=208 Identities=29% Similarity=0.319 Sum_probs=150.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHH----------------HCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHH
Q ss_conf 898623685044677788642221----------------0012310001214999517843888851661578999866
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVA----------------KGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRAR 449 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~----------------~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~r 449 (884)
|.-+||||||||||--+|.+.--. ..-|.|||++....++.+....+..+|||||++|..++..
T Consensus 57 VGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIKNMIt 136 (449)
T KOG0460 57 VGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIKNMIT 136 (449)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 03300335772008999999997516501054766533826653561676435664224430014789963889987532
Q ss_pred HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEECCCCCCCCCC--CCHHHHHHHCCCCCCCCCCCCCEEEEEE
Q ss_conf 64206805999983667402357778989970994-15612331244332--0002210000132000123474036311
Q gi|254780787|r 450 GARVTDIAVLVLAADEEIMPQAIESINHAKAADVS-IIVAINKIDKLGAD--PQKVRMSLLKHDVFVESMGGDILDVEIS 526 (884)
Q Consensus 450 g~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p-~iva~nk~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (884)
|++..|.|||||+|.||.||||.|||.||++.+++ ++|.+||.|..... .+-+..+..+.+..-.-.|.+.+.+.-|
T Consensus 137 GaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GS 216 (449)
T KOG0460 137 GAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGS 216 (449)
T ss_pred CCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECC
T ss_conf 73236734999974789884068888889872876499997120246888999999999999999729998878766320
Q ss_pred EC---CCCCCCCCCCCHHC-CCCCCCCCCCC----CCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCC-CCCC
Q ss_conf 00---24774112210000-23333420003----486664167778863776200000000000000000-2566
Q gi|254780787|r 527 AK---NNLNLDKLLDAILL-QAEMLDLKTSI----NRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNIL-VVGD 593 (884)
Q Consensus 527 ~~---~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~ 593 (884)
|+ .|.+-+-++++|.- ....+.....| ..|....+-+.+-..|+|+|.+..+..|+++.|+.+ +.|.
T Consensus 217 AL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~ 292 (449)
T KOG0460 217 ALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGH 292 (449)
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHEEEECCCCEEEEEEEEECCCCCCCEEEEECC
T ss_conf 1222227884205799999999875158985213577740430024661588349987785022146887898506
No 54
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.97 E-value=1.3e-30 Score=227.25 Aligned_cols=124 Identities=30% Similarity=0.427 Sum_probs=111.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCC------------------CCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHH
Q ss_conf 898623685044677788642221001------------------23100012149995178438888516615789998
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGE------------------IGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMR 447 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e------------------~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r 447 (884)
|+|+||+|||||||+++|....-+-.. ..|||++.+..++.|.+.+++|||||||..|+..+
T Consensus 2 iai~gH~~~GKTtL~e~lL~~~g~i~r~G~v~~g~t~~D~~~eE~~r~isi~~~~~~~~~~~~~~n~iDtPG~~dF~~e~ 81 (237)
T cd04168 2 IGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAEV 81 (237)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCHHHHCCCEECCCCCCCCHHHHHHHCCEEEEEEEEEEECCEEEEEEECCCCHHHHHHH
T ss_conf 89993899899999999999657122266330683037854998984870310589999899879998898846566689
Q ss_pred HHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCC
Q ss_conf 66642068059999836674023577789899709941561233124433200022100001
Q gi|254780787|r 448 ARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKH 509 (884)
Q Consensus 448 ~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~ 509 (884)
.+++.++|.||||||+.+|+++||..+|.+++.+++|.||++||||+..++...+..++.+.
T Consensus 82 ~~al~~~D~av~Vv~a~~Gv~~~t~~~~~~~~~~~~P~iifiNKmDre~adf~~~l~~i~~~ 143 (237)
T cd04168 82 ERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEK 143 (237)
T ss_pred HHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 88976348169999658882234499999999859985998624457899999999999999
No 55
>TIGR00483 EF-1_alpha translation elongation factor EF-1, subunit alpha; InterPro: IPR004539 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding , . EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). This entry represents EF1A proteins found primarily in eukaryotic (eEF1A) and archaeal (aEF1A) organisms, these proteins being more closely related to one another than to EF1A (or EF-Tu) found in bacteria (IPR004541 from INTERPRO). More information about these proteins can be found at Protein of the Month: Elongation Factors . ; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005737 cytoplasm.
Probab=99.97 E-value=1e-30 Score=228.01 Aligned_cols=233 Identities=27% Similarity=0.356 Sum_probs=173.7
Q ss_pred EEEEEECCCCCHHHHHHHHH---------------HHHHHHCC----------------CCCCEECCCEEEEECCCCEEE
Q ss_conf 38986236850446777886---------------42221001----------------231000121499951784388
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIR---------------KADVAKGE----------------IGGITQHIGAYQVAYQGKNIT 433 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r---------------~~~~~~~e----------------~ggitq~iga~~~~~~~~~~~ 433 (884)
-|.++|||||||+||.-.|. +-.--.|- -.|||..|....|.++.+.+|
T Consensus 9 Nv~~IGHVD~GKST~~G~Lly~~G~I~~~~~eK~~kEa~e~GK~~F~fa~V~D~Lk~ERERGvTID~A~~KFeT~KY~~T 88 (445)
T TIGR00483 9 NVAFIGHVDHGKSTLVGRLLYKAGAIDEQLLEKLKKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHKKFETDKYEVT 88 (445)
T ss_pred EEEEEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEE
T ss_conf 48998254088502667777542896589999998757551873036765431100000156224334454178851699
Q ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEEECCCC-------CCHHHHHHHHHHHHCCCC-EEEECCCCCCCCCCCCHHHHH
Q ss_conf 885166157899986664206805999983667-------402357778989970994-156123312443320002210
Q gi|254780787|r 434 FLDTPGHAAFYEMRARGARVTDIAVLVLAADEE-------IMPQAIESINHAKAADVS-IIVAINKIDKLGADPQKVRMS 505 (884)
Q Consensus 434 ~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g-------~~~qt~e~~~~~~~~~~p-~iva~nk~d~~~~~~~~~~~~ 505 (884)
+||+|||.+|..++..|+|.+|-||||||..+| ++|||.||+-|++-.++. +||||||||....+..+....
T Consensus 89 ivDcPGHRDFiKNMITGaSQADaAvLv~~v~~~~~~ag~~~~pQTrEH~~La~TLGi~QliVAiNKMD~V~yd~~~f~~~ 168 (445)
T TIGR00483 89 IVDCPGHRDFIKNMITGASQADAAVLVVAVDDGEFEAGISVQPQTREHVFLARTLGINQLIVAINKMDSVNYDEEEFEAL 168 (445)
T ss_pred EEECCCCCHHHHHCCCCCCCCCEEEEEEECCCCCCCCCEEECCCCHHHHHHHHHHCCEEEEEEECCCCCEECCHHHHHHH
T ss_conf 98469870134311266751242799995254410240121786057788877503204533310246100277899999
Q ss_pred ---HHC-CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHCCC-----------------CCCCC----CCCCCCCCCCE
Q ss_conf ---000-132000123474036311002477411221000023-----------------33342----00034866641
Q gi|254780787|r 506 ---LLK-HDVFVESMGGDILDVEISAKNNLNLDKLLDAILLQA-----------------EMLDL----KTSINRKAEGI 560 (884)
Q Consensus 506 ---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~----~~~~~~~~~~~ 560 (884)
+.. ++...--....+.|+|+|+..|.|+-.--+-..-|. +.++. .-..+.|.+..
T Consensus 169 ~~~~s~~l~K~vGY~p~~v~FiP~s~~~GDN~~~~s~~~PWYkgwe~e~~agvv~G~TL~EA~D~~~~P~kp~d~PLRiP 248 (445)
T TIGR00483 169 KKEVSEQLLKKVGYKPDEVPFIPISAFEGDNVIKKSENTPWYKGWEKETKAGVVKGKTLLEALDALEPPEKPVDKPLRIP 248 (445)
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCEEECCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99999989987488756123254035467613433038885255220002302218458988731047864346773055
Q ss_pred EEEEEEECCCCCCHHHHHHCCHHHCCCCCCC--CCCCCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf 6777886377620000000000000000025--665554200014665322100001222
Q gi|254780787|r 561 VVEGKLDRGRGPVVTVLVQKGTLSKGNILVV--GDQWGKIRALFNDRGQGISKAVPSMPI 618 (884)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~ 618 (884)
+=+.+...|.|+|=-+.|..|.|+.|+.++. ....+-|+++-..+ ..+..+.|+.-+
T Consensus 249 iQDVY~I~GvGTVPVGRVEtGvl~~G~~V~F~PAGVsgEVKSiEMHH-E~i~~a~PGDNi 307 (445)
T TIGR00483 249 IQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMHH-EQIEQAEPGDNI 307 (445)
T ss_pred CCCEEEECCEEECCCCCEECCEEECCCEEEECCCCCCCCEEEEEECC-CCCCCCCCCCCC
T ss_conf 30035753366223460202426448878963788431213676113-436677778741
No 56
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.97 E-value=4.2e-30 Score=223.85 Aligned_cols=155 Identities=25% Similarity=0.319 Sum_probs=114.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHH--------------CCCCCCEECCCEE------------------------EEEC
Q ss_conf 8986236850446777886422210--------------0123100012149------------------------9951
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAK--------------GEIGGITQHIGAY------------------------QVAY 427 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~--------------~e~ggitq~iga~------------------------~~~~ 427 (884)
|+|+||||||||||+..|.+...-+ ....|+|..|+.. .+..
T Consensus 2 v~v~GhVD~GKSTL~G~Lt~g~lDdGrg~ar~~~~rh~hE~~~G~Tssi~~~~lgf~~~g~~~~~~~~~~~~~~~~~~~~ 81 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICEK 81 (224)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEECCCCCCCCCCCEEEECC
T ss_conf 89994858848899999856774222106777877618999726544115655401014532021347654422012136
Q ss_pred CCCEEEEEECCCHHHHHHHHHHH--HHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC-CHHHH
Q ss_conf 78438888516615789998666--4206805999983667402357778989970994156123312443320-00221
Q gi|254780787|r 428 QGKNITFLDTPGHAAFYEMRARG--ARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADP-QKVRM 504 (884)
Q Consensus 428 ~~~~~~~iDtPGh~~f~~~r~rg--~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~-~~~~~ 504 (884)
..+.+||||+|||+.|.+.+.+| ++..|+++|||+|++|+++||.||+.++...++|++|++||||+...+. .....
T Consensus 82 ~~k~it~iD~pGH~~y~kt~i~G~~~~~~d~~~LvV~A~~G~~~~T~ehl~l~~~l~ip~~vvitKiDl~~~~~l~~~~~ 161 (224)
T cd04165 82 SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETLK 161 (224)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 78679999788739999999987635568989999317889779999999999983999899998977689899999999
Q ss_pred HHHCC---------------------CCCCCCCCCCCEEEEEEECCCCCCCCCCCCH
Q ss_conf 00001---------------------3200012347403631100247741122100
Q gi|254780787|r 505 SLLKH---------------------DVFVESMGGDILDVEISAKNNLNLDKLLDAI 540 (884)
Q Consensus 505 ~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (884)
++... ....-.+...++.+.+|+++|+|++.|...+
T Consensus 162 ~i~~~lk~p~~~k~p~~v~~~~d~~~~a~~~~~~~ivPIf~vS~VtG~Gi~~L~~fL 218 (224)
T cd04165 162 DLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFL 218 (224)
T ss_pred HHHHHHCCCCCCCCCEECCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 999997044755687021685889999864886777467997658987999999999
No 57
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.95 E-value=3.8e-27 Score=203.69 Aligned_cols=125 Identities=32% Similarity=0.394 Sum_probs=112.4
Q ss_pred EEEEECCCCCHHHHHHHHHHH--------HHHHC------C----CCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHH
Q ss_conf 898623685044677788642--------22100------1----23100012149995178438888516615789998
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKA--------DVAKG------E----IGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMR 447 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~--------~~~~~------e----~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r 447 (884)
|+|+||+|+|||||.++|... .|.+| + ..|||.+.+..++.|.+.+++|||||||.+|+...
T Consensus 2 iai~gH~gaGKTtL~EalL~~ag~i~r~G~v~~g~tv~D~~~eE~~R~isi~~~~~~~~w~~~~inliDTPG~~DF~~e~ 81 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIEV 81 (270)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHCCCEEECCEEEEEECCEEEEEEECCCCHHHHHHH
T ss_conf 89996899998899999998668735581553897556684889876870733668999899899998696967889999
Q ss_pred HHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCC
Q ss_conf 666420680599998366740235777898997099415612331244332000221000013
Q gi|254780787|r 448 ARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHD 510 (884)
Q Consensus 448 ~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~ 510 (884)
.+++.++|.||+|||+.+||++||.-.|..++++++|.|++|||||+..++...+..++.+..
T Consensus 82 ~~aL~~~D~AviVv~a~~GVe~~T~~~w~~~~~~~lP~i~fINKmDre~ad~~~~l~~i~~~l 144 (270)
T cd01886 82 ERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKL 144 (270)
T ss_pred HHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 999877555999984676442636999988998499989999887877887166899999985
No 58
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.95 E-value=4.5e-27 Score=203.17 Aligned_cols=125 Identities=27% Similarity=0.390 Sum_probs=112.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHH--------HHHCC----------CCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHH
Q ss_conf 8986236850446777886422--------21001----------23100012149995178438888516615789998
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKAD--------VAKGE----------IGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMR 447 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~--------~~~~e----------~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r 447 (884)
|+|+||+|.|||||..+|.... |-+|- ..|||.+-.+.++.|.+.+++|||||||.+|+...
T Consensus 2 i~iigH~~aGKTtL~E~lL~~~g~i~~~G~V~~g~t~~D~~~~E~~RgiSi~s~~~~~~w~~~~inliDTPG~~DF~~e~ 81 (268)
T cd04170 2 IALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGET 81 (268)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCEEEEEECCEEEEEEECCCCHHHHHHH
T ss_conf 89990899998999999999669966576545897357787889867967513557888899799998698975799999
Q ss_pred HHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCC
Q ss_conf 666420680599998366740235777898997099415612331244332000221000013
Q gi|254780787|r 448 ARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHD 510 (884)
Q Consensus 448 ~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~ 510 (884)
.|++.++|.||+|||+.+||++||.-.|+.++++++|.|++|||||+.+++......++.+.+
T Consensus 82 ~~aL~v~D~Av~Vida~~GVe~~T~~~w~~~~~~~iP~i~fINKmDr~~ad~~~~l~~i~~~l 144 (268)
T cd04170 82 RAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAF 144 (268)
T ss_pred HHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 998404783999941875476879999999998599989999787878996477999999986
No 59
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.94 E-value=5.9e-27 Score=202.34 Aligned_cols=125 Identities=30% Similarity=0.445 Sum_probs=111.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHHH--------H----------HH----CCCCCCEECCCEEEEECCCCEEEEEECCCHHH
Q ss_conf 38986236850446777886422--------2----------10----01231000121499951784388885166157
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKAD--------V----------AK----GEIGGITQHIGAYQVAYQGKNITFLDTPGHAA 442 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~--------~----------~~----~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~ 442 (884)
-|+|+||+|+|||||.++|.... | -+ .-..|||.+.+...+.|.+.+++|||||||.+
T Consensus 4 niai~gH~gaGKTtL~EalL~~~G~i~r~G~V~~~~~~g~t~~D~~~eE~~R~iSi~~~~~~~~w~~~kinliDTPG~~D 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCEEECCEEEEEECCEEEEEEECCCCHH
T ss_conf 79998479999899999999866863338546303688860468879998659448636378878998999997969778
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCC
Q ss_conf 8999866642068059999836674023577789899709941561233124433200022100001
Q gi|254780787|r 443 FYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKH 509 (884)
Q Consensus 443 f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~ 509 (884)
|.....+++.++|.||+|||+.+||++||.-.|.+++++++|.|++|||||+..++...+..++.+.
T Consensus 84 F~~e~~~al~v~D~AviVv~a~~GVe~~T~~~w~~a~~~~iP~iifINKmDr~~adf~~~l~~i~~~ 150 (267)
T cd04169 84 FSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIEEE 150 (267)
T ss_pred HHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 9999999998864547995256665355899999999729997999853456789878999999998
No 60
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.93 E-value=4.2e-26 Score=196.52 Aligned_cols=84 Identities=52% Similarity=1.030 Sum_probs=82.6
Q ss_pred EEEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHCCHHHHHHHCCCEEEEEEECCEEEEECC
Q ss_conf 78999788733898707899985217846980799669989982262576644600668727976699972841100589
Q gi|254780787|r 791 GNAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRFKDEVSEVHAGQDCGMAFEKYDNIQAGD 870 (884)
Q Consensus 791 g~a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~~~~~~~gD 870 (884)
|.|.|+++|.++|.+.||||+|++|.|++++.+||+|++++||+|+|.||||+|++|+||++|+||||.|++|+||++||
T Consensus 1 G~a~V~~vF~~~k~~~IAGc~V~~G~i~~~~~vrv~R~~~~i~~G~I~sLk~~K~~V~eV~~G~ECGi~l~~~~d~~~GD 80 (84)
T cd03692 1 GEAEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFNDIKVGD 80 (84)
T ss_pred CEEEEEEEEECCCCEEEEEEEEEECEEECCCEEEEEECCEEEEEEEEHHHHHCCCCCCEECCCCEEEEEECCCCCCCCCC
T ss_conf 97999999998996089899998099972995999989999998366656003435578768818679957847677798
Q ss_pred EEEE
Q ss_conf 8999
Q gi|254780787|r 871 MIEC 874 (884)
Q Consensus 871 ~i~~ 874 (884)
+|||
T Consensus 81 ~iea 84 (84)
T cd03692 81 IIEA 84 (84)
T ss_pred EEEC
T ss_conf 9809
No 61
>TIGR00485 EF-Tu translation elongation factor Tu; InterPro: IPR004541 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding , . EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). This entry represents EF1A (or EF-Tu) proteins found primarily in bacteria, mitochondria and chloroplasts. Eukaryotic and archaeal EF1A (IPR004539 from INTERPRO) are excluded from this entry. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors . More information about these proteins can be found at Protein of the Month: Elongation Factors .; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005622 intracellular.
Probab=99.93 E-value=5.6e-26 Score=195.65 Aligned_cols=208 Identities=29% Similarity=0.343 Sum_probs=156.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHH----------------HHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHH
Q ss_conf 8986236850446777886422----------------210012310001214999517843888851661578999866
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKAD----------------VAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRAR 449 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~----------------~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~r 449 (884)
|.-+||||||||||.-+|...- .....+.|||..-...++.+....+..+|||||++|...+..
T Consensus 15 ~GtiGhvdhGkttl~aa~~~~l~~~~~~~~~~y~~id~aPee~~rGiti~~~~vey~~~~rhyahvdCPGhadyvknmit 94 (394)
T TIGR00485 15 IGTIGHVDHGKTTLTAAITTVLAKEGKAAAKKYDEIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMIT 94 (394)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEEEEEEECCCCCCEEEECCCCHHHHHHHHHH
T ss_conf 30121001550578999999987510035676776523721133451565335542146751576318862678887641
Q ss_pred HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEECCCCCCCCCCC--CHHHHHHHCCCCCCCCCCCCCEEEEEE
Q ss_conf 64206805999983667402357778989970994-156123312443320--002210000132000123474036311
Q gi|254780787|r 450 GARVTDIAVLVLAADEEIMPQAIESINHAKAADVS-IIVAINKIDKLGADP--QKVRMSLLKHDVFVESMGGDILDVEIS 526 (884)
Q Consensus 450 g~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p-~iva~nk~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (884)
|+...|.+||||++.||.||||.|||.|++..++| +||.|||+|...... +-+..++.+.+....-.|.+.+.+.-|
T Consensus 95 GaaqmdGailvv~~~d~~mPqt~ehill~~~vGvP~~vvflnk~d~~~~~el~~lv~~e~~~ll~~~~f~G~~~Pi~~Gs 174 (394)
T TIGR00485 95 GAAQMDGAILVVSAADGPMPQTREHILLARQVGVPKIVVFLNKVDMVDDEELLELVELEVRELLSEYDFPGDDVPIVRGS 174 (394)
T ss_pred HHHHCCCEEEEEECCCCCCCCCHHHEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECH
T ss_conf 01111760799952788887411210010026876578764023322427899999999999987407898652256114
Q ss_pred ECCCCCCCCCCC-CHH-CCCCCCCCCCCC----CCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCCC-CCC
Q ss_conf 002477411221-000-023333420003----4866641677788637762000000000000000002-566
Q gi|254780787|r 527 AKNNLNLDKLLD-AIL-LQAEMLDLKTSI----NRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILV-VGD 593 (884)
Q Consensus 527 ~~~~~~~~~~~~-~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~ 593 (884)
|+....-+..+. .+. +....+.....| ..|....+-+.+...|+|++++..+..|.++.|+.+- .|.
T Consensus 175 al~al~~~~~~~~~~~~l~~~vd~~i~~P~r~~~~~fl~~~ed~~~i~GrGtv~tGr~e~G~~~v~~~v~~~G~ 248 (394)
T TIGR00485 175 ALKALEGDAEWEEKILELMEAVDEYIPTPEREVDKPFLLPIEDVFSITGRGTVVTGRVERGVVKVGEEVEIVGL 248 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEEEEEEECCCEEEEEEEEECEEEECCEEEEEEE
T ss_conf 56542003679999999999998650675113144114553104675046347850243044764464799874
No 62
>KOG0461 consensus
Probab=99.93 E-value=1.6e-25 Score=192.59 Aligned_cols=216 Identities=25% Similarity=0.333 Sum_probs=164.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHH--------HHHHCCCCCCEECCCEEEEECC---------CCEEEEEECCCHHHHHHHH
Q ss_conf 3898623685044677788642--------2210012310001214999517---------8438888516615789998
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKA--------DVAKGEIGGITQHIGAYQVAYQ---------GKNITFLDTPGHAAFYEMR 447 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~--------~~~~~e~ggitq~iga~~~~~~---------~~~~~~iDtPGh~~f~~~r 447 (884)
-+.||||||.|||||-.+|-.+ +-++.| .|||-.+|...+..+ ...+||+|+|||++.....
T Consensus 9 N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~e-RgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRti 87 (522)
T KOG0461 9 NLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTE-RGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRTI 87 (522)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCHHHHCCCCCCCC-CCEEEEECCEEEECCCCCCCCCCCCCEEEEEECCCHHHHHHHH
T ss_conf 443574025764899999986314033224875310-4626741220441357233787664126997179708899999
Q ss_pred HHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHH----HHHCCCCCCCCCCCCCEEE
Q ss_conf 666420680599998366740235777898997099415612331244332000221----0000132000123474036
Q gi|254780787|r 448 ARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRM----SLLKHDVFVESMGGDILDV 523 (884)
Q Consensus 448 ~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 523 (884)
..|+.+.|++|||||+..|.++||-||+.+.....-..||++||||.+-.+...-.- ..+...+..-.++|+.+.+
T Consensus 88 iggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~ 167 (522)
T KOG0461 88 IGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPIV 167 (522)
T ss_pred HCCHHHHEEEEEEEEHHCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 71012001346788610176665214544376644626999950122653024567899999999778745768888526
Q ss_pred EEEECCCCCCC----CCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCCC--CCCCCCC
Q ss_conf 31100247741----12210000233334200034866641677788637762000000000000000002--5665554
Q gi|254780787|r 524 EISAKNNLNLD----KLLDAILLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILV--VGDQWGK 597 (884)
Q Consensus 524 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~ 597 (884)
++|+..|.+.+ +|.+++ ....-+.+-++..|....+...+..+|.|+|.|+.+..|.++.++.+- +-....+
T Consensus 168 ~vsa~~G~~~~~~i~eL~e~l--~s~if~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e~rk 245 (522)
T KOG0461 168 EVSAADGYFKEEMIQELKEAL--ESRIFEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALNEKRK 245 (522)
T ss_pred EEECCCCCCCHHHHHHHHHHH--HHHHCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEECCCEEEECCCCHHHH
T ss_conf 764378754066789999999--976247776888875898642578626715886347876896286885043331444
Q ss_pred CEECCC
Q ss_conf 200014
Q gi|254780787|r 598 IRALFN 603 (884)
Q Consensus 598 v~~~~~ 603 (884)
|+.|-.
T Consensus 246 VKslqm 251 (522)
T KOG0461 246 VKSLQM 251 (522)
T ss_pred HHHHHH
T ss_conf 446998
No 63
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=7.9e-26 Score=194.62 Aligned_cols=202 Identities=27% Similarity=0.388 Sum_probs=151.2
Q ss_pred EEEEEECCCCCHHHHHHHHHH--HHHHHCC-CCCCEECCCEEEEE----------------CC----------CCEEEEE
Q ss_conf 389862368504467778864--2221001-23100012149995----------------17----------8438888
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRK--ADVAKGE-IGGITQHIGAYQVA----------------YQ----------GKNITFL 435 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~--~~~~~~e-~ggitq~iga~~~~----------------~~----------~~~~~~i 435 (884)
.+...||||||||||.-+|.+ |.--+.| ..|||+.+|-...+ .. -+++.|+
T Consensus 12 NIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VSfV 91 (415)
T COG5257 12 NIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVSFV 91 (415)
T ss_pred EEEEEEECCCCHHHHEEHHHCEEEECHHHHHHCCCEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
T ss_conf 76234201466241100331334302068875684798402557457577778876623478777789973079999974
Q ss_pred ECCCHHHHHHHHHHHHHCCCCEEEEEECCCCC-CHHHHHHHHHHHHCCCC-EEEECCCCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf 51661578999866642068059999836674-02357778989970994-15612331244332000221000013200
Q gi|254780787|r 436 DTPGHAAFYEMRARGARVTDIAVLVLAADEEI-MPQAIESINHAKAADVS-IIVAINKIDKLGADPQKVRMSLLKHDVFV 513 (884)
Q Consensus 436 DtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~-~~qt~e~~~~~~~~~~p-~iva~nk~d~~~~~~~~~~~~~~~~~~~~ 513 (884)
|.|||+.+.+.+-.|+.+.|.|+|||+|++-. +|||.||+--+.-.++. +||+-||||+........ ...+...|.
T Consensus 92 DaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE--~y~qIk~Fv 169 (415)
T COG5257 92 DAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALE--NYEQIKEFV 169 (415)
T ss_pred ECCCHHHHHHHHHCCHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCEECHHHHHH--HHHHHHHHH
T ss_conf 079669999988602344215389995389898973187788776626533999952301115999888--799999986
Q ss_pred C-CCCCCCEEEEEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEE--------ECCCCCCHHHHHHCCHHH
Q ss_conf 0-1234740363110024774112210000233334200034866641677788--------637762000000000000
Q gi|254780787|r 514 E-SMGGDILDVEISAKNNLNLDKLLDAILLQAEMLDLKTSINRKAEGIVVEGKL--------DRGRGPVVTVLVQKGTLS 584 (884)
Q Consensus 514 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~ 584 (884)
. .|..+.+.+|+||..+.|+|-|++++..+- .....++..+...++..++- +...|.|.-..+..|.++
T Consensus 170 kGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I--ptP~rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~ 247 (415)
T COG5257 170 KGTVAENAPIIPISAQHKANIDALIEAIEKYI--PTPERDLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQGVLR 247 (415)
T ss_pred CCCCCCCCCEEEEHHHHCCCHHHHHHHHHHHC--CCCCCCCCCCCEEEEEEECCCCCCCCCHHHCCCCEECCEEEEEEEE
T ss_conf 26334799544325643058799999999868--9986678999669998640358998997772474322202553685
Q ss_pred CCCCCC
Q ss_conf 000002
Q gi|254780787|r 585 KGNILV 590 (884)
Q Consensus 585 ~~~~~~ 590 (884)
.||-+-
T Consensus 248 vGDEIE 253 (415)
T COG5257 248 VGDEIE 253 (415)
T ss_pred CCCEEE
T ss_conf 387578
No 64
>pfam11987 IF-2 Translation-initiation factor 2. IF-2 is a translation initiator in each of the three main phylogenetic domains (Eukaryotes, Bacteria and Archaea). IF2 interacts with formylmethionine-tRNA, GTP, IF1, IF3 and both ribosomal subunits. Through these interactions, IF2 promotes the binding of the initiator tRNA to the A site in the smaller ribosomal subunit and catalyses the hydrolysis of GTP following initiation-complex formation.
Probab=99.92 E-value=1.7e-25 Score=192.40 Aligned_cols=98 Identities=53% Similarity=0.821 Sum_probs=94.7
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 12302334443331023123455542115765356578851268575778876432598799963899989999999839
Q gi|254780787|r 678 SSKMKEFPVIIKGDVQGSVEAIVDSLGALKNSEVCLSIVHSSVGAINETDVSLAKASGAVIFGFNVRASSQARVLAIKDE 757 (884)
Q Consensus 678 ~~~~~~~~~~ik~d~~gs~eal~~~l~~~~~~ev~i~v~~~~VG~v~~~DV~~A~~~~a~Il~FnVkv~~~a~~~A~~~g 757 (884)
..+.+++++++|+|++||+||+...|..+.+++++++|++++|||||++||++|++++|+|+||||+++++++++|++.|
T Consensus 12 ~~~~k~~~iIiKaD~~GSlEAi~~~l~~l~~~~v~i~ii~~~vG~vtesDv~~A~~~~a~IigFnV~~~~~~~~~A~~~~ 91 (109)
T pfam11987 12 EGEVKELNLILKADVQGSLEAIKDSLEKLSTDEVKVNIIHAGVGAITESDVMLASASNAIIIGFNVRPDAKARKLAEQEG 91 (109)
T ss_pred HCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCC
T ss_conf 08864875999936734699999999837998389999862567887889999885298799970789978999999849
Q ss_pred CEEEEEEHHHHHHHHHHH
Q ss_conf 859975026789999999
Q gi|254780787|r 758 IKILYYKIIYDLLDSIKD 775 (884)
Q Consensus 758 V~I~~~~IIY~L~d~~~~ 775 (884)
|+|++|||||||+|++++
T Consensus 92 V~I~~~~IIY~Lid~v~~ 109 (109)
T pfam11987 92 VDIRYYSIIYDLIDDVKA 109 (109)
T ss_pred CEEEEECHHHHHHHHHCC
T ss_conf 859995715502567609
No 65
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.3e-24 Score=186.22 Aligned_cols=233 Identities=20% Similarity=0.256 Sum_probs=159.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHH------------H---CCC------------------CCCEECCCEEEEECCCCEE
Q ss_conf 898623685044677788642221------------0---012------------------3100012149995178438
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVA------------K---GEI------------------GGITQHIGAYQVAYQGKNI 432 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~------------~---~e~------------------ggitq~iga~~~~~~~~~~ 432 (884)
++-.||||+||+||+..|.+-.-+ + +.. -|||+.+.--+|.+++.++
T Consensus 9 fiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~KRkF 88 (431)
T COG2895 9 FITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEKRKF 88 (431)
T ss_pred EEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCEE
T ss_conf 89753536860232446553101105779998752131236778754525633256888864965998764103666308
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEECCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf 8885166157899986664206805999983667402357778989970994-156123312443320002210000132
Q gi|254780787|r 433 TFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVS-IIVAINKIDKLGADPQKVRMSLLKHDV 511 (884)
Q Consensus 433 ~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p-~iva~nk~d~~~~~~~~~~~~~~~~~~ 511 (884)
-+.|||||+-|+.++..|+|-||+|||+|||-+|+..||.-|--++.-.++. +|+|+||||+.+...+....-..++..
T Consensus 89 IiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~ 168 (431)
T COG2895 89 IIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAIVADYLA 168 (431)
T ss_pred EEECCCCHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98459967987642223623003799999642216777677899999728767999974101235678999999999999
Q ss_pred CCCCCCC-CCEEEEEEECCCCCCCCCCCCHHCCCCC-----CC-CC---CCCCCCCCCEEEE-EEEEC-CCCCCHHHHHH
Q ss_conf 0001234-7403631100247741122100002333-----34-20---0034866641677-78863-77620000000
Q gi|254780787|r 512 FVESMGG-DILDVEISAKNNLNLDKLLDAILLQAEM-----LD-LK---TSINRKAEGIVVE-GKLDR-GRGPVVTVLVQ 579 (884)
Q Consensus 512 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~---~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~ 579 (884)
+.+.++. ...++|+||..|+|+-.--.....+.-. ++ +. .....+..-.|-. ...+. .+|.- +.+.
T Consensus 169 fa~~L~~~~~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~v~i~~~~~~~~~RfPVQ~V~Rp~~dfRGya--Gtia 246 (431)
T COG2895 169 FAAQLGLKDVRFIPISALLGDNVVSKSENMPWYKGPTLLEILETVEIADDRSAKAFRFPVQYVNRPNLDFRGYA--GTIA 246 (431)
T ss_pred HHHHCCCCCCEEEECHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEECEEEECCCCCCCCCCC--EEEE
T ss_conf 99976998524774323048753346567886468509999741223455436650102288617897621003--0440
Q ss_pred CCHHHCCCCCCCCC--CCCCCEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00000000002566--5554200014665322100001222111
Q gi|254780787|r 580 KGTLSKGNILVVGD--QWGKIRALFNDRGQGISKAVPSMPIEVL 621 (884)
Q Consensus 580 ~g~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 621 (884)
.|.+++||.++.-. ...+|+.+... ......+.+++.|.+.
T Consensus 247 sG~v~~Gd~vvvlPsG~~s~V~~Ivt~-dg~~~~A~aG~aVtl~ 289 (431)
T COG2895 247 SGSVKVGDEVVVLPSGKTSRVKRIVTF-DGELAQASAGEAVTLV 289 (431)
T ss_pred CCCEECCCEEEECCCCCEEEEEEEECC-CCCHHHCCCCCEEEEE
T ss_conf 351405974899458970357999646-8716541688428999
No 66
>KOG0458 consensus
Probab=99.92 E-value=9.7e-25 Score=187.18 Aligned_cols=216 Identities=23% Similarity=0.262 Sum_probs=160.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHH-------------------------------HHHHCCCCCCEECCCEEEEECCCCEEE
Q ss_conf 3898623685044677788642-------------------------------221001231000121499951784388
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKA-------------------------------DVAKGEIGGITQHIGAYQVAYQGKNIT 433 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~-------------------------------~~~~~e~ggitq~iga~~~~~~~~~~~ 433 (884)
-+.|+||||.||.|||..|..- +.....+.|+|-.++.++|..+...+|
T Consensus 179 ~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~~~t 258 (603)
T KOG0458 179 NLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSKIVT 258 (603)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCEEEEEEEEEEECCCEEEE
T ss_conf 89997023454111023788873686578899999998752875302567743631245436367754689846861699
Q ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCC-------CHHHHHHHHHHHHCCCC-EEEECCCCCCCCCCCCHHHHH
Q ss_conf 8851661578999866642068059999836674-------02357778989970994-156123312443320002210
Q gi|254780787|r 434 FLDTPGHAAFYEMRARGARVTDIAVLVLAADEEI-------MPQAIESINHAKAADVS-IIVAINKIDKLGADPQKVRMS 505 (884)
Q Consensus 434 ~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~-------~~qt~e~~~~~~~~~~p-~iva~nk~d~~~~~~~~~~~~ 505 (884)
+||+|||-.|+..+..|++.+|.||||||+..|. --||.||..+++..|+- .|||+||+|... |.+..-.+
T Consensus 259 liDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~-Wsq~RF~e 337 (603)
T KOG0458 259 LIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVS-WSQDRFEE 337 (603)
T ss_pred EECCCCCCCCCHHHHCCCCCCCEEEEEEECCCCHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCC-CCHHHHHH
T ss_conf 86078742355234336221566899998775433313487986589999998749525888863010127-53889999
Q ss_pred ----HHCCCCCCCCCC-CCCEEEEEEECCCCCCCCC---------------CCCHHCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf ----000132000123-4740363110024774112---------------21000023333420003486664167778
Q gi|254780787|r 506 ----LLKHDVFVESMG-GDILDVEISAKNNLNLDKL---------------LDAILLQAEMLDLKTSINRKAEGIVVEGK 565 (884)
Q Consensus 506 ----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (884)
+..++...--|- -++.++|+|+.+|+|+..- |..+.. ....+.. ...|....+.+.+
T Consensus 338 Ik~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p~~~--~~kPl~ltIsdi~ 414 (603)
T KOG0458 338 IKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIPERP--IDKPLRLTISDIY 414 (603)
T ss_pred HHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH-CCCCCCC--CCCCEEEEHHHEE
T ss_conf 999899999985285047765695546567762123341355665338808888861-3688876--6677487830054
Q ss_pred EECCCCCCHHHHHHCCHHHCCCCCCCCC--CCCCCEECCCC
Q ss_conf 8637762000000000000000002566--55542000146
Q gi|254780787|r 566 LDRGRGPVVTVLVQKGTLSKGNILVVGD--QWGKIRALFND 604 (884)
Q Consensus 566 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~v~~~~~~ 604 (884)
.....+....+.+..|.+..|+.+..+. ..+.|+.+...
T Consensus 415 ~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~ 455 (603)
T KOG0458 415 PLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSN 455 (603)
T ss_pred ECCCCEEEEEEEEECCCCCCCCEEEEECCCCEEEEEEEECC
T ss_conf 35887068999972142135998998357530799855438
No 67
>KOG0465 consensus
Probab=99.92 E-value=1.2e-24 Score=186.67 Aligned_cols=122 Identities=34% Similarity=0.433 Sum_probs=106.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHH--------HHHHC----------CCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHH
Q ss_conf 3898623685044677788642--------22100----------12310001214999517843888851661578999
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKA--------DVAKG----------EIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEM 446 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~--------~~~~~----------e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~ 446 (884)
-|-|+.|+|.|||||-..+.-. +|-.+ .-.|||.+.+|+++.|...+|++||||||.+|+-.
T Consensus 41 NIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~E 120 (721)
T KOG0465 41 NIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFE 120 (721)
T ss_pred CCCEEEEEECCCCEEEHEEEEECCEEEECCCCCCCCEEEEHHHHHHHCCCEEEECEEEEEECCCEEEEECCCCCEEEEEE
T ss_conf 03169998269851102001302201002320267604642777865384464121566404520678548972157977
Q ss_pred HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHH
Q ss_conf 866642068059999836674023577789899709941561233124433200022100
Q gi|254780787|r 447 RARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSL 506 (884)
Q Consensus 447 r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~ 506 (884)
..|.+.+.|.||||+++-.||++||+-.++.++++++|+|..+||+||.++++-+..+++
T Consensus 121 VeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i 180 (721)
T KOG0465 121 VERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQI 180 (721)
T ss_pred EHHHHHHCCCEEEEEECCCCEEHHHHHHHHHHHHCCCCEEEEEEHHHHCCCCHHHHHHHH
T ss_conf 200252056728999703651113568988887618975999861664479748899999
No 68
>TIGR00484 EF-G translation elongation factor G; InterPro: IPR004540 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF-G is a large, five-domain GTPase that promotes the directional movement of mRNA and tRNAs on the ribosome in a GTP-dependent manner. Unlike other GTPases, but by analogy to the myosin motor, EF-G performs its function of powering translocation in the GDP-bound form; that is, in a kinetically stable ribosome-EF-G(GDP) complex formed by GTP hydrolysis on the ribosome. The complex undergoes an extensive structural rearrangement, in particular affecting the small ribosomal subunit, which leads to mRNA-tRNA movement. Domain 4, which extends from the 'body' of the EF-G molecule much like a lever arm, appears to be essential for the structural transition to take place. In a hypothetical model, GTP hydrolysis induces a conformational change in the G domain of EF-G, which affects the interactions with neighbouring domains within EF-G. The resulting rearrangement of the domains relative to each other generates conformational strain in the ribosome to which EF-G is fixed. Because of structural features of the tRNA-ribosome complex, this conformational strain results in directional tRNA-mRNA movement. The functional parallels between EF-G and motor proteins suggest that EF-G differs from classical G-proteins in that it functions as a force-generating mechanochemical device rather than a conformational switch . Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. Escherichia coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis sp. (strain PCC 6803) has a few proteins more closely related to EF-G than to any other characterised protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. More information about these proteins can be found at Protein of the Month: Elongation Factors . ; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005622 intracellular.
Probab=99.92 E-value=3.9e-26 Score=196.77 Aligned_cols=248 Identities=29% Similarity=0.322 Sum_probs=188.7
Q ss_pred EEEEEECCCCCHHHHHHHHHH-H---------HHHHCCC----------CCCEECCCEEEEECCC------CEEEEEECC
Q ss_conf 389862368504467778864-2---------2210012----------3100012149995178------438888516
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRK-A---------DVAKGEI----------GGITQHIGAYQVAYQG------KNITFLDTP 438 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~-~---------~~~~~e~----------ggitq~iga~~~~~~~------~~~~~iDtP 438 (884)
-+.|+.|+|.||||+-.+|.- | +-.+|.| .|||..-.||.+.|.+ ..+++||||
T Consensus 12 NiGI~AHIDaGKTT~~ERILFy~g~~HkIgE~~g~dG~a~MDwME~E~ERGITItSAAT~~~Wk~~~~~~~~~~N~IDTP 91 (705)
T TIGR00484 12 NIGISAHIDAGKTTTTERILFYTGRIHKIGEVHGKDGAATMDWMEQEKERGITITSAATTVEWKGMAKQYDHRINIIDTP 91 (705)
T ss_pred CCCEEEEECCCCCCCHHEEEECCCCCCCEEECCCCCCCEECCHHHHCCCCCEEEECHHCCHHHHHHHHCCCCEEEEEECC
T ss_conf 54327863388732010100013750100000167885112312300358714210011010210100014037887378
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCC-------
Q ss_conf 6157899986664206805999983667402357778989970994156123312443320002210000132-------
Q gi|254780787|r 439 GHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDV------- 511 (884)
Q Consensus 439 Gh~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~------- 511 (884)
||-+||-...|.+.+.|.||+|.|+.-||+|||+-.|+.+..+.||-|+.+||+|+.+++...+..++...+.
T Consensus 92 GHVDFT~EVERSlRVLDGAv~V~~a~~GV~pQ~~TVwRQa~~Y~VPRi~FVNK~Dk~GAnf~~~~~~~~~rL~~~~~~~q 171 (705)
T TIGR00484 92 GHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANKYEVPRIVFVNKMDKTGANFLRVVNQLKSRLGANAVPIQ 171 (705)
T ss_pred CCEEEEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 94125788520122564566533302686641156776543268862899715564578788999999987467734664
Q ss_pred ---CCCC-CCCC--------------------------------------------------------------------
Q ss_conf ---0001-2347--------------------------------------------------------------------
Q gi|254780787|r 512 ---FVES-MGGD-------------------------------------------------------------------- 519 (884)
Q Consensus 512 ---~~~~-~~~~-------------------------------------------------------------------- 519 (884)
..++ +.|-
T Consensus 172 lpiGaE~~f~GviDLv~~ka~~~~~~~~g~~~~~~~iP~~~~~~~~~~~~~l~e~~a~~~~~LM~~yl~G~e~~~~~ik~ 251 (705)
T TIGR00484 172 LPIGAEDKFIGVIDLVEMKAYFFEEGDKGTKIDEKEIPSDLLEQAKELRENLVEAVAELDEELMEKYLEGEELTIEEIKN 251 (705)
T ss_pred ECCCCCCCCCEEEEEEEEEEEEECCCCCCCEEHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHH
T ss_conf 11256656310455430156775067766400122264789999999999999988420078899850896536899988
Q ss_pred -----------CEEEEEEECCCCCCCCCCCCHHCC------------------CCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf -----------403631100247741122100002------------------333342000348666416777886377
Q gi|254780787|r 520 -----------ILDVEISAKNNLNLDKLLDAILLQ------------------AEMLDLKTSINRKAEGIVVEGKLDRGR 570 (884)
Q Consensus 520 -----------~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (884)
.+.+.-||...-|+..||+++.-+ .....++..-..|..++.+-..-|...
T Consensus 252 ~~r~g~l~~~~~pv~~GSafKNKGv~~lLDAV~~yLP~P~dv~~~~~~~~~~~~~e~~~~~sd~~~f~~LAFK~~tdpfv 331 (705)
T TIGR00484 252 AIRKGVLNLELIPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTNEEEIELKASDEEPFVALAFKVATDPFV 331 (705)
T ss_pred HHHCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCC
T ss_conf 87513112468888750330002588899999974789743154302355667761367515676512234564058731
Q ss_pred CCCHHHHHHCCHHHCCCCCCCCCC-----CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 620000000000000000025665-----554200014665322100001222111123475555404
Q gi|254780787|r 571 GPVVTVLVQKGTLSKGNILVVGDQ-----WGKIRALFNDRGQGISKAVPSMPIEVLGLQGMPMAGDKF 633 (884)
Q Consensus 571 ~~~~~~~~~~g~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (884)
|...-+.|+.|.|..|+.+.--.. .+|+..|-...-..+.....+.++-+.|+.... .|+.+
T Consensus 332 G~LTf~RvY~G~l~~G~~v~Ns~~~k~ervgRl~~MHa~~re~I~~~~aGdI~A~~Glkd~~-TGdTl 398 (705)
T TIGR00484 332 GQLTFVRVYSGVLKSGSYVKNSRKSKKERVGRLVKMHANKREEIKEVRAGDIAAAIGLKDTT-TGDTL 398 (705)
T ss_pred CEEEEEEEEEEEECCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCEECC-CCCCC
T ss_conf 12789999761512797776020000144323331003772100121356368873130025-67632
No 69
>KOG0467 consensus
Probab=99.92 E-value=5e-25 Score=189.16 Aligned_cols=182 Identities=22% Similarity=0.262 Sum_probs=131.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHH----------------HCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHH
Q ss_conf 3898623685044677788642221----------------001231000121499951784388885166157899986
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADVA----------------KGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRA 448 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~~----------------~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~ 448 (884)
.+|++.|||||||||.|.|-.+|-. +.-..|||-.-++...-...+.++|||+|||-+|+....
T Consensus 11 n~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sevs 90 (887)
T KOG0467 11 NICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVS 90 (887)
T ss_pred EEEEEEEECCCCCCHHHHHHHHCCEECHHHCCCEEECCCCCHHHHHCEEEECCCCCCCCCCEEEEEECCCCCCCHHHHHH
T ss_conf 89999996488532577787506674153356066210462566616244313111013765899855898645065532
Q ss_pred HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 66420680599998366740235777898997099415612331244332000221000013200012347403631100
Q gi|254780787|r 449 RGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAK 528 (884)
Q Consensus 449 rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (884)
..+.+||+|+++||+.+||.+||+-.+..+-..+...|.+||||||+-....--..+...+....-+ .+.++
T Consensus 91 sas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~--------~vn~~ 162 (887)
T KOG0467 91 SASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEAYEHLLRVIE--------QVNGV 162 (887)
T ss_pred HHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCHHHHHHHHHHHHH--------HHHHH
T ss_conf 6665047718999600254553899999999716745999731666788871696999999999999--------86668
Q ss_pred CCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHH
Q ss_conf 24774112210000233334200034866641677788637762000
Q gi|254780787|r 529 NNLNLDKLLDAILLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVT 575 (884)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (884)
+|++...+...-..+.+.. -......|..+.++.+....++|.-..
T Consensus 163 i~~~~~~~v~l~~~~~~i~-d~~~~F~p~kgNVif~~A~~~~~f~~~ 208 (887)
T KOG0467 163 IGQFLGGIVELDDNWENIE-DEEITFGPEDGNVIFASALDGWGFGIE 208 (887)
T ss_pred HHHHHCCHHHCCCHHHHHH-HCCEEECCCCCCEEEEEECCCCCCCHH
T ss_conf 8876411111021032210-100043677884899871015620199
No 70
>TIGR02034 CysN sulfate adenylyltransferase, large subunit; InterPro: IPR011779 Metabolic assimilation of sulphur from inorganic sulphate, requires sulphate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulphates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through sulphation of sulphate with ATP by sulphate adenylyltransferase (ATP sulphurylase) to produce 5'-phosphosulphate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulphate (PAPS) . In Escherichia coli, ATP sulphurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulphur-containing amino acids . Homologous to this E. coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulphurase and APS kinase activity, yet are involved in Nod factor sulphation, and sulphation of other macromolecules . With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulphurase) and cysC (APS kinase) , .; GO: 0016772 transferase activity transferring phosphorus-containing groups.
Probab=99.90 E-value=9.3e-24 Score=180.48 Aligned_cols=247 Identities=21% Similarity=0.261 Sum_probs=166.2
Q ss_pred EEEEECCCCCHHHHHHHHHHH-H--------------HHHCCCC------------------CCEECCCEEEEECCCCEE
Q ss_conf 898623685044677788642-2--------------2100123------------------100012149995178438
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKA-D--------------VAKGEIG------------------GITQHIGAYQVAYQGKNI 432 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~-~--------------~~~~e~g------------------gitq~iga~~~~~~~~~~ 432 (884)
.|=.|=||=||+||+-.|.+- . --.|.-| |||+...==||.+++++|
T Consensus 3 flTCGSVDDGKSTLIGRLLhDtK~i~eDQL~~l~~DS~~~G~~G~~iD~ALLVDGL~AEREQGITIDVAYRYFsT~KRkF 82 (411)
T TIGR02034 3 FLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGEEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRKF 82 (411)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCE
T ss_conf 35205445873102222255552168999999885225534788765234133067744324861213313257787617
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEECCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf 8885166157899986664206805999983667402357778989970994-156123312443320002210000132
Q gi|254780787|r 433 TFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVS-IIVAINKIDKLGADPQKVRMSLLKHDV 511 (884)
Q Consensus 433 ~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p-~iva~nk~d~~~~~~~~~~~~~~~~~~ 511 (884)
-+=||||||-+|.+++-|||-||+|||+|||-+||..||.-|-.++--.|+. +|+|+||||+.+.....-.+-..++..
T Consensus 83 IvADTPGHEQYTRNMATGAST~dlAvlLvDAR~Gvl~QTRRHs~i~sLLGIrh~VlAVNKmDLvdyd~~vF~~I~~~y~~ 162 (411)
T TIGR02034 83 IVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYLA 162 (411)
T ss_pred EEECCCCCCCCCCCCCHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 88408559415443000013112466554210213456779999988604538999997011147657889999999999
Q ss_pred CCCCC-C-CCCEEEEEEECCCCCCC-CCCCCHHCC------------CCCC-CCCCCCCCCCCCEEEEEEEECCCCCCHH
Q ss_conf 00012-3-47403631100247741-122100002------------3333-4200034866641677788637762000
Q gi|254780787|r 512 FVESM-G-GDILDVEISAKNNLNLD-KLLDAILLQ------------AEML-DLKTSINRKAEGIVVEGKLDRGRGPVVT 575 (884)
Q Consensus 512 ~~~~~-~-~~~~~~~~~~~~~~~~~-~~~~~~~~~------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (884)
+...+ + ..+.++|+||+.|+|+- .-=....-| .... .....+.+.---+|...-..-.||.-.|
T Consensus 163 fa~~L~g~~~~~~iP~SAL~GdNv~y~~S~~MpWY~GPtLle~LEtv~~~~G~~~~~~lRfPVQyVnRPn~tdFRGyaGt 242 (411)
T TIGR02034 163 FAEQLAGVRDVTFIPLSALKGDNVVYSRSESMPWYSGPTLLEHLETVEVERGDAQDLPLRFPVQYVNRPNLTDFRGYAGT 242 (411)
T ss_pred HHHHCCCCCEEEEEEEECCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHH
T ss_conf 99863898347998733136874022566788875788065300400003674224787200456526888666522231
Q ss_pred HHHHCCHHHCCCCCCCCC--CCCCCEECCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCEEEE
Q ss_conf 000000000000002566--55542000146653221000012221111-2347555540431
Q gi|254780787|r 576 VLVQKGTLSKGNILVVGD--QWGKIRALFNDRGQGISKAVPSMPIEVLG-LQGMPMAGDKFGV 635 (884)
Q Consensus 576 ~~~~~g~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 635 (884)
+-.|.+.+||.++.-. ...+|..+.+ .+..+..|.+++.|-+.= -......|+.+..
T Consensus 243 --~asG~v~~Gd~v~vlPSG~~srV~rIVt-~dg~l~~A~aG~AvTL~L~~eiDisRGDll~~ 302 (411)
T TIGR02034 243 --IASGSVKVGDEVVVLPSGRSSRVARIVT-FDGDLEQAVAGQAVTLVLDDEIDISRGDLLAA 302 (411)
T ss_pred --EECCEECCCCEEEEEECCCEEEEEEEEE-CCCCHHHCCCCCEEEEEEECEEEEECCHHHHC
T ss_conf --0225534598899962796443558870-46533006687538998600043320022122
No 71
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.88 E-value=1.8e-22 Score=171.64 Aligned_cols=209 Identities=27% Similarity=0.333 Sum_probs=153.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHH-------------HHHCCC-CCCEECCC--EEEEE---------------------C
Q ss_conf 38986236850446777886422-------------210012-31000121--49995---------------------1
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKAD-------------VAKGEI-GGITQHIG--AYQVA---------------------Y 427 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~-------------~~~~e~-ggitq~ig--a~~~~---------------------~ 427 (884)
.|.+||||||||+||+.+|-.-. ++.-|. .|.|-.|. .|-|. .
T Consensus 119 ~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv~~ 198 (527)
T COG5258 119 LVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVVKR 198 (527)
T ss_pred EEEEECCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEECCCCCHHHHHHHHHH
T ss_conf 99974244578635987898457778884021134541677761653222699997249926760585207777676652
Q ss_pred CCCEEEEEECCCHHHHHHHHHHH--HHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCC-CCHHHH
Q ss_conf 78438888516615789998666--420680599998366740235777898997099415612331244332-000221
Q gi|254780787|r 428 QGKNITFLDTPGHAAFYEMRARG--ARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGAD-PQKVRM 504 (884)
Q Consensus 428 ~~~~~~~iDtPGh~~f~~~r~rg--~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~-~~~~~~ 504 (884)
....+.|+||-|||.|...-.|| ++-.|..+|||+||+|++--|.||+.++-..+.|.||+++|+|+.... ...+.+
T Consensus 199 aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~ddr~~~v~~ 278 (527)
T COG5258 199 ADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPDDRFQGVVE 278 (527)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 03089998537862789988888732666627999981677303306765656461697799999525682788999999
Q ss_pred HHHCCC-------------------CCCCCCCC-CCEEEEEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 000013-------------------20001234-7403631100247741122100002333342000348666416777
Q gi|254780787|r 505 SLLKHD-------------------VFVESMGG-DILDVEISAKNNLNLDKLLDAILLQAEMLDLKTSINRKAEGIVVEG 564 (884)
Q Consensus 505 ~~~~~~-------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (884)
++...+ ...-..+. -++.+.+|+++|+|++.|.+..++.-.. ..+....|...++.+.
T Consensus 279 ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~Lp~r--r~~~d~g~flmYId~i 356 (527)
T COG5258 279 EISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLLPKR--RRWDDEGPFLMYIDKI 356 (527)
T ss_pred HHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCCCEEEEEEEE
T ss_conf 99999997434653550553267765433237825779998224575389999999749850--0247789728998756
Q ss_pred EEECCCCCCHHHHHHCCHHHCCCCCCCCCCC
Q ss_conf 8863776200000000000000000256655
Q gi|254780787|r 565 KLDRGRGPVVTVLVQKGTLSKGNILVVGDQW 595 (884)
Q Consensus 565 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 595 (884)
+.-.|.|++....++.|.+..||.+..|...
T Consensus 357 YsVtGVGtVvsGsV~~G~l~~gd~vllGP~~ 387 (527)
T COG5258 357 YSVTGVGTVVSGSVKSGILHVGDTVLLGPFK 387 (527)
T ss_pred EEEEEEEEEEEEEEEEEEECCCCEEEECCCC
T ss_conf 7774257898613776166059879974578
No 72
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.85 E-value=1.6e-20 Score=158.25 Aligned_cols=158 Identities=26% Similarity=0.347 Sum_probs=120.4
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHH-HCCCCCCEECCCEEEEECCCCEEEEEECCC----------HHHHHHHHH-HH
Q ss_conf 303898623685044677788642221-001231000121499951784388885166----------157899986-66
Q gi|254780787|r 383 PPVVTIMGHVDHGKTSLLDAIRKADVA-KGEIGGITQHIGAYQVAYQGKNITFLDTPG----------HAAFYEMRA-RG 450 (884)
Q Consensus 383 ~pvv~v~ghvd~GKt~lld~~r~~~~~-~~e~ggitq~iga~~~~~~~~~~~~iDtPG----------h~~f~~~r~-rg 450 (884)
++-|+++|+.++|||||+-+|.+.++. -+..-|.|++.--..+...+..++|+|||| ++.|+.++. +.
T Consensus 2 ~~~V~ivG~pN~GKSTL~N~l~g~~~~~vs~~pgtTr~~~~~~~~~~~~~~~~vDtpGi~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCEEECCEEEEEECCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 98999998999989999999838984443499991573328999999988999857884213442106889999999999
Q ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 42068059999836674023577789899709941561233124433200022100001320001234740363110024
Q gi|254780787|r 451 ARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNN 530 (884)
Q Consensus 451 ~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (884)
..-||++++|||+.+|++.|....+..+...+.|+|+++||+|+......... .+.......-........+++||++|
T Consensus 82 i~~~dvil~viDa~~~~~~~d~~i~~~l~~~~~p~iiv~NK~Dli~~~~~~~~-~~~~~~~~~~~~~~~~~ii~iSA~~g 160 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMK-EFKKEIRRKLPFLDYAPIVFISALTG 160 (174)
T ss_pred HHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECEECCCCCHHHHH-HHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 98428658997589899889999999999859986999856752676477899-99999998734168992899974479
Q ss_pred CCCCCCCCCHH
Q ss_conf 77411221000
Q gi|254780787|r 531 LNLDKLLDAIL 541 (884)
Q Consensus 531 ~~~~~~~~~~~ 541 (884)
.|+++|++.+.
T Consensus 161 ~Gi~~L~~~I~ 171 (174)
T cd01895 161 QGVDKLFDAID 171 (174)
T ss_pred CCHHHHHHHHH
T ss_conf 89999999999
No 73
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.84 E-value=2.9e-20 Score=156.55 Aligned_cols=156 Identities=24% Similarity=0.275 Sum_probs=117.2
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHH-CCCCCCEECCCEEEEECCCCEEEEEECCCH----HHHHH----HHHHHH
Q ss_conf 553038986236850446777886422210-012310001214999517843888851661----57899----986664
Q gi|254780787|r 381 IRPPVVTIMGHVDHGKTSLLDAIRKADVAK-GEIGGITQHIGAYQVAYQGKNITFLDTPGH----AAFYE----MRARGA 451 (884)
Q Consensus 381 ~R~pvv~v~ghvd~GKt~lld~~r~~~~~~-~e~ggitq~iga~~~~~~~~~~~~iDtPGh----~~f~~----~r~rg~ 451 (884)
.|++.|+++|+-++|||||+.+|.+.+++. +..-|.|.+.-...+..++..+.|+||||- ..+.. .-.+..
T Consensus 1 ~~~~~V~ivG~pN~GKSsL~N~L~~~~~a~vs~~~gtTr~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~l 80 (168)
T cd04163 1 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEECCCEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99868999999999999999999589703323889826344236898499789999589866514567789999999865
Q ss_pred HCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 20680599998366740235777898997099415612331244332000221000013200012347403631100247
Q gi|254780787|r 452 RVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNL 531 (884)
Q Consensus 452 ~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (884)
.-||++++|||+.+|+.++..+.+..++..+.|+|+++||+|+..... .+...........+....+++||++|+
T Consensus 81 ~~~D~il~vvD~~~~~~~~d~~i~~~l~~~~~~~iivlNK~Dl~~~~~-----~~~~~~~~~~~~~~~~~vi~iSA~~g~ 155 (168)
T cd04163 81 KDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKE-----DLLPLLEKLKELGPFAEIFPISALKGE 155 (168)
T ss_pred HCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECEEECCCHH-----HHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 136558999978989866779999999980998599997887047877-----899999999961899968999777896
Q ss_pred CCCCCCCCHH
Q ss_conf 7411221000
Q gi|254780787|r 532 NLDKLLDAIL 541 (884)
Q Consensus 532 ~~~~~~~~~~ 541 (884)
|+++|++.+.
T Consensus 156 Gid~L~~~i~ 165 (168)
T cd04163 156 NVDELLEEIV 165 (168)
T ss_pred CHHHHHHHHH
T ss_conf 9999999999
No 74
>KOG0464 consensus
Probab=99.83 E-value=1.7e-21 Score=165.06 Aligned_cols=223 Identities=26% Similarity=0.330 Sum_probs=154.0
Q ss_pred EEEEEECCCCCHHHHHHHHHH--------HHHHHC----------CCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHH
Q ss_conf 389862368504467778864--------222100----------12310001214999517843888851661578999
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRK--------ADVAKG----------EIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEM 446 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~--------~~~~~~----------e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~ 446 (884)
-+.||.|||.||||....|.- .+|.+| ...|||.|-.|..+.|.++++++||||||-+|.-.
T Consensus 39 nigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~le 118 (753)
T KOG0464 39 NIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLE 118 (753)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCEEEEECCCCCCEEEEE
T ss_conf 13069985178740678899774022104656788537788888886483665404421235616765248884037987
Q ss_pred HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCC-----------------
Q ss_conf 866642068059999836674023577789899709941561233124433200022100001-----------------
Q gi|254780787|r 447 RARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKH----------------- 509 (884)
Q Consensus 447 r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~----------------- 509 (884)
..|...+.|.++.|+|+--||+|||.-.|..+.++++|-+..|||||+..++.+.....+.+.
T Consensus 119 verclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~l~lpi~eak~ 198 (753)
T KOG0464 119 VERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALKLQLPIGEAKG 198 (753)
T ss_pred HHHHHHHHCCEEEEEECCCCCCCCEEEEEHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 89888775073899845677664122100030135784533023466655546668899998738741789701553245
Q ss_pred --------------------------------------------------------------CCCCCCCCCC--------
Q ss_conf --------------------------------------------------------------3200012347--------
Q gi|254780787|r 510 --------------------------------------------------------------DVFVESMGGD-------- 519 (884)
Q Consensus 510 --------------------------------------------------------------~~~~~~~~~~-------- 519 (884)
..+.+++.++
T Consensus 199 fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d~i~a~e 278 (753)
T KOG0464 199 FNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFDKIDAEE 278 (753)
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 44027999887434577788754444578642348978999999999999998861127789999987505533467899
Q ss_pred --------------CEEEEEEECCCCCCCCCCCCHHCCCCCCCCCCC-----CCCCCCCEEEEEEEECCCCCCHHHHHHC
Q ss_conf --------------403631100247741122100002333342000-----3486664167778863776200000000
Q gi|254780787|r 520 --------------ILDVEISAKNNLNLDKLLDAILLQAEMLDLKTS-----INRKAEGIVVEGKLDRGRGPVVTVLVQK 580 (884)
Q Consensus 520 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (884)
.+..+-||++..|+..||+++..+.-..+.+.. .+....+..+-...|+.+|...-..++.
T Consensus 279 lksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeernyeflqwykddlcalafkvlhdkqrg~l~fmriys 358 (753)
T KOG0464 279 LKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEERNYEFLQWYKDDLCALAFKVLHDKQRGPLSFMRIYS 358 (753)
T ss_pred HHHHHHHHHHHHHHCCEEHHHHHCCCCCCCHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC
T ss_conf 99999998666320122200344036765123344322688354022777652013777766653001348626899861
Q ss_pred CHHHCCCCC--CCCCCCCCCEECCCCCCC
Q ss_conf 000000000--256655542000146653
Q gi|254780787|r 581 GTLSKGNIL--VVGDQWGKIRALFNDRGQ 607 (884)
Q Consensus 581 g~~~~~~~~--~~~~~~~~v~~~~~~~~~ 607 (884)
|++.....+ ..|+..-++..++.....
T Consensus 359 gsi~~~~ai~nin~~~se~~~kl~~pfad 387 (753)
T KOG0464 359 GSIHNNLAIFNINGMCSEGILKLFLPFAD 387 (753)
T ss_pred CCCCCCEEEEECCCCCCCCHHHHHCCCHH
T ss_conf 54467613662266533111765355415
No 75
>TIGR00490 aEF-2 translation elongation factor aEF-2; InterPro: IPR004543 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position , . This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents archaeal EF2 proteins (also known as aEF2), which are more similar to eukaryotic EF2 than to bacterial EF2 (or EFG), both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. More information about these proteins can be found at Protein of the Month: Elongation Factors .; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005737 cytoplasm.
Probab=99.82 E-value=3.5e-20 Score=155.98 Aligned_cols=242 Identities=24% Similarity=0.278 Sum_probs=166.1
Q ss_pred EEEEEECCCCCHHHHHHHHHH-HHHHHCC---------------CCCCEECCCEE----EEECCCCEEEEEECCCHHHHH
Q ss_conf 389862368504467778864-2221001---------------23100012149----995178438888516615789
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRK-ADVAKGE---------------IGGITQHIGAY----QVAYQGKNITFLDTPGHAAFY 444 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~-~~~~~~e---------------~ggitq~iga~----~~~~~~~~~~~iDtPGh~~f~ 444 (884)
-+.|..|+|||||||.|.|.. ....+.| ..|||..-... .+....+.+++||||||-+|.
T Consensus 21 niGi~ahidhGkttlsdnllaGaGmis~elaG~q~~ldfde~e~~rGiti~aanvsmvh~yeG~~ylinlidtPGhvdfG 100 (724)
T TIGR00490 21 NIGIVAHIDHGKTTLSDNLLAGAGMISEELAGEQLYLDFDEQEQERGITIDAANVSMVHEYEGNEYLINLIDTPGHVDFG 100 (724)
T ss_pred HEEEEEEECCCCCHHHHHHHHCCCHHHHHHCCCCEEECCCHHHHHCCCEEEEEEEEEEEEECCCCEEEEEECCCCCCCCC
T ss_conf 00037863177511223444213323454056410002441352377267641156765314750243331488621056
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHC----------------
Q ss_conf 9986664206805999983667402357778989970994156123312443320002210000----------------
Q gi|254780787|r 445 EMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLK---------------- 508 (884)
Q Consensus 445 ~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~---------------- 508 (884)
--..|.....|.+|.||+|.+|+||||.-.+..+.+-++..+..+||+||+-....-...++.+
T Consensus 101 Gdvtramra~dG~~vvv~aveG~mPqtetvlrqal~e~v~Pvlf~nkvdrli~el~l~~~~lq~r~~k~i~~~n~li~~m 180 (724)
T TIGR00490 101 GDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPEELQERLIKIIAEVNKLIKKM 180 (724)
T ss_pred CHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 24888877647638999502565761578999998731870677234788888624688899999999999999999741
Q ss_pred ----------------CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHC------------------------------
Q ss_conf ----------------1320001234740363110024774112210000------------------------------
Q gi|254780787|r 509 ----------------HDVFVESMGGDILDVEISAKNNLNLDKLLDAILL------------------------------ 542 (884)
Q Consensus 509 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 542 (884)
...+...+..+...+|....+|.+..+.+..+.-
T Consensus 181 ~P~~~~~~W~~~v~~Gs~afGsa~~nWa~~vP~~~~~Gi~f~~~~~~~~e~~~~ela~k~Pl~~v~l~mv~~hlPsP~e~ 260 (724)
T TIGR00490 181 APEEFKDKWKVRVEDGSVAFGSAYYNWAISVPIMKKTGITFKDIYKYIKEDKQKELAKKAPLHQVVLDMVIKHLPSPAEA 260 (724)
T ss_pred CCCCHHCCCEEEECCCCCHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHH
T ss_conf 76100000047651564101122210002044300137759999998630114557640658899999999744896224
Q ss_pred --------C-------CCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCC--CCCCCCCCCEECCC--
Q ss_conf --------2-------3333420003486664167778863776200000000000000000--25665554200014--
Q gi|254780787|r 543 --------Q-------AEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNIL--VVGDQWGKIRALFN-- 603 (884)
Q Consensus 543 --------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~v~~~~~-- 603 (884)
| .-...+.++|..|....+-...+++..|.++.+.++.|.++.|+-+ +-.....++.....
T Consensus 261 q~~r~~~~W~Gd~~se~G~am~~~dP~GP~a~~~t~~~~~~~aG~~~~~r~y~G~i~~G~e~y~v~~~~k~~~q~v~~ym 340 (724)
T TIGR00490 261 QKYRIPVIWKGDLNSEAGKAMLNCDPEGPLAVMITKIVVDKHAGEVAVGRLYSGAIKKGSEVYLVDRKAKARIQQVGVYM 340 (724)
T ss_pred HHHHHHHHEECCCCCHHCCHHCCCCCCCCEEEEEEEEEEECCCCCEEEEEEECCEECCCCEEEEECCHHHCCEEEEEEEE
T ss_conf 44010010104654000542100489986144556556603668167755531500368668986430002112466776
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -66532210000122211112347
Q gi|254780787|r 604 -DRGQGISKAVPSMPIEVLGLQGM 626 (884)
Q Consensus 604 -~~~~~~~~~~~~~~~~~~~~~~~ 626 (884)
+.-..+.....+-.+-+.|+...
T Consensus 341 GP~r~~~d~~~aGni~a~~G~k~a 364 (724)
T TIGR00490 341 GPERVEVDEIPAGNIVAVVGLKEA 364 (724)
T ss_pred CCEECCCCCCCCCCEEEEEECCCC
T ss_conf 670201242267756887403211
No 76
>KOG0459 consensus
Probab=99.82 E-value=2.6e-20 Score=156.87 Aligned_cols=236 Identities=27% Similarity=0.300 Sum_probs=162.7
Q ss_pred CCCEEEEEECCCCCHHHHHH----------------HHHHHHHHHCCC---------------CCCEECCCEEEEECCCC
Q ss_conf 53038986236850446777----------------886422210012---------------31000121499951784
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLD----------------AIRKADVAKGEI---------------GGITQHIGAYQVAYQGK 430 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld----------------~~r~~~~~~~e~---------------ggitq~iga~~~~~~~~ 430 (884)
+.--+.++||||.||.|+=. +.|...-+..|. -|-|.-.|.-+|.++..
T Consensus 78 ~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~~ 157 (501)
T KOG0459 78 EHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETENK 157 (501)
T ss_pred CCCEEEEEEEEECCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHCCCEEEEEEEEEEECCE
T ss_conf 87448999999644012687367898654377899999998761333224899973760121026505412578871343
Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCC-----CC--HHHHHHHHHHHHCCCC-EEEECCCCCCCCCCCCHH
Q ss_conf 388885166157899986664206805999983667-----40--2357778989970994-156123312443320002
Q gi|254780787|r 431 NITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEE-----IM--PQAIESINHAKAADVS-IIVAINKIDKLGADPQKV 502 (884)
Q Consensus 431 ~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g-----~~--~qt~e~~~~~~~~~~p-~iva~nk~d~~~~~~~~~ 502 (884)
++|++|+|||.+|...+..|++.+|+++|||+|..| ++ -||.|+..|++..++. .||.+||||-+..+....
T Consensus 158 ~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~e 237 (501)
T KOG0459 158 RFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNE 237 (501)
T ss_pred EEEEECCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCHHHCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHH
T ss_conf 67763167655556000366111123320113200112103103663057899988623325799999505886673056
Q ss_pred HH-H----HHCCCCCCC-CCCCCCEEEEEEECCCCCCCCCCCCHHCCC----------CCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 21-0----000132000-123474036311002477411221000023----------3334200034866641677788
Q gi|254780787|r 503 RM-S----LLKHDVFVE-SMGGDILDVEISAKNNLNLDKLLDAILLQA----------EMLDLKTSINRKAEGIVVEGKL 566 (884)
Q Consensus 503 ~~-~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 566 (884)
+. + +..++...- ..-.+..++|+|+.+|.++.+.......|. ++..+.-....|....+.+-+.
T Consensus 238 Ry~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~fl~~ld~l~~~~R~~~GP~~~pI~~Kyk 317 (501)
T KOG0459 238 RYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTDSVCPWYKGPIFLEYLDELPHLERILNGPIRCPVANKYK 317 (501)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCCCEEHHCCCCCCCCCCCCEEEEHHHHCC
T ss_conf 68999999999999844468998414202464555553446665884217755500202676554689877855256205
Q ss_pred ECCCCCCHHHHHHCCHHHCCCCCCCCCCC--CCCEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 63776200000000000000000256655--5420001466532210000122211
Q gi|254780787|r 567 DRGRGPVVTVLVQKGTLSKGNILVVGDQW--GKIRALFNDRGQGISKAVPSMPIEV 620 (884)
Q Consensus 567 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~ 620 (884)
-.|++..+.+..|.+..|+.++..... ..|..++++ ...+..+.|+.-+.+
T Consensus 318 --dmGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~d-d~E~~~~~pGenvk~ 370 (501)
T KOG0459 318 --DMGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIYSD-DVETDRVAPGENVKL 370 (501)
T ss_pred --CCCEEEEEEECCCCEECCCEEEECCCCCCEEEEEEECC-CCEEEECCCCCCEEE
T ss_conf --56527887860260305984797258862578987516-520100158851589
No 77
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.82 E-value=1.2e-19 Score=152.44 Aligned_cols=151 Identities=20% Similarity=0.276 Sum_probs=111.0
Q ss_pred EEEEECCCCCHHHHHHHHHHH-HHH-HCCCCCCEECCCEEEEECCCCEEEEEECCC---HHHHHHHHH----------HH
Q ss_conf 898623685044677788642-221-001231000121499951784388885166---157899986----------66
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKA-DVA-KGEIGGITQHIGAYQVAYQGKNITFLDTPG---HAAFYEMRA----------RG 450 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~-~~~-~~e~ggitq~iga~~~~~~~~~~~~iDtPG---h~~f~~~r~----------rg 450 (884)
|+++|+.++||+||+-+|-+. .++ -+...|.|++|..|.+ +..+.|+|||| +.....++. +.
T Consensus 2 IaivG~pN~GKSTL~N~L~~~~~~~~vs~~~gtTr~i~~~~~---~~~~~~vDtPG~g~~~~~~~~~~~~~~~~~~~l~~ 78 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV---NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCEEEEECCCCEEEEEEEEEE---CCEEEEEECCCCHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 899989999999999999689962786078977852058853---87799996578401016877999999999999984
Q ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 42068059999836674023577789899709941561233124433200022100001320001234740363110024
Q gi|254780787|r 451 ARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNN 530 (884)
Q Consensus 451 ~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (884)
...+|++++|||+.+|+.+|..+.+++++..+.|+|+++||+|+..... ....+.........+......+++||++|
T Consensus 79 ~~~~~~vi~viD~~~~~~~~d~~i~~~l~~~~kp~iiVlNKiDlv~~~~--~~~~~~~~~~~l~~~~~~~~ii~iSA~~g 156 (170)
T cd01876 79 RENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSE--LAKALKEIKKELKLFEIDPPIILFSSLKG 156 (170)
T ss_pred HHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCHHH--HHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 0633499999963223748689999999876998799998675378778--99999999998742179983999988999
Q ss_pred CCCCCCCCCHH
Q ss_conf 77411221000
Q gi|254780787|r 531 LNLDKLLDAIL 541 (884)
Q Consensus 531 ~~~~~~~~~~~ 541 (884)
+|+++|++.+.
T Consensus 157 ~gi~~L~~~I~ 167 (170)
T cd01876 157 QGIDELRALIE 167 (170)
T ss_pred CCHHHHHHHHH
T ss_conf 77999999999
No 78
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.82 E-value=1.4e-19 Score=151.89 Aligned_cols=151 Identities=23% Similarity=0.328 Sum_probs=120.0
Q ss_pred EEECCCCCHHHHHHHHHHHHHH-HCCCCCCEECCCEEEEECCC-CEEEEEECCCH-------HHHHHHHHHHHHCCCCEE
Q ss_conf 8623685044677788642221-00123100012149995178-43888851661-------578999866642068059
Q gi|254780787|r 388 IMGHVDHGKTSLLDAIRKADVA-KGEIGGITQHIGAYQVAYQG-KNITFLDTPGH-------AAFYEMRARGARVTDIAV 458 (884)
Q Consensus 388 v~ghvd~GKt~lld~~r~~~~~-~~e~ggitq~iga~~~~~~~-~~~~~iDtPGh-------~~f~~~r~rg~~~~d~~i 458 (884)
++|+.++|||||+.+|.+.+++ -+..-|.|+++..+.+.... ..++|+||||+ ..+..+-.+-+.-+|+++
T Consensus 1 ivG~~N~GKStL~N~L~~~~~~~vs~~~gtT~~~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~~~~~~~~D~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCEECCCCCEECCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEE
T ss_conf 91979989999999995899610169899865645899995478659997279852223101689999999998689899
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 99983667402357778989970994156123312443320002210000132000123474036311002477411221
Q gi|254780787|r 459 LVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLD 538 (884)
Q Consensus 459 lvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (884)
+|||+.++...+..+.+..+...+.|+|+++||+|+...+.... +................+++||++|.|+++|++
T Consensus 81 ~viD~~~~~~~~~~~~l~~l~~~~~p~i~v~NK~D~~~~~~~~~---~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~L~~ 157 (163)
T cd00880 81 FVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEE---LLELRLLILLLLLGLPVIAVSALTGEGIDELRE 157 (163)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECEECCCHHHHHH---HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH
T ss_conf 99878999755669999999971974278853420678789999---999999998767998599997898979999999
Q ss_pred CHH
Q ss_conf 000
Q gi|254780787|r 539 AIL 541 (884)
Q Consensus 539 ~~~ 541 (884)
.+.
T Consensus 158 ~i~ 160 (163)
T cd00880 158 ALI 160 (163)
T ss_pred HHH
T ss_conf 999
No 79
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.1e-19 Score=152.60 Aligned_cols=124 Identities=33% Similarity=0.470 Sum_probs=107.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCC----------------------CCEECCCEEEEECCCCEEEEEECCC
Q ss_conf 530389862368504467778864222100123----------------------1000121499951784388885166
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIG----------------------GITQHIGAYQVAYQGKNITFLDTPG 439 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~g----------------------gitq~iga~~~~~~~~~~~~iDtPG 439 (884)
|---..|+-|=|.|||||-.+|.--.-+-.+|| ||...-.+.+|++.+..++++||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AGtVk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred HHCCEEEEECCCCCCCCHHHHHHHHCCHHHHCCEEEECCCCCCCCCHHHHHHHHCCCEEEEEEEEEECCCEEEECCCCCC
T ss_conf 43403688568888511889999723034305501222577634227788887568558765787603884886147998
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHH
Q ss_conf 157899986664206805999983667402357778989970994156123312443320002210
Q gi|254780787|r 440 HAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMS 505 (884)
Q Consensus 440 h~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~ 505 (884)
|++||-=--|-+...|-|+.|||+-.||+|||+--+..|+.+++|++-.+||+||..-++-....+
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdE 156 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDE 156 (528)
T ss_pred CCCCCHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHH
T ss_conf 654323678999864104689860358668899999998505984699750236566886899999
No 80
>PRK00454 engB GTPase EngB; Reviewed
Probab=99.78 E-value=2.7e-18 Score=143.13 Aligned_cols=155 Identities=22% Similarity=0.332 Sum_probs=113.1
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHH-HH-HCCCCCCEECCCEEEEECCCCEEEEEECCC----------HHHHHHHHH--
Q ss_conf 3038986236850446777886422-21-001231000121499951784388885166----------157899986--
Q gi|254780787|r 383 PPVVTIMGHVDHGKTSLLDAIRKAD-VA-KGEIGGITQHIGAYQVAYQGKNITFLDTPG----------HAAFYEMRA-- 448 (884)
Q Consensus 383 ~pvv~v~ghvd~GKt~lld~~r~~~-~~-~~e~ggitq~iga~~~~~~~~~~~~iDtPG----------h~~f~~~r~-- 448 (884)
-|-|+|+|.=+.||+||+-+|.+.. ++ -+.--|.|++|..|.. +..+.|+|||| ++.|..+..
T Consensus 24 ~p~VaivGrpNvGKSTL~N~L~g~k~~a~vs~~pgtTr~i~~~~~---~~~~~lvDtpGyG~a~~~~~~~~~~~~~i~~y 100 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDGLRLVDLPGYGYAKVSKEEKEKWQKLIEEY 100 (196)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCEEEEEEEEC---CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 968999848988899999998689736997478886079888761---88338993799741327787888999999999
Q ss_pred -HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEE
Q ss_conf -6642068059999836674023577789899709941561233124433200022100001320001234740363110
Q gi|254780787|r 449 -RGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISA 527 (884)
Q Consensus 449 -rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (884)
+...-.+.++|+||+.+|+..|-.+.+.+++..+.|+|+++||+|+..... ....+.........+.+....+++||
T Consensus 101 l~~~~~l~~villIDa~~g~~~~D~~i~~~l~~~~~p~iivlNKiD~l~~~~--~~~~~~~i~~~l~~~~~~~~ii~ISA 178 (196)
T PRK00454 101 LQKRENLKGVVLLIDSRHPLKELDLEMIEWLKEAGIPVLIVLTKADKLKKGE--RKKLLKKVKKALARFAADPEVLLFSS 178 (196)
T ss_pred HHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHCCHHH--HHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 9962333638999971658988899999999862778599998725169789--99999999999761258982899969
Q ss_pred CCCCCCCCCCCCHHC
Q ss_conf 024774112210000
Q gi|254780787|r 528 KNNLNLDKLLDAILL 542 (884)
Q Consensus 528 ~~~~~~~~~~~~~~~ 542 (884)
++|+|+++|++.|.-
T Consensus 179 ~~g~GI~eL~~~I~k 193 (196)
T PRK00454 179 LKKTGIDELRAAIAK 193 (196)
T ss_pred CCCCCHHHHHHHHHH
T ss_conf 999798999999999
No 81
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.77 E-value=4.2e-18 Score=141.81 Aligned_cols=148 Identities=19% Similarity=0.311 Sum_probs=109.4
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH-HH-HCCCCCCEECCCEEEEECCCCEEEEEECCC----------HHHHHHHHHH
Q ss_conf 53038986236850446777886422-21-001231000121499951784388885166----------1578999866
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKAD-VA-KGEIGGITQHIGAYQVAYQGKNITFLDTPG----------HAAFYEMRAR 449 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~~-~~-~~e~ggitq~iga~~~~~~~~~~~~iDtPG----------h~~f~~~r~r 449 (884)
--|.|||+|.-+.||+||+-+|.+.. ++ -+.--|.|.+|..|.+ +..+.|+|||| ++.|..+...
T Consensus 17 ~~p~IaivGrpNvGKSTL~N~L~g~k~~a~vs~~pGtTr~i~~~~~---~~~~~lvDtpGyG~~~~~~~~~~~~~~~~~~ 93 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV---NDGFRLVDLPGYGYAKVSKEEKEKWQKLIEE 93 (179)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEE---CCCEEEEECCCHHHCCCCHHHHHHHHHHHHH
T ss_conf 8978999869998889999998689855897089973660232010---4736999777602112788889999999999
Q ss_pred ---HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEE
Q ss_conf ---64206805999983667402357778989970994156123312443320002210000132000123474036311
Q gi|254780787|r 450 ---GARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEIS 526 (884)
Q Consensus 450 ---g~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (884)
....+|.++||||+.+|+..|-.+.+.++...+.|+|+++||+|+.... .....+.+.......+......+++|
T Consensus 94 ~~~~~~~l~~villiDa~~gl~~~D~~i~~~l~~~~kp~iivlNK~Dll~~~--~~~~~~~~i~~~l~~~~~~~~v~~IS 171 (179)
T TIGR03598 94 YLRGRENLKGVVLLMDIRHPLKELDLEMLEWLDERGIPVLIVLTKADKLKKS--ERNKQLKKIKKALKKDADDPSVQLFS 171 (179)
T ss_pred HHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHH--HHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 9999886430289874377998999999999997599889999781306989--99999999999973366889489997
Q ss_pred ECCCCCCC
Q ss_conf 00247741
Q gi|254780787|r 527 AKNNLNLD 534 (884)
Q Consensus 527 ~~~~~~~~ 534 (884)
|+++.|+|
T Consensus 172 A~~g~GID 179 (179)
T TIGR03598 172 SLKKTGIE 179 (179)
T ss_pred CCCCCCCC
T ss_conf 99983879
No 82
>KOG0468 consensus
Probab=99.77 E-value=9.6e-19 Score=146.17 Aligned_cols=116 Identities=31% Similarity=0.449 Sum_probs=94.9
Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHH-HH---------------HHHCC-CCCCEECCCEEEEEC-----CCCEEEEEEC
Q ss_conf 25530389862368504467778864-22---------------21001-231000121499951-----7843888851
Q gi|254780787|r 380 DIRPPVVTIMGHVDHGKTSLLDAIRK-AD---------------VAKGE-IGGITQHIGAYQVAY-----QGKNITFLDT 437 (884)
Q Consensus 380 ~~R~pvv~v~ghvd~GKt~lld~~r~-~~---------------~~~~e-~ggitq~iga~~~~~-----~~~~~~~iDt 437 (884)
..|--.|.+.||--||||+|+|.|-. |+ .-..| -.|++.+.-...+-. ...-++||||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred CCEEEEEEEEECCCCCHHHHHHHHCEECCCCCCCCCCCCCCCCCCCHHHHHCCCEEEECCEEEEEECCCCCEEEEEEECC
T ss_conf 64079998861145671578776313134655554235631366424567548567613228998567672433555258
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 6615789998666420680599998366740235777898997099415612331244
Q gi|254780787|r 438 PGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKL 495 (884)
Q Consensus 438 PGh~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~ 495 (884)
|||-.|+....++..++|+++||||+-+|||-+|.-.|+|+-...+|+.|++|||||+
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred CCCCCCHHHHHHHHHHCCEEEEEEECCCCCEEEHHHHHHHHHHCCCCEEEEEEHHHHH
T ss_conf 8755506888888652363799998225705209999999874267679997416789
No 83
>PRK00089 era GTP-binding protein Era; Reviewed
Probab=99.76 E-value=1.5e-17 Score=138.08 Aligned_cols=161 Identities=27% Similarity=0.290 Sum_probs=121.5
Q ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH-CCCCCCEECCCEEEEECCCCEEEEEECCCH--------HHHHHHHH
Q ss_conf 012553038986236850446777886422210-012310001214999517843888851661--------57899986
Q gi|254780787|r 378 DLDIRPPVVTIMGHVDHGKTSLLDAIRKADVAK-GEIGGITQHIGAYQVAYQGKNITFLDTPGH--------AAFYEMRA 448 (884)
Q Consensus 378 ~~~~R~pvv~v~ghvd~GKt~lld~~r~~~~~~-~e~ggitq~iga~~~~~~~~~~~~iDtPGh--------~~f~~~r~ 448 (884)
.+..|+-.|+|+|-=+.||+||+-+|-+.+++. +..-|.|.+.---.+..+...+.|+||||- ..+...-.
T Consensus 3 ~~~~ksG~VaivG~PNvGKSTL~N~l~~~k~siVS~k~~TTR~~i~gi~~~~~~q~i~iDTpGi~~~~~~l~~~~~~~~~ 82 (296)
T PRK00089 3 PEKFKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAW 82 (296)
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 88983799999989998889999999689617614959987283899999799799999899866746778789999999
Q ss_pred HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 66420680599998366740235777898997099415612331244332000221000013200012347403631100
Q gi|254780787|r 449 RGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAK 528 (884)
Q Consensus 449 rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (884)
....-+|++++|||+.+|+.+|..+.+.+++..+.|+|+++||+|+.. .+ .++.......+.......+++||+
T Consensus 83 ~ai~~aDlil~viD~~~~~~~~d~~i~~~l~~~~kp~ilviNKiDlv~--k~----~l~~~~~~l~~~~~f~~if~iSA~ 156 (296)
T PRK00089 83 SSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVD--KE----ELLPLLEELSELMDFAEIVPISAL 156 (296)
T ss_pred HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHCC--HH----HHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 999759999999857889898899999988874998899954788428--98----899999999853797659999677
Q ss_pred CCCCCCCCCCCHHCCC
Q ss_conf 2477411221000023
Q gi|254780787|r 529 NNLNLDKLLDAILLQA 544 (884)
Q Consensus 529 ~~~~~~~~~~~~~~~~ 544 (884)
++.|++.|++.+.-..
T Consensus 157 ~~~gi~~L~~~l~~~l 172 (296)
T PRK00089 157 KGDNVDELLDLIAKYL 172 (296)
T ss_pred CCCCHHHHHHHHHHHC
T ss_conf 8889899999999867
No 84
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.76 E-value=1e-17 Score=139.12 Aligned_cols=145 Identities=22% Similarity=0.354 Sum_probs=113.6
Q ss_pred EEEECCCCCHHHHHHHHHHHHHH-HCCCCCCEECCCEEEEECCCCEEEEEECCCHH----HHHHHHH----HHHHCCCCE
Q ss_conf 98623685044677788642221-00123100012149995178438888516615----7899986----664206805
Q gi|254780787|r 387 TIMGHVDHGKTSLLDAIRKADVA-KGEIGGITQHIGAYQVAYQGKNITFLDTPGHA----AFYEMRA----RGARVTDIA 457 (884)
Q Consensus 387 ~v~ghvd~GKt~lld~~r~~~~~-~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~----~f~~~r~----rg~~~~d~~ 457 (884)
+++|.-+.|||||+-+|.+.+++ -+..-|.|.++-.+.+.+.+..+.|+||||.. .|...+. ....-+|++
T Consensus 1 aivG~pN~GKSsL~N~l~~~~~~ivs~~~gtTr~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~i~~ad~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCEEEECCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEE
T ss_conf 90489998899999999588753540799935667899999999889998578755566067899999999999865907
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 99998366740235777898997099415612331244332000221000013200012347403631100247741122
Q gi|254780787|r 458 VLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLL 537 (884)
Q Consensus 458 ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (884)
++|+|+.+|+.++..+.++.++..+.|+|+++||+|..... ....++. .++.. ..+++||++|+|++.|+
T Consensus 81 l~viDa~~~~~~~d~~i~~~l~~~~kp~i~v~NK~D~~~~~--~~~~~~~-------~l~~~-~~i~iSA~~g~Gid~L~ 150 (157)
T cd01894 81 LFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEE--DEAAEFY-------SLGFG-EPIPISAEHGRGIGDLL 150 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCH--HHHHHHH-------HCCCC-CEEEEEEECCCCHHHHH
T ss_conf 99998999999899999999998479809999787165864--5699999-------65999-75999965894999999
Q ss_pred CCHH
Q ss_conf 1000
Q gi|254780787|r 538 DAIL 541 (884)
Q Consensus 538 ~~~~ 541 (884)
+.+.
T Consensus 151 ~~I~ 154 (157)
T cd01894 151 DAIL 154 (157)
T ss_pred HHHH
T ss_conf 9999
No 85
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=99.75 E-value=3.8e-16 Score=128.40 Aligned_cols=149 Identities=23% Similarity=0.349 Sum_probs=116.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHH-CCCCCCEECCCEEEEECCCCEEEEEECCCHH-----HHHHH----HHHHHHC
Q ss_conf 038986236850446777886422210-0123100012149995178438888516615-----78999----8666420
Q gi|254780787|r 384 PVVTIMGHVDHGKTSLLDAIRKADVAK-GEIGGITQHIGAYQVAYQGKNITFLDTPGHA-----AFYEM----RARGARV 453 (884)
Q Consensus 384 pvv~v~ghvd~GKt~lld~~r~~~~~~-~e~ggitq~iga~~~~~~~~~~~~iDtPGh~-----~f~~~----r~rg~~~ 453 (884)
|+|+|+|--+.||+||+-+|.+.+.+- ...-|.|-+.--..+.+.+..++|+||||-. .|... ......-
T Consensus 2 p~VaIvGrpNvGKStLfN~l~~~~~aIv~~~~G~TRD~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~~i~~q~~~ai~~ 81 (438)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFIVIDTGGIDPGDEDGFEKQMREQALLAIEE 81 (438)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 98999899998789999998688618715989998471589999999289999897989888207999999999999985
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 68059999836674023577789899709941561233124433200022100001320001234740363110024774
Q gi|254780787|r 454 TDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNL 533 (884)
Q Consensus 454 ~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (884)
||++++|||+.+|+.|+-.+.++.+++.+.|+|+++||+|...... ...++.. +|-+ ..+++||..+.|+
T Consensus 82 aDlIlfVvD~~~git~~D~~i~~~Lrk~~k~vilviNK~D~~~~~~--~~~ef~~-------LGf~-~~i~iSA~h~~Gi 151 (438)
T PRK00093 82 ADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGKKMEA--DAYEFYS-------LGLG-EPYPISAEHGRGI 151 (438)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH--HHHHHHH-------HCCC-CEEEEEECCCCCH
T ss_conf 8999999837768987899999999973997899997556632034--5999998-------3689-8188853056698
Q ss_pred CCCCCCHHC
Q ss_conf 112210000
Q gi|254780787|r 534 DKLLDAILL 542 (884)
Q Consensus 534 ~~~~~~~~~ 542 (884)
++|++.+..
T Consensus 152 ~~L~~~i~~ 160 (438)
T PRK00093 152 GDLLDAILE 160 (438)
T ss_pred HHHHHHHHH
T ss_conf 999999985
No 86
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=99.74 E-value=5.2e-16 Score=127.48 Aligned_cols=151 Identities=22% Similarity=0.286 Sum_probs=120.0
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHH--HHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHH----HHHHHHH----HH
Q ss_conf 55303898623685044677788642--22100123100012149995178438888516615----7899986----66
Q gi|254780787|r 381 IRPPVVTIMGHVDHGKTSLLDAIRKA--DVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHA----AFYEMRA----RG 450 (884)
Q Consensus 381 ~R~pvv~v~ghvd~GKt~lld~~r~~--~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~----~f~~~r~----rg 450 (884)
.--|+|+|+|-=+-||+||+-+|.++ .+....+ |+|-..--+.+.|.+..+.++||.|-+ .|..... ..
T Consensus 277 ~~~p~VAIVGRPNVGKSTLFNRL~g~r~AIV~d~p-GvTRDR~~~~~~~~~~~F~lvDTGG~~~~~~~~~~~I~~Q~~~A 355 (714)
T PRK09518 277 EPVGTVAIVGRPNVGKSTLVNRILGRREAVVEDTP-GVTRDRVSYDAEWAGRDFKLVDTGGWEADAEGIEAAIASQAEIA 355 (714)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCEEEECCCC-CCCCCCCEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 88887999899987689999886288416846989-98837555799999916999979999988326999999999999
Q ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 42068059999836674023577789899709941561233124433200022100001320001234740363110024
Q gi|254780787|r 451 ARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNN 530 (884)
Q Consensus 451 ~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (884)
..-+|++++|||+-.|+.|.-.+...++++.+.|+|+++||+|-.... ....+|... |.+ ..+++||..|
T Consensus 356 i~eADlIlFVVD~~~Glt~~D~~ia~~LRk~~KpvilvvNK~D~~~~e--~~~~ef~~L-------G~~-e~~~ISA~Hg 425 (714)
T PRK09518 356 MTLADAIVFVVDGQVGMTSTDEVIARMLQRAGKPVVLVANKIDDQASE--YDVAEFWKL-------GLG-EPYSISAMHG 425 (714)
T ss_pred HHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCH--HHHHHHHHC-------CCC-CCEEEECCCC
T ss_conf 996899999996897989789999999985699889999897887640--129999965-------999-9689847357
Q ss_pred CCCCCCCCCHHC
Q ss_conf 774112210000
Q gi|254780787|r 531 LNLDKLLDAILL 542 (884)
Q Consensus 531 ~~~~~~~~~~~~ 542 (884)
.|+.+||+.++-
T Consensus 426 ~G~~dLld~i~~ 437 (714)
T PRK09518 426 RGVADLLDVVLD 437 (714)
T ss_pred CCHHHHHHHHHH
T ss_conf 898999999996
No 87
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=99.72 E-value=3e-16 Score=129.08 Aligned_cols=152 Identities=22% Similarity=0.311 Sum_probs=119.2
Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHH--HHHCCCCCCEECCCEEEEECCCCEEEEEECCCHH----HHHHH----HHH
Q ss_conf 2553038986236850446777886422--2100123100012149995178438888516615----78999----866
Q gi|254780787|r 380 DIRPPVVTIMGHVDHGKTSLLDAIRKAD--VAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHA----AFYEM----RAR 449 (884)
Q Consensus 380 ~~R~pvv~v~ghvd~GKt~lld~~r~~~--~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~----~f~~~----r~r 449 (884)
.-|-|+|+|+|-=+.||+||+-+|.+.+ +++-.+ |.|-..--+.+.+.+..++|+||||-. .|... ...
T Consensus 35 ~~~lPiVaIvGRPNVGKStLFNrL~~~~~AIV~d~p-GvTRDr~~~~~~~~~~~f~lvDTgG~~~~~~~~~~~i~~q~~~ 113 (474)
T PRK03003 35 SGPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDIP-GVTRDRVSYDAEWNGRRFVVQDTGGWEPDAKGLQALVAEQAEV 113 (474)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCEEEECCCC-CCCCCCEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 799998999899998889999998688638805989-9880863689999992899997999999747899999999999
Q ss_pred HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 64206805999983667402357778989970994156123312443320002210000132000123474036311002
Q gi|254780787|r 450 GARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKN 529 (884)
Q Consensus 450 g~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (884)
...-||++++|||+.+|+.|.-.+.++++++.+.|+|+++||+|-... +....++.. +|-+. .+++||..
T Consensus 114 ai~eaD~IlfVvD~~~glt~~D~eia~~LRk~~kpviLVvNK~D~~~~--~~~~~efy~-------LGf~~-~i~ISA~H 183 (474)
T PRK03003 114 AMRTADAVLFVVDATVGATATDEAVARLLRRSGKPVFLAANKVDSERG--EADAAALWS-------LGLGE-PHPVSALH 183 (474)
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCH--HHHHHHHHH-------HCCCC-EEEEEHHC
T ss_conf 998699999999689898878999999987539977998675566210--234899997-------57998-69960203
Q ss_pred CCCCCCCCCCHHC
Q ss_conf 4774112210000
Q gi|254780787|r 530 NLNLDKLLDAILL 542 (884)
Q Consensus 530 ~~~~~~~~~~~~~ 542 (884)
|.|+++|++.+.-
T Consensus 184 g~Gi~dLld~i~~ 196 (474)
T PRK03003 184 GRGVADLLDAVLA 196 (474)
T ss_pred CCCHHHHHHHHHH
T ss_conf 7897999999997
No 88
>TIGR00503 prfC peptide chain release factor 3; InterPro: IPR004548 Peptide chain release factor 3 increases the formation of ribosomal termination complexes and stimulates activity of RF-1 and RF-2. It binds to guanine nucleotides and has a strong preference for UGA stop codons. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis sp. (strain PCC 6803), and in Staphylococcus aureus.; GO: 0005525 GTP binding, 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=99.72 E-value=6.3e-18 Score=140.60 Aligned_cols=121 Identities=27% Similarity=0.393 Sum_probs=107.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCC----------------------CCEECCCEEEEECCCCEEEEEECCCHHH
Q ss_conf 389862368504467778864222100123----------------------1000121499951784388885166157
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADVAKGEIG----------------------GITQHIGAYQVAYQGKNITFLDTPGHAA 442 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~~~~e~g----------------------gitq~iga~~~~~~~~~~~~iDtPGh~~ 442 (884)
-.+|+-|=|.|||||-.++.----+-.+|| ||.+.-...+|++.+.-+++||||||++
T Consensus 13 ~FAIISHPDAGKTT~TEK~LLyG~AIQ~AG~VK~r~S~~~A~SDWM~ME~QRGISIT~~VlQF~Y~~~l~NLLDTPGH~D 92 (530)
T TIGR00503 13 TFAIISHPDAGKTTLTEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVLQFPYRDCLVNLLDTPGHED 92 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEEECCCCCEEECCCCCCCCC
T ss_conf 54366168887424678888742566522441220012212213788750588144412774145774562036858887
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHH
Q ss_conf 899986664206805999983667402357778989970994156123312443320002210
Q gi|254780787|r 443 FYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMS 505 (884)
Q Consensus 443 f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~ 505 (884)
||.=-=|-+...|-++.|||+-.||+.||+--+..++-+.+|++-.+||+||+.-.|-....+
T Consensus 93 FSEDTYRTL~A~D~~~M~IDaAKG~E~~T~KL~EV~RLR~~PI~TF~NKLDR~~~~P~ELlDE 155 (530)
T TIGR00503 93 FSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDLPILTFINKLDRDIRDPLELLDE 155 (530)
T ss_pred CCCHHHHHHHHHHHHEEEHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHH
T ss_conf 640467999985123001111256123424454201000474433523206543553788888
No 89
>KOG0469 consensus
Probab=99.71 E-value=9.7e-18 Score=139.30 Aligned_cols=110 Identities=31% Similarity=0.476 Sum_probs=92.6
Q ss_pred EEEEECCCCCHHHHHHHHHH-HHHHH----CC-----------CCCCEECCCEEEEE----------------CCCCEEE
Q ss_conf 89862368504467778864-22210----01-----------23100012149995----------------1784388
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRK-ADVAK----GE-----------IGGITQHIGAYQVA----------------YQGKNIT 433 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~-~~~~~----~e-----------~ggitq~iga~~~~----------------~~~~~~~ 433 (884)
.+|+.||||||+||.|+|-. ..+.+ || ..|||+.-.|..+- ..+-.|+
T Consensus 22 mSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FLiN 101 (842)
T KOG0469 22 MSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFLIN 101 (842)
T ss_pred CEEEEEECCCCCHHHHHHHHHHCEEEECCCCCCCCCCCCCCHHHCCEEEEEEEEEEHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 04899843785500677877615124122678512434101565565763201320121317679985177877633689
Q ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 88516615789998666420680599998366740235777898997099415612331244
Q gi|254780787|r 434 FLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKL 495 (884)
Q Consensus 434 ~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~ 495 (884)
+||.|||-+||+...-.+.+||.|+.|||-.+|+.-||.-.+..+-.-.+.-++++||+||.
T Consensus 102 LIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRA 163 (842)
T KOG0469 102 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRA 163 (842)
T ss_pred ECCCCCCCCCHHHHHHEEEECCCCEEEEECCCCEEECHHHHHHHHHHHHCCCEEEEEHHHHH
T ss_conf 51689854523442310473267089997247448525999999987433524774146678
No 90
>PRK04213 GTP-binding protein; Provisional
Probab=99.70 E-value=2.1e-16 Score=130.24 Aligned_cols=155 Identities=23% Similarity=0.311 Sum_probs=113.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCH-------H----HHHHHHH---
Q ss_conf 3038986236850446777886422210012310001214999517843888851661-------5----7899986---
Q gi|254780787|r 383 PPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGH-------A----AFYEMRA--- 448 (884)
Q Consensus 383 ~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh-------~----~f~~~r~--- 448 (884)
-|.|+|.|.=+.||+|||-+|.+.++.-+.--|.|+++-.|.+ ..+.|+||||. . .+..+..
T Consensus 1 ~P~VaivGRpNVGKSTL~N~L~g~k~~vs~~pg~Tr~~~~~~~----~~~~~vDtPG~g~~~~~~~~~~~~~~~~~~~~~ 76 (195)
T PRK04213 1 MPEIIFVGRSNVGKSTLIRALTGKKVRVGKRPGVTLKPNEYDW----GDFILVDLPGFGFMSGVPKKVQERIKDEIVHYI 76 (195)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEC----CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9879997699988999999996898513489964873458850----889999999962224588889999999999999
Q ss_pred -HHHHCCCCEEEEEECCC-----------CCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf -66420680599998366-----------740235777898997099415612331244332000221000013200012
Q gi|254780787|r 449 -RGARVTDIAVLVLAADE-----------EIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESM 516 (884)
Q Consensus 449 -rg~~~~d~~ilvv~~~~-----------g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~ 516 (884)
..+..+|++++|||+.. |..|.-.+.+.+++..++|+|+|+||+|+... .+.....+.+.......|
T Consensus 77 ~~~~~~~~~~~~vvD~~~~~~~~dr~~~~~~~~~D~~i~~~l~~~~~p~ilv~NKiD~i~~-~~~~l~~i~e~~~~~~~~ 155 (195)
T PRK04213 77 EDNADRIAAAVLVVDGKSFPEIIERWESRGEIPIDVEMFDFLRELGINPIVAVNKMDKIKN-SEEVLDEIAERLGLYPPW 155 (195)
T ss_pred HHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHCCC-HHHHHHHHHHHHHCCCCH
T ss_conf 9988517899999957865442112344567777899999998749987999987330587-788899999998257615
Q ss_pred CC-CCEEEEEEECCCCCCCCCCCCHHCC
Q ss_conf 34-7403631100247741122100002
Q gi|254780787|r 517 GG-DILDVEISAKNNLNLDKLLDAILLQ 543 (884)
Q Consensus 517 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (884)
.. ....+++||+.+ |++.|++.|.-+
T Consensus 156 ~~~~~~iv~iSakk~-Gid~L~~~I~~~ 182 (195)
T PRK04213 156 RQWLDIIAPISAKKG-GIEALKGLINKR 182 (195)
T ss_pred HHCCCEEEEEECCCC-CHHHHHHHHHHH
T ss_conf 656987999845779-999999999996
No 91
>pfam10662 PduV-EutP Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood.
Probab=99.69 E-value=6.6e-17 Score=133.60 Aligned_cols=134 Identities=25% Similarity=0.325 Sum_probs=97.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCC----HHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 898623685044677788642221001231000121499951784388885166----1578999866642068059999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPG----HAAFYEMRARGARVTDIAVLVL 461 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPG----h~~f~~~r~rg~~~~d~~ilvv 461 (884)
|+|+|..+.||||||.+|.+.++... =||.+. ....|||||| |..|.......+.-||+++|||
T Consensus 4 VaivGrpNvGKSTLlN~L~g~~i~~~----K~qtt~--------~~~~~IDTPG~~~~~~~~~~~~~~~~~daDvil~vv 71 (143)
T pfam10662 4 IMLIGRSGCGKTTLTQALNGEELKYK----KTQAIE--------FSDNMIDTPGEYLENRRFYSALIVTAADADVIALVQ 71 (143)
T ss_pred EEEECCCCCCHHHHHHHHCCCCEEEC----CCEEEE--------ECCCEEECCCCCCCCHHHHHHHHHHHHHCCEEEEEE
T ss_conf 99989999999999999759944517----870798--------557489998766562899999999996499999998
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCH
Q ss_conf 8366740235777898997099415612331244332000221000013200012347403631100247741122100
Q gi|254780787|r 462 AADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAI 540 (884)
Q Consensus 462 ~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (884)
|+++...+ ....+++..+.|+|+++||||........ ..... ....++ ....+++||.+|.|+++|++.+
T Consensus 72 Da~~~~~~---~~~~~~~~~~kpvIlViNKiD~~~~~~~l---~~~~~--~~~~~~-~~~i~~iSA~~g~Gid~L~~~l 141 (143)
T pfam10662 72 DATEPWSV---FPPGFASMFNKPVIGIITKIDLAKDEANI---EMVEE--WLNNAG-AEKIFEVSAVTNEGIDELFAYL 141 (143)
T ss_pred ECCCCCCC---CCHHHHHHCCCCEEEEEECCCCCCCHHHH---HHHHH--HHHHCC-CCEEEEEECCCCCCHHHHHHHH
T ss_conf 77886675---68778975479889999802245756678---99999--997589-9879998898998999999997
No 92
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.68 E-value=2.9e-16 Score=129.17 Aligned_cols=142 Identities=29% Similarity=0.367 Sum_probs=106.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHH-CCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHH--------HHHHHHCCCC
Q ss_conf 8986236850446777886422210-012310001214999517843888851661578999--------8666420680
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAK-GEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEM--------RARGARVTDI 456 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~-~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~--------r~rg~~~~d~ 456 (884)
|+++|.-+.|||||+-+|.+.+++. +.--|.|.++-...+.+++..++|+||||....... ...-..-+|+
T Consensus 4 ValvG~pN~GKStL~N~l~g~~~~ivs~~pgtTrd~~~~~~~~~~~~i~l~DTpG~~~~~~~~e~~~~~~~~~~i~~aDl 83 (157)
T cd04164 4 VVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADL 83 (157)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCEEECCCCCEEEECCEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCE
T ss_conf 99988999989999999968973343288984786326789539988999726775444578999999999863015767
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 59999836674023577789899709941561233124433200022100001320001234740363110024774112
Q gi|254780787|r 457 AVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKL 536 (884)
Q Consensus 457 ~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (884)
+++|+|+.++..++-.+.+..+ .+.|+|+++||+|+...... ... ......+++||.+|+|+++|
T Consensus 84 il~vvD~~~~~~~~~~~~~~~~--~~~p~i~v~NKiDl~~~~~~------~~~-------~~~~~vi~ISA~~g~Gi~~L 148 (157)
T cd04164 84 VLFVIDASRGLDEEDLEILELP--ADKPIIVVLNKSDLLPDSEL------LSL-------LAGKPIIAISAKTGEGLDEL 148 (157)
T ss_pred EEEEEECCCCCCHHHHHHHHHH--CCCCEEEEEECCCCCCCHHH------HHH-------CCCCCEEEEECCCCCCHHHH
T ss_conf 9999889877888899999851--47998999967601486667------985-------28997799985279599999
Q ss_pred CCCHHC
Q ss_conf 210000
Q gi|254780787|r 537 LDAILL 542 (884)
Q Consensus 537 ~~~~~~ 542 (884)
++.+.-
T Consensus 149 ~~~I~e 154 (157)
T cd04164 149 KEALLE 154 (157)
T ss_pred HHHHHH
T ss_conf 999999
No 93
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.68 E-value=4e-16 Score=128.22 Aligned_cols=156 Identities=22% Similarity=0.210 Sum_probs=113.7
Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 25530389862368504467778864222100123100012149995178438888516615789998666420680599
Q gi|254780787|r 380 DIRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 380 ~~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
..|.|=|+|+|+-+.||||||.++.+.....- ..|...-...+..++..++|-||+||+.|..|...-..-+|.+|+
T Consensus 11 ~~~~~Ki~ilG~~~sGKTsll~~l~~~~~~~~---~pT~g~~~~~v~~~~~~~~lwD~~G~~~~~~~~~~y~~~a~~iI~ 87 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDISHI---TPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCC---CCCCCEEEEEEEECCEEEEEEECCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 68775899997999988999999856998660---681132379999899999998558751012689976555637999
Q ss_pred EEECCCCC-CHHHH----HHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 99836674-02357----77898997099415612331244332000221000013200012347403631100247741
Q gi|254780787|r 460 VLAADEEI-MPQAI----ESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLD 534 (884)
Q Consensus 460 vv~~~~g~-~~qt~----e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (884)
|||+.+-- ..++. +.+......++|++|++||+|++++.......+.+.... -.+.....+++||++|+|++
T Consensus 88 VvD~td~~~~~~~~~~l~~~l~~~~~~~~PiLiv~NK~Dl~~a~~~~eI~~~l~l~~---~~~~~~~i~~~SA~tG~Gi~ 164 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHD---LRDRTWHIQACSAKTGEGLQ 164 (173)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHCHHH---CCCCCCEEEEEECCCCCCHH
T ss_conf 996675688999999999997413006983899997666777899999999858764---34887589995785793989
Q ss_pred CCCCCHH
Q ss_conf 1221000
Q gi|254780787|r 535 KLLDAIL 541 (884)
Q Consensus 535 ~~~~~~~ 541 (884)
++++.+.
T Consensus 165 E~f~WL~ 171 (173)
T cd04155 165 EGMNWVC 171 (173)
T ss_pred HHHHHHH
T ss_conf 9999985
No 94
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.67 E-value=1.8e-15 Score=123.86 Aligned_cols=147 Identities=24% Similarity=0.360 Sum_probs=115.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHCCCCCCEECCCEEEEECCCCEEEEEECCCHH--------HHHHHHHHHHHCC
Q ss_conf 38986236850446777886422--2100123100012149995178438888516615--------7899986664206
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKAD--VAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHA--------AFYEMRARGARVT 454 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~--~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~--------~f~~~r~rg~~~~ 454 (884)
+|+|+|--+.||+||+-+|.+.. +.... -|.|-+.-...+.+.+..+.|+||||-. ....-......-|
T Consensus 1 ~VaIvGrpNVGKStLfN~L~~~~~aIv~~~-~G~TRD~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~q~~~ai~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVADT-PGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCEEECCCC-CCCCCCCEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 989999999878999999878861761598-9988773379999999079999898989874378999999999999867
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 80599998366740235777898997099415612331244332000221000013200012347403631100247741
Q gi|254780787|r 455 DIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLD 534 (884)
Q Consensus 455 d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (884)
|++++|||+..|+.|+-.+.++.+++.+.|+|+++||+|-... +....++... |-.. .+++||..|.|++
T Consensus 80 DlIlfVvD~~~git~~D~~i~~~Lrk~~k~vilviNK~D~~~~--~~~~~ef~~L-------G~~~-~i~iSA~h~~Gi~ 149 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKE--DAVAAEFYSL-------GFGE-PIPISAEHGRGIG 149 (429)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCH--HHHHHHHHHH-------CCCC-EEEEEECCCCCHH
T ss_conf 9999998577689867999999998719978999983467531--4569999983-------6898-6887420467999
Q ss_pred CCCCCHHC
Q ss_conf 12210000
Q gi|254780787|r 535 KLLDAILL 542 (884)
Q Consensus 535 ~~~~~~~~ 542 (884)
+|++.+..
T Consensus 150 ~L~~~i~~ 157 (429)
T TIGR03594 150 DLLDAILE 157 (429)
T ss_pred HHHHHHHH
T ss_conf 99999996
No 95
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=99.66 E-value=2.2e-15 Score=123.23 Aligned_cols=159 Identities=23% Similarity=0.281 Sum_probs=125.5
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH-HHHCCCCCCEECCCEEEEECCCCEEEEEECCCH----------HHHHHHHHH
Q ss_conf 553038986236850446777886422-210012310001214999517843888851661----------578999866
Q gi|254780787|r 381 IRPPVVTIMGHVDHGKTSLLDAIRKAD-VAKGEIGGITQHIGAYQVAYQGKNITFLDTPGH----------AAFYEMRAR 449 (884)
Q Consensus 381 ~R~pvv~v~ghvd~GKt~lld~~r~~~-~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh----------~~f~~~r~r 449 (884)
..++=|||+|.-+.||+||+-+|.+.+ +.-+..-|.|...=...+.+.+..+.||||+|- |-|+.+|+-
T Consensus 209 ~~~~rIAIvGrPNvGKStL~N~llg~~r~ivs~~~GTTRDsI~~~~~~~~~~~~liDTAGiRrk~kv~~~iE~~s~~rtl 288 (474)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVHDVAGTTVDPVDSLIELGGKVWRFVDTAGLRRKVGQASGHEFYASLRTH 288 (474)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 77627999808998788999998589756745899851544058999999899999898766355334314589999999
Q ss_pred -HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEC
Q ss_conf -6420680599998366740235777898997099415612331244332000221000013200012347403631100
Q gi|254780787|r 450 -GARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAK 528 (884)
Q Consensus 450 -g~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (884)
...-||++|||||+.+|+..|-...+.++...+.|+||++||+|+...... ..+.......-......+.+.+||+
T Consensus 289 ~aI~~advvilviDa~egit~QD~~Ia~~v~~~gk~~IivvNKwDLv~~~~~---~~~~~~i~~~l~~~~~~piv~ISA~ 365 (474)
T PRK03003 289 AAIDAAEVAVVLIDASEPLTEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRR---YYLEREIDRELAQVRWAPRVNISAK 365 (474)
T ss_pred HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECHHCCCHHHH---HHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 9987335579998546587499999999999809957999971441686789---9999999864554489856999810
Q ss_pred CCCCCCCCCCCHHC
Q ss_conf 24774112210000
Q gi|254780787|r 529 NNLNLDKLLDAILL 542 (884)
Q Consensus 529 ~~~~~~~~~~~~~~ 542 (884)
+|.++..++..+..
T Consensus 366 ~g~~i~kL~~~i~~ 379 (474)
T PRK03003 366 TGRAVQKLVPALET 379 (474)
T ss_pred CCCCHHHHHHHHHH
T ss_conf 48798999999999
No 96
>pfam02421 FeoB_N Ferrous iron transport protein B. Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.66 E-value=8.8e-16 Score=125.90 Aligned_cols=148 Identities=25% Similarity=0.381 Sum_probs=102.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHH---HHHH--HHHHHH---HCCCCE
Q ss_conf 89862368504467778864222100123100012149995178438888516615---7899--986664---206805
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHA---AFYE--MRARGA---RVTDIA 457 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~---~f~~--~r~rg~---~~~d~~ 457 (884)
|+|+|.-+.||+||+.+|.+.+..-+..-|.|.+.-...+.+.+..+.|+||||+. .++. +..+-+ .-+|++
T Consensus 2 VaIvG~PNvGKSTLlN~L~g~~~~Vs~~pGtTrd~~~~~~~~~~~~~~lvDTpGi~~~~~~~~~e~v~~~~~~~~~aDlv 81 (188)
T pfam02421 2 IALVGNPNVGKTTLFNALTGARQHVGNWPGVTVEKKEGTFKYKGYEIEIVDLPGTYSLSPYSEEEKVARDYLLEEKPDVI 81 (188)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCE
T ss_conf 89988999899999999959996563899972333576875251679999688850146532789999999862368736
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 99998366740235777898997099415612331244332000221000013200012347403631100247741122
Q gi|254780787|r 458 VLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLL 537 (884)
Q Consensus 458 ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (884)
++|||+.+ +. ++.--+..+...+.|+|+++||+|............. ..+.++ ...+++||++|+|+++|+
T Consensus 82 l~vvDa~~-~e-r~l~l~~~l~~~~~p~IvVlNK~Dl~~~~~~~~~~~~-----l~~~lg--~~vi~ISA~~g~Gi~eL~ 152 (188)
T pfam02421 82 INVVDATN-LE-RNLYLTLQLLELGIPVVVALNMMDEAEKKGIKIDIKK-----LSELLG--VPVVPTSARKGEGIDELK 152 (188)
T ss_pred EEEEECCC-HH-HHHHHHHHHHHCCCCEEEEECCCHHCCCCCCHHHHHH-----HHHHCC--CCEEEEEEECCCCHHHHH
T ss_conf 99976762-45-4489999999769988999617020100365203999-----998739--968999931699999999
Q ss_pred CCHHC
Q ss_conf 10000
Q gi|254780787|r 538 DAILL 542 (884)
Q Consensus 538 ~~~~~ 542 (884)
+.+.-
T Consensus 153 ~~I~~ 157 (188)
T pfam02421 153 DAIIE 157 (188)
T ss_pred HHHHH
T ss_conf 99999
No 97
>KOG0466 consensus
Probab=99.65 E-value=6.5e-17 Score=133.68 Aligned_cols=206 Identities=25% Similarity=0.362 Sum_probs=144.1
Q ss_pred CCCCE--EEEEECCCCCHHHHHHHHHHHHHHH--CC-CCCCEECCCEEEE-----EC-----------------------
Q ss_conf 55303--8986236850446777886422210--01-2310001214999-----51-----------------------
Q gi|254780787|r 381 IRPPV--VTIMGHVDHGKTSLLDAIRKADVAK--GE-IGGITQHIGAYQV-----AY----------------------- 427 (884)
Q Consensus 381 ~R~pv--v~v~ghvd~GKt~lld~~r~~~~~~--~e-~ggitq~iga~~~-----~~----------------------- 427 (884)
.|..- +.-+|||.|||+|+..+|.+-+... .| ...||..+|--+. ..
T Consensus 34 sRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~ 113 (466)
T KOG0466 34 SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCD 113 (466)
T ss_pred HHEEEEEECCEECCCCCCCEEEEEECCCEEEEEHHHHHCCEEEEECCCCCEEEECCCCCCCCCCHHHCCCCCCCCCCCCC
T ss_conf 12014430211100257402445404614887133442152688513544578558988999663020478999999865
Q ss_pred -C--------CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCC-CHHHHHHHHHHHHCCCC-EEEECCCCCCCC
Q ss_conf -7--------843888851661578999866642068059999836674-02357778989970994-156123312443
Q gi|254780787|r 428 -Q--------GKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEI-MPQAIESINHAKAADVS-IIVAINKIDKLG 496 (884)
Q Consensus 428 -~--------~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~-~~qt~e~~~~~~~~~~p-~iva~nk~d~~~ 496 (884)
. .....|+|+|||.-+.+.+-.|+.+.|.|+|+|++++.. +|||-||+--..-..+. +||.-||||+..
T Consensus 114 ~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~ 193 (466)
T KOG0466 114 RPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIK 193 (466)
T ss_pred CCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCEEEEEECHHHHHH
T ss_conf 68998745899987751479618899887432677543341010488898985066788877863141899821233543
Q ss_pred CCCCHHHHHHHCCCCCC-CCCCCCCEEEEEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEE--------EE
Q ss_conf 32000221000013200-0123474036311002477411221000023333420003486664167778--------86
Q gi|254780787|r 497 ADPQKVRMSLLKHDVFV-ESMGGDILDVEISAKNNLNLDKLLDAILLQAEMLDLKTSINRKAEGIVVEGK--------LD 567 (884)
Q Consensus 497 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 567 (884)
........+ +...+. .....+.+.+|+||..+.|++-+.+.+...--.... +...|....++.++ ++
T Consensus 194 e~~A~eq~e--~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvR--df~s~prlIVIRSFDVNkPG~ev~ 269 (466)
T KOG0466 194 ESQALEQHE--QIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVR--DFTSPPRLIVIRSFDVNKPGSEVD 269 (466)
T ss_pred HHHHHHHHH--HHHHHHHCCCCCCCCEEEEHHHHCCCHHHHHHHHHHCCCCCCC--CCCCCCCEEEEEEECCCCCCCHHH
T ss_conf 778898899--9999974565579952101364336767999999861898820--147897289998623689984122
Q ss_pred CCCCCCHHHHHHCCHHHCCCCCC
Q ss_conf 37762000000000000000002
Q gi|254780787|r 568 RGRGPVVTVLVQKGTLSKGNILV 590 (884)
Q Consensus 568 ~~~~~~~~~~~~~g~~~~~~~~~ 590 (884)
...|.++.+.+..|.|+.|+.+-
T Consensus 270 ~lkGgvaggsil~Gvlkvg~~IE 292 (466)
T KOG0466 270 DLKGGVAGGSILKGVLKVGQEIE 292 (466)
T ss_pred CCCCCCCCCHHHHHHHHCCCEEE
T ss_conf 14574203055432420485888
No 98
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=99.65 E-value=5.1e-15 Score=120.71 Aligned_cols=161 Identities=23% Similarity=0.288 Sum_probs=126.2
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHH--HHHCCCCCCEECCCEEEEECCCCEEEEEECCCH----------HHHHHH
Q ss_conf 12553038986236850446777886422--210012310001214999517843888851661----------578999
Q gi|254780787|r 379 LDIRPPVVTIMGHVDHGKTSLLDAIRKAD--VAKGEIGGITQHIGAYQVAYQGKNITFLDTPGH----------AAFYEM 446 (884)
Q Consensus 379 ~~~R~pvv~v~ghvd~GKt~lld~~r~~~--~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh----------~~f~~~ 446 (884)
....++=|||+|--+.||+||+-+|.+.+ +++..+ |.|..-=-..+.+.+..+.|+||+|- |-|+..
T Consensus 168 ~~~~~iriaiiGrpNvGKStl~N~ll~~~r~ivs~~~-GtTrD~i~~~~~~~~~~~~~iDTaGirkk~k~~~~iE~~s~~ 246 (438)
T PRK00093 168 EEEDPIKIAIIGRPNVGKSTLINALLGEERVIVSDIA-GTTRDSIDTPFERDGQKYTLIDTAGIRRRGKVTEGIEKYSVI 246 (438)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCC-CCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf 4455605999558886556788876543332047999-851123267999899679999898987656421378899999
Q ss_pred HH-HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEE
Q ss_conf 86-66420680599998366740235777898997099415612331244332000221000013200012347403631
Q gi|254780787|r 447 RA-RGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEI 525 (884)
Q Consensus 447 r~-rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (884)
++ +-..-||++|||||+.+|+..|-.-.+.++.+.+.|+||++||+|+... .......+.......-.+....+.+.+
T Consensus 247 ~t~~~i~~~dvvilviDa~~~~~~qD~~i~~~i~~~gk~~ii~vNKwDLv~~-~~~~~~~~~~~i~~~l~~~~~~pIvfi 325 (438)
T PRK00093 247 RTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVEK-DSKTMEEVKEELRRRLPFLDFAPIVFI 325 (438)
T ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECHHCCCC-CHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 9999986446699999766588488899999999819966999970222566-389999999999975612589877998
Q ss_pred EECCCCCCCCCCCCHH
Q ss_conf 1002477411221000
Q gi|254780787|r 526 SAKNNLNLDKLLDAIL 541 (884)
Q Consensus 526 ~~~~~~~~~~~~~~~~ 541 (884)
||+++.|+..+++.+.
T Consensus 326 SA~~g~gi~kl~~~i~ 341 (438)
T PRK00093 326 SALTGQGVDKLFESIL 341 (438)
T ss_pred ECCCCCCHHHHHHHHH
T ss_conf 5147779999999999
No 99
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.65 E-value=2.4e-15 Score=122.88 Aligned_cols=151 Identities=28% Similarity=0.336 Sum_probs=101.0
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEEC-CCCEEEEEECCCH---------HHHHHHHH
Q ss_conf 1255303898623685044677788642221001231000121499951-7843888851661---------57899986
Q gi|254780787|r 379 LDIRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAY-QGKNITFLDTPGH---------AAFYEMRA 448 (884)
Q Consensus 379 ~~~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~-~~~~~~~iDtPGh---------~~f~~~r~ 448 (884)
.+.--|+|+|+|.-+.||+|||-+|.+.++.-+..-|.|..--...+.. ++..++|+||||+ ++|....
T Consensus 37 ~~~g~p~VaivG~PNvGKSTLlN~L~g~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~i~~~p~~lie~~~~tl- 115 (204)
T cd01878 37 KRSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL- 115 (204)
T ss_pred HHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHH-
T ss_conf 7459987999889999899999999489963415677645763668995699779998368644678378999999999-
Q ss_pred HHHHCCCCEEEEEECCCCCCH-HHH---HHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEE
Q ss_conf 664206805999983667402-357---7789899709941561233124433200022100001320001234740363
Q gi|254780787|r 449 RGARVTDIAVLVLAADEEIMP-QAI---ESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVE 524 (884)
Q Consensus 449 rg~~~~d~~ilvv~~~~g~~~-qt~---e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (884)
.-+.-||++++|||+.++... |.. +.+..+...+.|+|+++||+|........ .+. .......++
T Consensus 116 e~i~~AD~il~vvD~s~~~~~~~~~~~~~~l~~l~~~~k~~i~V~NKiDl~~~~~~~---~~~--------~~~~~~~i~ 184 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERL--------EAGRPDAVF 184 (204)
T ss_pred HHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHH---HHH--------HHCCCCEEE
T ss_conf 999739899999979985366779999999998065557607888670479957589---999--------708998799
Q ss_pred EEECCCCCCCCCCCCHH
Q ss_conf 11002477411221000
Q gi|254780787|r 525 ISAKNNLNLDKLLDAIL 541 (884)
Q Consensus 525 ~~~~~~~~~~~~~~~~~ 541 (884)
+||++|.|++.|++.+.
T Consensus 185 ISA~~g~Gid~L~~~I~ 201 (204)
T cd01878 185 ISAKTGEGLDELLEAIE 201 (204)
T ss_pred EECCCCCCHHHHHHHHH
T ss_conf 98868949999999999
No 100
>pfam00025 Arf ADP-ribosylation factor family. Pfam combines a number of different Prosite families together
Probab=99.64 E-value=1.6e-15 Score=124.12 Aligned_cols=149 Identities=23% Similarity=0.263 Sum_probs=105.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCC--EEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 3898623685044677788642221001231000121--49995178438888516615789998666420680599998
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIG--AYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLA 462 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~ig--a~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~ 462 (884)
=|+++|.-+.||||||.++....... .+..+| ...+...+..++|.||+||+.|..+...-..-||.+|+|+|
T Consensus 16 Ki~llG~~~vGKTsll~~~~~~~~~~-----~~pTig~~~~~v~~~~~~~~iwDt~Gqe~~~~~~~~y~~~a~~ii~V~D 90 (174)
T pfam00025 16 RILILGLDNAGKTTILYKLKLGEIVT-----TIPTIGFNVETVTYKNVKFTVWDVGGQESLRPLWRNYFPNTDAVIFVVD 90 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC-----CCCCCCCEEEEEEECCEEEEEEECCCCCCCCHHHHHHHCCCCEEEEEEE
T ss_conf 99999999998899999995499887-----4474682389999899999998279870232679988417826899986
Q ss_pred CCCCC-CHHHHHHHHHH----HHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 36674-02357778989----97099415612331244332000221000013200012347403631100247741122
Q gi|254780787|r 463 ADEEI-MPQAIESINHA----KAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLL 537 (884)
Q Consensus 463 ~~~g~-~~qt~e~~~~~----~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (884)
+.+-- ..+..+-+..+ ...++|++|+.||+|++.........+.+. .....+....++++||++|+|+++++
T Consensus 91 ~t~~~s~~~~~~~l~~~l~~~~~~~~piliv~NK~DL~~~~~~~ei~~~~~---~~~~~~~~~~~~~~SAktG~gI~e~f 167 (174)
T pfam00025 91 SADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPGAMSEAEIRELLG---LHELKSRPWEIQGCSAVTGEGLDEGL 167 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHH---HHHCCCCCCEEEEEECCCCCCHHHHH
T ss_conf 786787999999999987542358970899872566767899999999997---86441799689999886795989999
Q ss_pred CCHH
Q ss_conf 1000
Q gi|254780787|r 538 DAIL 541 (884)
Q Consensus 538 ~~~~ 541 (884)
+.+.
T Consensus 168 ~~L~ 171 (174)
T pfam00025 168 DWLS 171 (174)
T ss_pred HHHH
T ss_conf 9999
No 101
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.63 E-value=2.2e-15 Score=123.13 Aligned_cols=146 Identities=26% Similarity=0.342 Sum_probs=102.2
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHH-----HHHHHHH---HCCCCEEE
Q ss_conf 862368504467778864222100123100012149995178438888516615789-----9986664---20680599
Q gi|254780787|r 388 IMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFY-----EMRARGA---RVTDIAVL 459 (884)
Q Consensus 388 v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~-----~~r~rg~---~~~d~~il 459 (884)
+.|.-+.||+||+-+|.+.++.-+..-|.|.+.-...+.+++..+.|+||||..++. .+..+.. .-+|++++
T Consensus 1 ivG~pNvGKSTL~N~L~g~~~~vs~~pgtTrd~~~~~~~~~~~~~~lvDtpGi~~~~~~~~~e~i~~~~~~~~~~d~vl~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHHCCCCEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 97989888999999995998646178982763478899629937999979874125641356789999998517871799
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 99836674023577789899709941561233124433200022100001320001234740363110024774112210
Q gi|254780787|r 460 VLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDA 539 (884)
Q Consensus 460 vv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (884)
|||+.+ ++ +....+..+...+.|+|+++||+|...........+. ..+.. +...+++||.+|+|+++|++.
T Consensus 81 vvD~~~-~~-~~l~~~~~l~~~~~p~ivV~NK~D~~~~~~~~~~~~~-----l~~~~--~~~ii~iSA~~g~Gi~~L~~~ 151 (158)
T cd01879 81 VVDATN-LE-RNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDK-----LSELL--GVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEECCH-HH-HHHHHHHHHHHCCCCEEEEEEHHHHHHHCCCHHHHHH-----HHHHC--CCCEEEEECCCCCCHHHHHHH
T ss_conf 977740-67-7689999998659988999402776552254667999-----99871--994899987789799999999
Q ss_pred HHC
Q ss_conf 000
Q gi|254780787|r 540 ILL 542 (884)
Q Consensus 540 ~~~ 542 (884)
+.-
T Consensus 152 i~e 154 (158)
T cd01879 152 IAE 154 (158)
T ss_pred HHH
T ss_conf 999
No 102
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.63 E-value=7.2e-15 Score=119.69 Aligned_cols=150 Identities=19% Similarity=0.231 Sum_probs=103.4
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCH--HHHH---HHHHHH----HHCC
Q ss_conf 038986236850446777886422210012310001214999517843888851661--5789---998666----4206
Q gi|254780787|r 384 PVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGH--AAFY---EMRARG----ARVT 454 (884)
Q Consensus 384 pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh--~~f~---~~r~rg----~~~~ 454 (884)
|.|+|.|--+.||+||+-+|.+.++.-+.--|.|.++-...+.+++..+.|+||||. .++. .+...+ ..+.
T Consensus 1 P~VaivG~pNvGKStL~N~L~g~~~~v~~~p~TTr~~~~~~~~~~~~~~~liDTpGi~~~~~~~~~~ie~~~~~~l~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEECCCCCCCCCCEEEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 97999889998899999999589860237587235743689998372768724886556747888899999999998357
Q ss_pred CCEEEEEECCCCCCHH---HHHHHHHHHH--CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 8059999836674023---5777898997--0994156123312443320002210000132000123474036311002
Q gi|254780787|r 455 DIAVLVLAADEEIMPQ---AIESINHAKA--ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKN 529 (884)
Q Consensus 455 d~~ilvv~~~~g~~~q---t~e~~~~~~~--~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (884)
|++++|+|+.+..... ....+..++. .+.|+|+++||+|......-....++ ..+. ....+++||.+
T Consensus 81 d~il~viD~~~~~~~~~~~~~~l~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~~~~~-------~~~~-~~~vi~ISA~~ 152 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEE-------EELE-GEEVLKISTLT 152 (168)
T ss_pred CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHH-------HHCC-CCCEEEEECCC
T ss_conf 768999968876784899999999987765258887999947534581007999999-------9708-99889998158
Q ss_pred CCCCCCCCCCHH
Q ss_conf 477411221000
Q gi|254780787|r 530 NLNLDKLLDAIL 541 (884)
Q Consensus 530 ~~~~~~~~~~~~ 541 (884)
|.|+++|++.+.
T Consensus 153 g~Gi~~L~~~i~ 164 (168)
T cd01897 153 EEGVDEVKNKAC 164 (168)
T ss_pred CCCHHHHHHHHH
T ss_conf 969999999999
No 103
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.62 E-value=9.6e-15 Score=118.82 Aligned_cols=161 Identities=26% Similarity=0.289 Sum_probs=124.6
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHH--HHHCCCCCCEECCCEEEEECCCCEEEEEECCCH----------HHHHHH
Q ss_conf 12553038986236850446777886422--210012310001214999517843888851661----------578999
Q gi|254780787|r 379 LDIRPPVVTIMGHVDHGKTSLLDAIRKAD--VAKGEIGGITQHIGAYQVAYQGKNITFLDTPGH----------AAFYEM 446 (884)
Q Consensus 379 ~~~R~pvv~v~ghvd~GKt~lld~~r~~~--~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh----------~~f~~~ 446 (884)
....++=|+|+|--+.||+||+-+|.+.+ +++..+ |.|...=-..+.+.+..+.|+||+|- |-|+..
T Consensus 168 ~~~~~iriaivGrPNvGKSTl~N~ll~~~r~ivs~~~-GtTrD~i~~~~~~~~~~~~~iDTaGirkk~k~~~~~e~~s~~ 246 (429)
T TIGR03594 168 EEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIA-GTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGIEKYSVL 246 (429)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCC-CCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf 4556526999748876546777776543332147999-863102687999999089999898876366423047799999
Q ss_pred HH-HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEE
Q ss_conf 86-66420680599998366740235777898997099415612331244332000221000013200012347403631
Q gi|254780787|r 447 RA-RGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEI 525 (884)
Q Consensus 447 r~-rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (884)
++ +-..-||++|||+|+.+|+..|-..-+.++.+.+.|+|||+||+|.... .. ....+.......-.+....+.+.+
T Consensus 247 ~t~~~i~~~dvvil~iD~~~~~~~qD~~i~~~i~~~~k~~ii~~NK~Dli~~-~~-~~~~~~~~i~~~l~~~~~~pI~fi 324 (429)
T TIGR03594 247 RTLKAIERADVVLLVLDATEGITEQDLRIAGLALEAGKALIIVVNKWDLVKD-EK-TREEFKKELRRKLPFLDFAPIVFI 324 (429)
T ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHCCCC-HH-HHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 9999987447799999766588488899999898739976999972230379-99-999999999985623689868997
Q ss_pred EECCCCCCCCCCCCHHC
Q ss_conf 10024774112210000
Q gi|254780787|r 526 SAKNNLNLDKLLDAILL 542 (884)
Q Consensus 526 ~~~~~~~~~~~~~~~~~ 542 (884)
||++|.|+..+++.+..
T Consensus 325 SA~~g~gi~kl~~~i~~ 341 (429)
T TIGR03594 325 SALTGQGVDKLLDAIDE 341 (429)
T ss_pred ECCCCCCHHHHHHHHHH
T ss_conf 34577899999999999
No 104
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.61 E-value=3.7e-15 Score=121.67 Aligned_cols=150 Identities=21% Similarity=0.230 Sum_probs=104.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 89862368504467778864222100123100012149995178438888516615789998666420680599998366
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADE 465 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~ 465 (884)
|+|+|.-..||||||.++......... -|..+....+...+..+.|.||+||+.|..|...-..-+|.+|+|+|+.+
T Consensus 2 i~ilG~~~vGKTsll~~l~~~~~~~~~---pTig~~~~~i~~~~~~l~iwDt~G~~~~~~~~~~y~~~a~~~i~V~D~t~ 78 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGEVVTTI---PTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSD 78 (158)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCC---CEECCCEEEEEECCEEEEEEECCCCCCCCHHHHHHHCCCCEEEEEEECCC
T ss_conf 999999999889999999539988744---56074089998488999999889972214489987276877689983798
Q ss_pred CC-CHHHHHHHH----HHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCH
Q ss_conf 74-023577789----8997099415612331244332000221000013200012347403631100247741122100
Q gi|254780787|r 466 EI-MPQAIESIN----HAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAI 540 (884)
Q Consensus 466 g~-~~qt~e~~~----~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (884)
-- .....+-+. .....++|++|+.||+|++.........+.+. ...........+++||++|+|++++++.+
T Consensus 79 ~~s~~~~~~~~~~~~~~~~~~~~piliv~NK~Dl~~~~~~~ei~~~l~---~~~~~~~~~~~~~~SAktg~gI~e~f~~L 155 (158)
T cd00878 79 RERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLG---LEKILGRRWHIQPCSAVTGDGLDEGLDWL 155 (158)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHH---HHHHCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 889999999999998660557653898760547665789999999985---87510799899999888792989999999
Q ss_pred H
Q ss_conf 0
Q gi|254780787|r 541 L 541 (884)
Q Consensus 541 ~ 541 (884)
.
T Consensus 156 ~ 156 (158)
T cd00878 156 L 156 (158)
T ss_pred H
T ss_conf 5
No 105
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=99.60 E-value=6.8e-16 Score=126.67 Aligned_cols=94 Identities=60% Similarity=1.054 Sum_probs=91.5
Q ss_pred CCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 66416777886377620000000000000000025665554200014665322100001222111123475555404312
Q gi|254780787|r 557 AEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILVVGDQWGKIRALFNDRGQGISKAVPSMPIEVLGLQGMPMAGDKFGVV 636 (884)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (884)
++|+++|+.+|+++|.++|++++.|+|+.||+++||..||+||.|+|..|..++.++|++|+.|.||+..|.+|+.|+.+
T Consensus 1 a~g~VlEs~~d~~~G~vatviV~~GtL~~Gd~~v~G~~~gkVr~l~d~~g~~v~~A~Ps~pV~I~G~~~~P~aGd~~~~v 80 (95)
T cd03702 1 AEGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTTYGKVRAMFDENGKRVKEAGPSTPVEILGLKGVPQAGDKFLVV 80 (95)
T ss_pred CEEEEEEEEECCCCCCEEEEEEECCEEECCCEEEECCEEEEEEEEECCCCCCCCEECCCCCEEEECCCCCCCCCCEEEEE
T ss_conf 94999999976998847999991580206989887863889999999999999888699859995789999999989995
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 42036689999999
Q gi|254780787|r 637 DSESRAREIAQYRQ 650 (884)
Q Consensus 637 ~~~~~~~~~~~~~~ 650 (884)
.++++|+.+..+|+
T Consensus 81 ~sek~Ak~~~~~r~ 94 (95)
T cd03702 81 ESEKEAKEIAEYRK 94 (95)
T ss_pred CCHHHHHHHHHHHC
T ss_conf 99999999999765
No 106
>COG1159 Era GTPase [General function prediction only]
Probab=99.59 E-value=1.5e-14 Score=117.49 Aligned_cols=160 Identities=26% Similarity=0.314 Sum_probs=117.5
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCC-CCCEECCCEEEEECCCCEEEEEECCCH----HHH----HHHHHH
Q ss_conf 12553038986236850446777886422210012-310001214999517843888851661----578----999866
Q gi|254780787|r 379 LDIRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEI-GGITQHIGAYQVAYQGKNITFLDTPGH----AAF----YEMRAR 449 (884)
Q Consensus 379 ~~~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~-ggitq~iga~~~~~~~~~~~~iDtPGh----~~f----~~~r~r 449 (884)
+..|+-.|||+|-=+.||+|||-.|-+..++---. -.-|.|.=-.-+..+...+.|+||||- .+| ...-.-
T Consensus 2 ~~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 2 MKFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred CCCEEEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 97368999998699876899998985682575159853114421479986984499984898887651788999999998
Q ss_pred HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 64206805999983667402357778989970994156123312443320002210000132000123474036311002
Q gi|254780787|r 450 GARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKN 529 (884)
Q Consensus 450 g~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (884)
+.+-+|++++|||++++..+--...++.++..++|.|+++||||+...... ...+.+ ...........+++||..
T Consensus 82 sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~--l~~~~~---~~~~~~~f~~ivpiSA~~ 156 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTV--LLKLIA---FLKKLLPFKEIVPISALK 156 (298)
T ss_pred HHCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHH--HHHHHH---HHHHHCCCCEEEEEECCC
T ss_conf 724575999998666568910799999776438986999984025784778--999999---998508830179951015
Q ss_pred CCCCCCCCCCHHCC
Q ss_conf 47741122100002
Q gi|254780787|r 530 NLNLDKLLDAILLQ 543 (884)
Q Consensus 530 ~~~~~~~~~~~~~~ 543 (884)
|.+++.|++.+.-+
T Consensus 157 g~n~~~L~~~i~~~ 170 (298)
T COG1159 157 GDNVDTLLEIIKEY 170 (298)
T ss_pred CCCHHHHHHHHHHH
T ss_conf 67889999999985
No 107
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=99.59 E-value=2.1e-14 Score=116.53 Aligned_cols=157 Identities=23% Similarity=0.264 Sum_probs=123.1
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH--HHHCCCCCCEECCCEEEEECCCCEEEEEECCC----------HHHHHHHHH
Q ss_conf 553038986236850446777886422--21001231000121499951784388885166----------157899986
Q gi|254780787|r 381 IRPPVVTIMGHVDHGKTSLLDAIRKAD--VAKGEIGGITQHIGAYQVAYQGKNITFLDTPG----------HAAFYEMRA 448 (884)
Q Consensus 381 ~R~pvv~v~ghvd~GKt~lld~~r~~~--~~~~e~ggitq~iga~~~~~~~~~~~~iDtPG----------h~~f~~~r~ 448 (884)
.-++=|+|+|--+.||+||+-+|.+.+ +++..+ |.|..-=-..+.+.+..+.||||.| .+-|+.+|+
T Consensus 450 ~~~~rIAIIGRPNVGKSTLiN~LlgeeR~IVs~ia-GTTRDsId~~~~~~g~~~~lIDTAGiRkk~k~~~~iE~~S~~rt 528 (714)
T PRK09518 450 SGLRRVALVGRPNVGKSSLLNQLTREERAVVNDLA-GTTRDPVDEIVNIDGKDWLFVDTAGIRRKQKKLTGAEYYASLRT 528 (714)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCEEEECCCC-CCEECEEEEEEEECCEEEEEEECHHCCCCCCCCCCCCHHHHHHH
T ss_conf 67735888669988789999999689758856889-85023055679999978999986001524432543227999999
Q ss_pred HH-HHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEE
Q ss_conf 66-42068059999836674023577789899709941561233124433200022100001320001234740363110
Q gi|254780787|r 449 RG-ARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISA 527 (884)
Q Consensus 449 rg-~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (884)
.- ..-||++||||||.+|+..|-.-.+.++...+.|+||++||.|+...... ..+.......-....+.+.+.+||
T Consensus 529 ~~aI~~adVvllviDA~~git~QD~~Ia~~i~~~gk~~IivvNKWDLv~~~~~---~~~~~~i~~~l~~~~~apiv~iSA 605 (714)
T PRK09518 529 QAAIERCELALILFDASQPISEQDLRVMSMAVDAGRALVLAFNKWDLMDEFRR---QRLEREIDTEFDRVMWAERVNISA 605 (714)
T ss_pred HHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECHHCCCHHHH---HHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 99886588999998677675289999999999859937999961430686689---999999997563689998899966
Q ss_pred CCCCCCCCCCCCHH
Q ss_conf 02477411221000
Q gi|254780787|r 528 KNNLNLDKLLDAIL 541 (884)
Q Consensus 528 ~~~~~~~~~~~~~~ 541 (884)
++|.+++.++..+.
T Consensus 606 ~~g~~v~kl~~~i~ 619 (714)
T PRK09518 606 KTGRHTNRLARAMD 619 (714)
T ss_pred CCCCCHHHHHHHHH
T ss_conf 78978899999999
No 108
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.58 E-value=2.1e-14 Score=116.46 Aligned_cols=156 Identities=19% Similarity=0.230 Sum_probs=110.2
Q ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCE--EEEECCCCEEEEEECCCHHHHHHHHHHHHHCCC
Q ss_conf 012553038986236850446777886422210012310001214--999517843888851661578999866642068
Q gi|254780787|r 378 DLDIRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGA--YQVAYQGKNITFLDTPGHAAFYEMRARGARVTD 455 (884)
Q Consensus 378 ~~~~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga--~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d 455 (884)
.++.|-.=|.++|.-..||||||-++.+.... .++-.+|. ..+...+..+.|-||+||+.|..+...-..-||
T Consensus 9 ~~~~~~~KililG~~~sGKTsll~~l~~~~~~-----~~~pT~G~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~y~~~a~ 83 (173)
T cd04154 9 KLKEREMRILILGLDNAGKTTILKKLLGEDID-----TISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTD 83 (173)
T ss_pred HCCCCCEEEEEECCCCCCHHHHHHHHCCCCCC-----CCCCCCCEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHCCCC
T ss_conf 54457318999989997889999998399989-----7267057778999989999999966886020058999722665
Q ss_pred CEEEEEECCCCCC-HHHHHH----HHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 0599998366740-235777----89899709941561233124433200022100001320001234740363110024
Q gi|254780787|r 456 IAVLVLAADEEIM-PQAIES----INHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNN 530 (884)
Q Consensus 456 ~~ilvv~~~~g~~-~qt~e~----~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (884)
.+|+|||+.+.-. .+..+- +......++|++|+.||+|++.+-......+.+.. ...........++||++|
T Consensus 84 ~ii~VvD~td~~~~~~~~~~l~~ll~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~l---~~~~~~~~~~~~~SAktG 160 (173)
T cd04154 84 ALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALEL---DKISSHHWRIQPCSAVTG 160 (173)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHH---HHCCCCCCEEEEEECCCC
T ss_conf 38999855657889999999999986354159847999876567778899999999868---744579829999889669
Q ss_pred CCCCCCCCCHH
Q ss_conf 77411221000
Q gi|254780787|r 531 LNLDKLLDAIL 541 (884)
Q Consensus 531 ~~~~~~~~~~~ 541 (884)
+|++++++.++
T Consensus 161 ~gI~e~f~wL~ 171 (173)
T cd04154 161 EGLLQGIDWLV 171 (173)
T ss_pred CCHHHHHHHHH
T ss_conf 29899999986
No 109
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.57 E-value=2.3e-14 Score=116.28 Aligned_cols=155 Identities=15% Similarity=0.201 Sum_probs=106.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHH--HHCCCCCCEECCCE--EEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 89862368504467778864222--10012310001214--999517843888851661578999866642068059999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADV--AKGEIGGITQHIGA--YQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVL 461 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~--~~~e~ggitq~iga--~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv 461 (884)
|.++|.-..||||||-+|....+ .......|+--+|. ..+...+..+.|.||+||+.|..|...-..-||.+|+||
T Consensus 2 ivilG~~~~GKTsll~~l~~~~~~~~~~~~~~~~~Tvg~~~~~i~~~~~~l~iwD~~Gqe~~~~l~~~y~~~a~~ii~Vv 81 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVI 81 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEE
T ss_conf 99999999888899998875036767776554035313268999989999999968987888789987428987899998
Q ss_pred ECCCCC-CHHHHHHHH----HHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 836674-023577789----899709941561233124433200022100001320001234740363110024774112
Q gi|254780787|r 462 AADEEI-MPQAIESIN----HAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKL 536 (884)
Q Consensus 462 ~~~~g~-~~qt~e~~~----~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (884)
|+.+-- ..+..+.+. +....++|++|+.||+|+++........++++... ......+...+++||++|+|++++
T Consensus 82 D~sd~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~~~~~~-~~~~~~~~~~~~~SAktG~Gv~e~ 160 (167)
T cd04160 82 DSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKA-EEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred ECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHH-HHHCCCCCEEEEEECCCCCCHHHH
T ss_conf 6686788999999999975110248962999970667665778999999999999-985469989999887829498999
Q ss_pred CCCHH
Q ss_conf 21000
Q gi|254780787|r 537 LDAIL 541 (884)
Q Consensus 537 ~~~~~ 541 (884)
++.+.
T Consensus 161 f~wL~ 165 (167)
T cd04160 161 IEWLV 165 (167)
T ss_pred HHHHH
T ss_conf 99996
No 110
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.56 E-value=9.9e-14 Score=111.89 Aligned_cols=151 Identities=25% Similarity=0.333 Sum_probs=118.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCC-CCCCEECCCEEEEECCCCEEEEEECCCHHHHH-----HHHH----HHHHC
Q ss_conf 03898623685044677788642221001-23100012149995178438888516615789-----9986----66420
Q gi|254780787|r 384 PVVTIMGHVDHGKTSLLDAIRKADVAKGE-IGGITQHIGAYQVAYQGKNITFLDTPGHAAFY-----EMRA----RGARV 453 (884)
Q Consensus 384 pvv~v~ghvd~GKt~lld~~r~~~~~~~e-~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~-----~~r~----rg~~~ 453 (884)
|+|+|.|-=+-||+||+-+|-++.++--+ --|.|-.---....|.+..+.+|||+|-+..+ ..+. ....-
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCEEEEEECCCCCCCCCCCCEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 78999899987589999887577026760699975577545069838607999789977688128999999999999976
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 68059999836674023577789899709941561233124433200022100001320001234740363110024774
Q gi|254780787|r 454 TDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNL 533 (884)
Q Consensus 454 ~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (884)
+|++|+|||+-.|+.|+-.+..++++..+.|+|+|+||+|-.. .+....++...+ -...+++||..|.|+
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~--~e~~~~efyslG--------~g~~~~ISA~Hg~Gi 153 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLK--AEELAYEFYSLG--------FGEPVPISAEHGRGI 153 (444)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCH--HHHHHHHHHHCC--------CCCCEEEEHHHCCCH
T ss_conf 7999999848878997899999999853998899997666730--456489998647--------898268425535698
Q ss_pred CCCCCCHHCCC
Q ss_conf 11221000023
Q gi|254780787|r 534 DKLLDAILLQA 544 (884)
Q Consensus 534 ~~~~~~~~~~~ 544 (884)
++|++.++...
T Consensus 154 ~dLld~v~~~l 164 (444)
T COG1160 154 GDLLDAVLELL 164 (444)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999756
No 111
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.55 E-value=7.2e-14 Score=112.82 Aligned_cols=160 Identities=23% Similarity=0.322 Sum_probs=128.6
Q ss_pred CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH-------HHCCCCC---CE--ECCCEEEEECCCCEEEEEECCCHHHHH
Q ss_conf 00125530389862368504467778864222-------1001231---00--012149995178438888516615789
Q gi|254780787|r 377 SDLDIRPPVVTIMGHVDHGKTSLLDAIRKADV-------AKGEIGG---IT--QHIGAYQVAYQGKNITFLDTPGHAAFY 444 (884)
Q Consensus 377 ~~~~~R~pvv~v~ghvd~GKt~lld~~r~~~~-------~~~e~gg---it--q~iga~~~~~~~~~~~~iDtPGh~~f~ 444 (884)
..++.+.+=|.|.|-++.||||.+-+|-..-. .+.+..+ .| +.+|...+. ++..+.+.|||||+.|-
T Consensus 4 ~~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~-~~~~v~LfgtPGq~RF~ 82 (187)
T COG2229 4 AANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD-EDTGVHLFGTPGQERFK 82 (187)
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEECCCCEEEC-CCCEEEEECCCCCHHHH
T ss_conf 00142010699984436640667887653456201033555544664550686324113775-86168996589707789
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCC-CCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEE
Q ss_conf 99866642068059999836674023577789899709-94156123312443320002210000132000123474036
Q gi|254780787|r 445 EMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAAD-VSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDV 523 (884)
Q Consensus 445 ~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~-~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (884)
-|..-.++-++.+|++||...+..---.+.++.+...+ +|++||+||.|...+|+.....+.+.... -..+.+
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~------~~~~vi 156 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLEL------LSVPVI 156 (187)
T ss_pred HHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCC------CCCCEE
T ss_conf 89998748764289999569996467899999885206887899950422577899899999997112------798644
Q ss_pred EEEECCCCCCCCCCCCHHCC
Q ss_conf 31100247741122100002
Q gi|254780787|r 524 EISAKNNLNLDKLLDAILLQ 543 (884)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~ 543 (884)
.+++..+++..+.|+.+++.
T Consensus 157 ~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 157 EIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred EEECCCCHHHHHHHHHHHHH
T ss_conf 34424634178999998730
No 112
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=99.54 E-value=6.1e-15 Score=120.14 Aligned_cols=94 Identities=53% Similarity=0.921 Sum_probs=91.2
Q ss_pred CCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 66416777886377620000000000000000025665554200014665322100001222111123475555404312
Q gi|254780787|r 557 AEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILVVGDQWGKIRALFNDRGQGISKAVPSMPIEVLGLQGMPMAGDKFGVV 636 (884)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (884)
++|+++|+.+|+++|.++|+++++|+|+.||++++|..+|+||.|++..|+.++.++|++|+.+.||+..|.+|+.|..+
T Consensus 1 a~g~ViEs~~d~g~G~vatviV~~GtL~~Gd~iv~G~~~gkVr~~~d~~g~~v~~a~Ps~pV~i~G~~~~P~aGd~~~~v 80 (95)
T cd03701 1 AEGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGTYGKIRTMVDENGKALLEAGPSTPVEILGLKDVPKAGDGVLVV 80 (95)
T ss_pred CEEEEEEEEECCCCCCEEEEEEECCCCCCCCEEEECCCEEEEEEEECCCCCCCCEECCCCCEEEECCCCCCCCCCEEEEE
T ss_conf 94999999976998837999993486555999997987878999999999999888699849995778999999999997
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 42036689999999
Q gi|254780787|r 637 DSESRAREIAQYRQ 650 (884)
Q Consensus 637 ~~~~~~~~~~~~~~ 650 (884)
.++++|+.+..++.
T Consensus 81 ~~e~~a~~~~~~r~ 94 (95)
T cd03701 81 ASEKEAKEIGSYRL 94 (95)
T ss_pred CCHHHHHHHHHHHC
T ss_conf 99999999998654
No 113
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.54 E-value=5.2e-14 Score=113.77 Aligned_cols=148 Identities=24% Similarity=0.249 Sum_probs=94.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEE--CCCEEEEECCCCEEEEEECCCH-----HHHHHHH---HHHHHCCC
Q ss_conf 898623685044677788642221001231000--1214999517843888851661-----5789998---66642068
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQ--HIGAYQVAYQGKNITFLDTPGH-----AAFYEMR---ARGARVTD 455 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq--~iga~~~~~~~~~~~~iDtPGh-----~~f~~~r---~rg~~~~d 455 (884)
|+|+|--+.||||||-+|.+.++.-+.--|-|- ++|.+.+ .++..+.|+||||- +.+. |. -|-..-||
T Consensus 3 VAiiG~pNvGKSTLlN~l~~~~~~V~~~pgTT~~~~~g~i~~-~~~~~i~~~DtpGi~~~~~~~~~-l~~~~l~~i~~ad 80 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRV-DDGRSFVVADIPGLIEGASEGKG-LGHRFLRHIERTR 80 (170)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEE-CCCCEEEEECCCCCCCCCCCCCC-HHHHHHHCCCCCC
T ss_conf 899899999899999999678760325666523744779993-69856999648864445546622-4899986133456
Q ss_pred CEEEEEECCCCCCH-HHHHHHH-HHHH-----CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 05999983667402-3577789-8997-----099415612331244332000221000013200012347403631100
Q gi|254780787|r 456 IAVLVLAADEEIMP-QAIESIN-HAKA-----ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAK 528 (884)
Q Consensus 456 ~~ilvv~~~~g~~~-qt~e~~~-~~~~-----~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (884)
++++|||+..+..+ ++.+.|. .+.. .+.|+|+++||+|+...+.. ...+... .........+++||+
T Consensus 81 vil~vvD~~~~~~~~~~~~~i~~~l~~~~~~~~~kp~ilv~NK~Dl~~~~~~--~~~~~~~----~~~~~~~~vi~iSA~ 154 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL--FELLKEL----LKELWGKPVFPISAL 154 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHCCCCEEEEEHHHCCCHHHH--HHHHHHH----HHHCCCCCEEEEECC
T ss_conf 1799998998789899999999999982744403865067762024283563--8999999----985699958999754
Q ss_pred CCCCCCCCCCCHH
Q ss_conf 2477411221000
Q gi|254780787|r 529 NNLNLDKLLDAIL 541 (884)
Q Consensus 529 ~~~~~~~~~~~~~ 541 (884)
+|.|++.|++.+.
T Consensus 155 ~g~gi~~L~~~I~ 167 (170)
T cd01898 155 TGEGLDELLRKLA 167 (170)
T ss_pred CCCCHHHHHHHHH
T ss_conf 7979999999999
No 114
>KOG0463 consensus
Probab=99.52 E-value=1.8e-14 Score=116.87 Aligned_cols=207 Identities=27% Similarity=0.359 Sum_probs=149.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCC--------------CCCEECCCE----EEE---------------EC-----
Q ss_conf 8986236850446777886422210012--------------310001214----999---------------51-----
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEI--------------GGITQHIGA----YQV---------------AY----- 427 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~--------------ggitq~iga----~~~---------------~~----- 427 (884)
|.|.|.||.||+|||.-|.+.....|.- .|-|-..|. |.+ .|
T Consensus 136 VAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvkIce 215 (641)
T KOG0463 136 VAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVKICE 215 (641)
T ss_pred EEEEECCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECC
T ss_conf 89971224772216766530443467227788776522310367544556620200254642158898888643134313
Q ss_pred -CCCEEEEEECCCHHHHHHHHHHH--HHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHH
Q ss_conf -78438888516615789998666--420680599998366740235777898997099415612331244332000221
Q gi|254780787|r 428 -QGKNITFLDTPGHAAFYEMRARG--ARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRM 504 (884)
Q Consensus 428 -~~~~~~~iDtPGh~~f~~~r~rg--~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~ 504 (884)
....+||||--|||-|...-.=| ..+-|...|.|-++-|+---|.||+.|+....+|.-|+++|||.+-++.-....
T Consensus 216 ~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPANiLqEtm 295 (641)
T KOG0463 216 DSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPANILQETM 295 (641)
T ss_pred CCCEEEEEEECCCHHHHHHEEEECCCCCCCCCEEEEECCCCCCEECCHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHH
T ss_conf 64226898861541552311441033678872589851666511144776545564268579999850558178999999
Q ss_pred HHHCCCCC--------------------CCC--CCCCCEEEEEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 00001320--------------------001--23474036311002477411221000023333420003486664167
Q gi|254780787|r 505 SLLKHDVF--------------------VES--MGGDILDVEISAKNNLNLDKLLDAILLQAEMLDLKTSINRKAEGIVV 562 (884)
Q Consensus 505 ~~~~~~~~--------------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (884)
.++..++. ... ...-++.+.+|.++|+|++.|..-+.+......+ +-..|+.--+.
T Consensus 296 Kll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLNlls~R~~~--~E~~PAeFQID 373 (641)
T KOG0463 296 KLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLNLLSLRRQL--NENDPAEFQID 373 (641)
T ss_pred HHHHHHHCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCC--CCCCCCCEEEC
T ss_conf 9999986287765075788515644786135862123540786156677838999998643744566--65797303522
Q ss_pred EEEEECCCCCCHHHHHHCCHHHCCCCCCCCCC
Q ss_conf 77886377620000000000000000025665
Q gi|254780787|r 563 EGKLDRGRGPVVTVLVQKGTLSKGNILVVGDQ 594 (884)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 594 (884)
+.+--.|.|+++...+..|+++..|+++.|..
T Consensus 374 D~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd 405 (641)
T KOG0463 374 DIYWVPGVGTVVSGTLLSGTIRLNDILLLGPD 405 (641)
T ss_pred CEEECCCCCEEEECCEEEEEEEECCEEEECCC
T ss_conf 24851785227642255215775227886678
No 115
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.50 E-value=1.4e-13 Score=110.89 Aligned_cols=151 Identities=19% Similarity=0.156 Sum_probs=108.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 38986236850446777886422210012310001214999517843888851661578999866642068059999836
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAAD 464 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~ 464 (884)
=|+|+|--+.||||||-++........ ..|.......+...+..+++-||+||+.|..|...-..-+|.+|+|||+.
T Consensus 17 KililG~~~sGKTsil~~l~~~~~~~~---~pT~G~~~~~i~~~~~~~~iwD~~G~e~~~~~~~~y~~~a~~ii~VvD~s 93 (174)
T cd04153 17 KVIIVGLDNAGKTTILYQFLLGEVVHT---SPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDST 93 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC---CCCCCCCEEEEEECCEEEEEEECCCCCCCCCHHHHHHCCCCEEEEEEECC
T ss_conf 999998999988999999973992771---67236046999978889999989998656622677705775379999767
Q ss_pred CCC-CHHHHHHHHHHH----HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 674-023577789899----709941561233124433200022100001320001234740363110024774112210
Q gi|254780787|r 465 EEI-MPQAIESINHAK----AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDA 539 (884)
Q Consensus 465 ~g~-~~qt~e~~~~~~----~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (884)
+-- .+...+.+.-+. ..++|++|+.||+|+++...... +.+................+||++|+|++++++-
T Consensus 94 d~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~~~~~~e---i~~~l~l~~~~~~~~~~~~~SAktG~Gv~e~f~w 170 (174)
T cd04153 94 DRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAE---ISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDW 170 (174)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHH---HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 8889999999999997261016982899995555655789999---9999747776359809999668589198999999
Q ss_pred HH
Q ss_conf 00
Q gi|254780787|r 540 IL 541 (884)
Q Consensus 540 ~~ 541 (884)
+.
T Consensus 171 La 172 (174)
T cd04153 171 IA 172 (174)
T ss_pred HH
T ss_conf 86
No 116
>TIGR00231 small_GTP small GTP-binding protein domain; InterPro: IPR005225 Proteins with a small GTP-binding domain include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others . In some proteins the domain occurs more than once. Among them there is a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.; GO: 0005525 GTP binding.
Probab=99.50 E-value=6.4e-14 Score=113.17 Aligned_cols=159 Identities=23% Similarity=0.335 Sum_probs=131.8
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCC-C--CCEECCCEEEEECCC-----------CEEEEEECCC---HHHH-
Q ss_conf 53038986236850446777886422210012-3--100012149995178-----------4388885166---1578-
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKADVAKGEI-G--GITQHIGAYQVAYQG-----------KNITFLDTPG---HAAF- 443 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~-g--gitq~iga~~~~~~~-----------~~~~~iDtPG---h~~f- 443 (884)
...-+.++||.++|||+|+..+........+. . |+|++.....+..++ ..+.++|||| |+.|
T Consensus 2 ~~~~~~~~g~~~~Gk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~d~~G~~~~~~~~ 81 (186)
T TIGR00231 2 KDIKIGIVGDPNVGKSTLLNRLLGNKGSITESGPTDGTTRDYVTESIEEDGKTITGATFQWGYKFNLLDTPGLHRQEDYD 81 (186)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCHHHHEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHH
T ss_conf 75058997347766045554454101200102323332000000113455802343431024278986257711355554
Q ss_pred ------HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf ------99986664206805999983667402357778989970994156123312443320002210000132000123
Q gi|254780787|r 444 ------YEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMG 517 (884)
Q Consensus 444 ------~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~ 517 (884)
.....+.+.++|++++|+++.+++++++.+.+.++...++|+++++||+|.....+................++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 161 (186)
T TIGR00231 82 ALRRLYYPEVLSSLEVLDLVILVLDVEDGLEKDTKEIIHHADKYGVPILLVGNKIDLKDEKPGYFVDLKPHLASLFAKLN 161 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHC
T ss_conf 45433223445444333333322211100102567787532212741699851336554675401000034555555423
Q ss_pred CCCEEEEEEECCCCCCCCCCCCH
Q ss_conf 47403631100247741122100
Q gi|254780787|r 518 GDILDVEISAKNNLNLDKLLDAI 540 (884)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~ 540 (884)
+....++.++..+.+++.+...+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ 184 (186)
T TIGR00231 162 GEPHFIPLSAETGKGIDSLFGLV 184 (186)
T ss_pred CCCCEEECCHHHHCCHHHHHHHH
T ss_conf 66401111001110045566654
No 117
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.48 E-value=2.9e-13 Score=108.66 Aligned_cols=150 Identities=18% Similarity=0.147 Sum_probs=104.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 89862368504467778864222100123100012149995178438888516615789998666420680599998366
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADE 465 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~ 465 (884)
|.|+|--..||||||-.+.........+ |.......+......+.+-||+||+.|..+...=..-||.+|+|||+.+
T Consensus 2 il~lG~~~~GKTsll~~~~~~~~~~~~p---Tig~~~~~i~~~~~~~~iwD~~G~e~~r~~~~~y~~~~~~ii~VvD~sd 78 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQLGEVVTTIP---TIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTD 78 (158)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCC---CCCCCEEEEEECCEEEEEEECCCCCCCCHHHHHHCCCCCEEEEEEECCC
T ss_conf 9999999998999999997099677578---4882469999898899999679862446278874667889999974578
Q ss_pred CCCH-----HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCH
Q ss_conf 7402-----35777898997099415612331244332000221000013200012347403631100247741122100
Q gi|254780787|r 466 EIMP-----QAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAI 540 (884)
Q Consensus 466 g~~~-----qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (884)
--.- +-.+.+..-...++|++|+.||+|++..-...... .........+......++||++|+|++++++.+
T Consensus 79 ~~~~~~~~~~l~~~l~~~~~~~~piliv~NK~Dl~~~~~~~~i~---~~l~l~~~~~~~~~~~~tSA~tG~gV~e~f~wL 155 (158)
T cd04151 79 RDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEIS---EKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWL 155 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHH---HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 78999999999999834653698199999766776577999999---998598741699689996787893999999998
Q ss_pred H
Q ss_conf 0
Q gi|254780787|r 541 L 541 (884)
Q Consensus 541 ~ 541 (884)
.
T Consensus 156 ~ 156 (158)
T cd04151 156 V 156 (158)
T ss_pred H
T ss_conf 5
No 118
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.47 E-value=4.3e-13 Score=107.50 Aligned_cols=150 Identities=17% Similarity=0.158 Sum_probs=105.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 89862368504467778864222100123100012149995178438888516615789998666420680599998366
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADE 465 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~ 465 (884)
|.++|--..||||||-++......... -|.......+...+..++|-||+||+.|-.|...-..-|+.+|+|||+.+
T Consensus 3 ililG~~~sGKTsll~~l~~~~~~~~~---pT~g~~~~~~~~~~~~l~iwD~~G~~~~r~l~~~Y~~~a~~iI~VvD~sd 79 (159)
T cd04150 3 ILMVGLDAAGKTTILYKLKLGEIVTTI---PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 79 (159)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCC---CCCCCCEEEEEECCEEEEEEECCCCCCCCHHHHHHCCCCCEEEEEEECCC
T ss_conf 999999999989999999729967758---96870179999898999999789972146567864768738999997777
Q ss_pred C-CCHHHHHHHH----HHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCH
Q ss_conf 7-4023577789----8997099415612331244332000221000013200012347403631100247741122100
Q gi|254780787|r 466 E-IMPQAIESIN----HAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAI 540 (884)
Q Consensus 466 g-~~~qt~e~~~----~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (884)
- -.....+.+. .-...++|++|+.||+|++.........+.+. ............++||++|+|+.++++.+
T Consensus 80 ~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~---l~~~~~~~~~i~~~SA~tG~Gv~e~f~WL 156 (159)
T cd04150 80 RERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLG---LHSLRNRNWYIQATCATSGDGLYEGLDWL 156 (159)
T ss_pred HHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHC---HHHHHCCCEEEEEEECCCCCCHHHHHHHH
T ss_conf 789999999999996235336982999997566778989999999968---66663798599982686793989999998
Q ss_pred H
Q ss_conf 0
Q gi|254780787|r 541 L 541 (884)
Q Consensus 541 ~ 541 (884)
.
T Consensus 157 ~ 157 (159)
T cd04150 157 S 157 (159)
T ss_pred H
T ss_conf 5
No 119
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.47 E-value=3.2e-13 Score=108.37 Aligned_cols=152 Identities=16% Similarity=0.107 Sum_probs=106.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 03898623685044677788642221001231000121499951784388885166157899986664206805999983
Q gi|254780787|r 384 PVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 384 pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
-=|.++|.-+.||||||-++........ ..|.......+......+++-||+||+.|..|...=..-||.+|+|||+
T Consensus 10 ~kililG~~~sGKTsil~~l~~~~~~~~---~pTvg~~~~~~~~~~~~l~iwD~~Gqe~~r~l~~~y~~~~~~iifVvDs 86 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKLGQSVTT---IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDS 86 (168)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCC---CCCCCCEEEEEEECCEEEEEEECCCCCCCCCHHHHHCCCCCEEEEEEEC
T ss_conf 8999999999998999999966998760---2626700799998988999998999974660657643788668999837
Q ss_pred CCCC-CHHHHH----HHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 6674-023577----78989970994156123312443320002210000132000123474036311002477411221
Q gi|254780787|r 464 DEEI-MPQAIE----SINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLD 538 (884)
Q Consensus 464 ~~g~-~~qt~e----~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (884)
.+-- ..+..+ .+......++|++|+.||+|++++.......+.+. ............++||++|+|+.++++
T Consensus 87 td~~~~~~~~~~l~~~l~~~~~~~~pilI~~NK~Dl~~~~~~~ei~~~l~---l~~~~~~~~~i~~~SA~tG~Gv~e~f~ 163 (168)
T cd04149 87 ADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLG---LTRIRDRNWYVQPSCATSGDGLYEGLT 163 (168)
T ss_pred CCHHHHHHHHHHHHHHHHCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHC---HHHHHCCCCEEEEEECCCCCCHHHHHH
T ss_conf 76789999999999997145227986999997566777889999999978---765517980999806878969799999
Q ss_pred CHH
Q ss_conf 000
Q gi|254780787|r 539 AIL 541 (884)
Q Consensus 539 ~~~ 541 (884)
.+.
T Consensus 164 WL~ 166 (168)
T cd04149 164 WLS 166 (168)
T ss_pred HHH
T ss_conf 986
No 120
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.46 E-value=3.6e-13 Score=108.02 Aligned_cols=161 Identities=26% Similarity=0.287 Sum_probs=124.4
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHH-HHHHCCCCCCEECCCEEEEECCCCEEEEEECCC----------HHHHHHHHHHH
Q ss_conf 5303898623685044677788642-221001231000121499951784388885166----------15789998666
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKA-DVAKGEIGGITQHIGAYQVAYQGKNITFLDTPG----------HAAFYEMRARG 450 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~-~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPG----------h~~f~~~r~rg 450 (884)
.+.=|||+|.-+.||+||+-+|.+- .+.-+..-|+|..-=-..+.+++..+.||||-| +|-|+.+|.-.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CCEEEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCEEEEEEHHHHH
T ss_conf 75089999278787058887750682598459998622033125899881899998778774664124268875054676
Q ss_pred -HHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECC
Q ss_conf -4206805999983667402357778989970994156123312443320002210000132000123474036311002
Q gi|254780787|r 451 -ARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKN 529 (884)
Q Consensus 451 -~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (884)
..-+|+++||+||.+|+..|-...+.++-..+.+.||++||-|....+. .....+.......-.+.+..+.+.+||.+
T Consensus 257 aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~-~~~~~~k~~i~~~l~~l~~a~i~~iSA~~ 335 (444)
T COG1160 257 AIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDE-ATMEEFKKKLRRKLPFLDFAPIVFISALT 335 (444)
T ss_pred HHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHH-HHHHHHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf 78656889999988878368899999999975897499997532578516-67999999999872213677279997047
Q ss_pred CCCCCCCCCCHHCC
Q ss_conf 47741122100002
Q gi|254780787|r 530 NLNLDKLLDAILLQ 543 (884)
Q Consensus 530 ~~~~~~~~~~~~~~ 543 (884)
+.++..+++++...
T Consensus 336 ~~~i~~l~~~i~~~ 349 (444)
T COG1160 336 GQGLDKLFEAIKEI 349 (444)
T ss_pred CCCHHHHHHHHHHH
T ss_conf 87727889999999
No 121
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.45 E-value=8.6e-13 Score=105.46 Aligned_cols=146 Identities=23% Similarity=0.319 Sum_probs=102.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE--EEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 89862368504467778864222100123100012149--9951784388885166157899986664206805999983
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY--QVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~--~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
|+++|--..||||||-++-.-..... .+..||.. .+...+..+.+.||+|++.|..|...-..-||.+|+|+|+
T Consensus 2 I~llG~~~~GKTsll~~~~~~~f~~~----~~pTig~~~~~i~~~~~~l~iwDt~G~e~~~~l~~~y~~~~~~ii~V~D~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSED----TIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC----CCCCCCEEEEEEEECCEEEEEEECCCHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 89999999869999999975999886----16732505899998999999997983587799999874686368751577
Q ss_pred CCCCCHHHHHHHH--------HHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 6674023577789--------89970994156123312443320002210000132000123474036311002477411
Q gi|254780787|r 464 DEEIMPQAIESIN--------HAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDK 535 (884)
Q Consensus 464 ~~g~~~qt~e~~~--------~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (884)
.+ +++.+.+. .....++|++|+.||+|++.........+.+. ..........+..+||++|+|+++
T Consensus 78 sd---~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~---~~~~~~~~~~~~~~SAktg~gI~e 151 (159)
T cd04159 78 AD---RTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMN---LKSITDREVSCYSISCKEKTNIDI 151 (159)
T ss_pred CC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHH---HHHHHCCCCEEEEEECCCCCCHHH
T ss_conf 87---889999999999998544348982898883567643478999999999---998734998799997968969899
Q ss_pred CCCCHH
Q ss_conf 221000
Q gi|254780787|r 536 LLDAIL 541 (884)
Q Consensus 536 ~~~~~~ 541 (884)
+++.+.
T Consensus 152 ~f~wL~ 157 (159)
T cd04159 152 VLDWLI 157 (159)
T ss_pred HHHHHH
T ss_conf 999996
No 122
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.44 E-value=1.1e-12 Score=104.76 Aligned_cols=149 Identities=14% Similarity=0.173 Sum_probs=104.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCC--EEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 898623685044677788642221001231000121--499951784388885166157899986664206805999983
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIG--AYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~ig--a~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
|.++|.=..||||||.++...+.... -+.-.+| ...+...+..++|.|++|++.|-++...=..-||.+|+|||+
T Consensus 2 Il~lGl~~sGKTtil~~l~~~~~~~~---~~~pT~G~~~~~~~~~~~~~~iwD~~G~~~~r~lw~~y~~~~~~iI~VvDs 78 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPENAQSQ---IIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDS 78 (162)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC---CCCCCCCEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHCCCCEEEEEEEC
T ss_conf 99999999988999999972898756---416850757899983998899998588744205589870567448999707
Q ss_pred CCCC-CHHHHHHHHHHH------HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 6674-023577789899------709941561233124433200022100001320001234740363110024774112
Q gi|254780787|r 464 DEEI-MPQAIESINHAK------AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKL 536 (884)
Q Consensus 464 ~~g~-~~qt~e~~~~~~------~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (884)
.+=- .....+.+..+. ..++||+|+.||+|.+.+.......+.+... .-........++||++|+|+++.
T Consensus 79 sd~~~~~~~~~~l~~ll~~~~~~~~~~PiLI~~NK~D~~~~~~~~ei~~~l~l~---~~~~~~~~i~~~SA~tG~Gi~e~ 155 (162)
T cd04157 79 SDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLE---NIKDKPWHIFASNALTGEGLDEG 155 (162)
T ss_pred CCHHHHHHHHHHHHHHHHCHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHCHH---HHCCCCEEEEEEECCCCCCHHHH
T ss_conf 638889999999999971765517984599998147788999999999885866---52489649999789789798999
Q ss_pred CCCH
Q ss_conf 2100
Q gi|254780787|r 537 LDAI 540 (884)
Q Consensus 537 ~~~~ 540 (884)
++-+
T Consensus 156 f~WL 159 (162)
T cd04157 156 VQWL 159 (162)
T ss_pred HHHH
T ss_conf 9998
No 123
>pfam00071 Ras Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices.
Probab=99.42 E-value=1.3e-12 Score=104.13 Aligned_cols=147 Identities=20% Similarity=0.242 Sum_probs=99.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 89862368504467778864222100123100012149995178--4388885166157899986664206805999983
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQG--KNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
|+|+|.-..|||||+.++.+......-.-+|.-..-...+..++ ..+.|.||||++.|..|+.....-+|++|||+|+
T Consensus 2 i~vvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~~~~ad~~iivfd~ 81 (162)
T pfam00071 2 LVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQERFRALRPLYYRGAQGFLLVYDI 81 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCCCEEECCC
T ss_conf 89999799779999999961999987477413556789999999999999997898720467889986257655042348
Q ss_pred CCCCCHHHHHHHHHH----HH---CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 667402357778989----97---09941561233124433200022100001320001234740363110024774112
Q gi|254780787|r 464 DEEIMPQAIESINHA----KA---ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKL 536 (884)
Q Consensus 464 ~~g~~~qt~e~~~~~----~~---~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (884)
.+ +.+.+.+... .. .++|+|++.||+|....+. +..+... .+...+ +...+++||++|.|++++
T Consensus 82 ~~---~~S~~~i~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~--i~~~e~~--~~a~~~--~~~y~e~Sak~g~gI~~~ 152 (162)
T pfam00071 82 TS---RDSFENVKKWLEEILRHADDNVPIVLVGNKCDLEDQRV--VSTEEGE--ALAKEL--GLPFMETSAKTNENVEEA 152 (162)
T ss_pred CC---HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCC--CCHHHHH--HHHHHH--CCEEEEECCCCCCCHHHH
T ss_conf 98---89999999999999985798862889975247465188--9999999--999980--997999737888299999
Q ss_pred CCCHH
Q ss_conf 21000
Q gi|254780787|r 537 LDAIL 541 (884)
Q Consensus 537 ~~~~~ 541 (884)
+..+.
T Consensus 153 F~~i~ 157 (162)
T pfam00071 153 FEELA 157 (162)
T ss_pred HHHHH
T ss_conf 99999
No 124
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.42 E-value=8e-13 Score=105.66 Aligned_cols=149 Identities=19% Similarity=0.210 Sum_probs=106.1
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEEC--CCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 8623685044677788642221001231000121499951--78438888516615789998666420680599998366
Q gi|254780787|r 388 IMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAY--QGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADE 465 (884)
Q Consensus 388 v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~--~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~ 465 (884)
|+|+.++|||||+.++.+......+...++.......+.. ....+.|+|||||+.|..++..-..-+|++|+|+|+.+
T Consensus 1 vvG~~~~GKSsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCC
T ss_conf 92949968899999997198887646871578999999999999999999858951156789999753579999986588
Q ss_pred CCCHHHHHH-----HHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCH
Q ss_conf 740235777-----898997099415612331244332000221000013200012347403631100247741122100
Q gi|254780787|r 466 EIMPQAIES-----INHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAI 540 (884)
Q Consensus 466 g~~~qt~e~-----~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (884)
.-.-+.++- +......++|+|++.||+|+........... ..........+.+++|++.+.|++++++.+
T Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 155 (157)
T cd00882 81 RESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEEL-----AEQLAKELGVPYFETSAKTGENVEELFEEL 155 (157)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHCCCCCHHHH-----HHHHHHHCCCEEEEECCCCCCCHHHHHHHH
T ss_conf 888999999999999975258984999985356154066889999-----999998789869998478883999999998
Q ss_pred H
Q ss_conf 0
Q gi|254780787|r 541 L 541 (884)
Q Consensus 541 ~ 541 (884)
.
T Consensus 156 ~ 156 (157)
T cd00882 156 A 156 (157)
T ss_pred H
T ss_conf 5
No 125
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.42 E-value=1.5e-12 Score=103.83 Aligned_cols=147 Identities=26% Similarity=0.268 Sum_probs=92.6
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHCCCCCCEEC--CCEEEEECCCCEEEEEECCC-----HHHHHHHH--HHHHHCCCCEE
Q ss_conf 86236850446777886422210012310001--21499951784388885166-----15789998--66642068059
Q gi|254780787|r 388 IMGHVDHGKTSLLDAIRKADVAKGEIGGITQH--IGAYQVAYQGKNITFLDTPG-----HAAFYEMR--ARGARVTDIAV 458 (884)
Q Consensus 388 v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~--iga~~~~~~~~~~~~iDtPG-----h~~f~~~r--~rg~~~~d~~i 458 (884)
+.|-=+.||||||-+|.+.++.-+--=|-|.+ +|.+.+. ++..+.|+|||| |.....+. .+-..-||+++
T Consensus 1 ivG~PNvGKSTL~N~Lt~~~~~v~~~pgTTr~~~~g~~~~~-~~~~i~~~DtpGi~~~~~~~~~~~~~~l~~~~~~d~il 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCCHHHHHHHHHCCCCEEECCCCCEEEEEEEEEEEC-CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf 96999888999999996899603078996761246799947-99669999578754573378789999998741088999
Q ss_pred EEEECCCCCCHHHHH---HHHHH--------------HHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCE
Q ss_conf 999836674023577---78989--------------9709941561233124433200022100001320001234740
Q gi|254780787|r 459 LVLAADEEIMPQAIE---SINHA--------------KAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDIL 521 (884)
Q Consensus 459 lvv~~~~g~~~qt~e---~~~~~--------------~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (884)
+|||+.++...+... .+..+ ...+.|+|+|+||+|+....... ... ...........
T Consensus 80 ~vvD~~~~~~~~~~~~~~~~~~i~~el~~~~~~~~~~~~~~kp~i~v~NK~Dl~~~~~~~--~~~----~~~~~~~~~~~ 153 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELE--EEL----VRELALEEGAE 153 (176)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECEECCCHHHHH--HHH----HHHHHHCCCCC
T ss_conf 999898765545445899999999999971156655543269719999686034700315--999----99997468995
Q ss_pred EEEEEECCCCCCCCCCCCHH
Q ss_conf 36311002477411221000
Q gi|254780787|r 522 DVEISAKNNLNLDKLLDAIL 541 (884)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~ 541 (884)
.+++||+++.|+++|++.+.
T Consensus 154 ii~iSA~~~~gi~~L~~~i~ 173 (176)
T cd01881 154 VVPISAKTEEGLDELIRAIY 173 (176)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89997778879999999999
No 126
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.41 E-value=2e-12 Score=102.96 Aligned_cols=154 Identities=16% Similarity=0.138 Sum_probs=107.7
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 53038986236850446777886422210012310001214999517843888851661578999866642068059999
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVL 461 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv 461 (884)
|.-=|+++|--..||||||-++........ -.|.......+...+..+++-||.|++.|-.+...=-.-||.+|+||
T Consensus 16 k~~kililGl~~sGKTsil~~l~~~~~~~~---~pTvg~~~~~~~~~~~~l~iwD~~Gqe~~r~lw~~yy~~~~giI~Vv 92 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVTT---IPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGIIFVV 92 (182)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCCCCCC---CCCCCCCEEEEEECCEEEEEEECCCCCCCCHHHHHCCCCCCEEEEEE
T ss_conf 747999996799889999999962997773---78688456999978889999989998454747876056764499999
Q ss_pred ECCCC-CCHHHHHHHHH----HHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 83667-40235777898----99709941561233124433200022100001320001234740363110024774112
Q gi|254780787|r 462 AADEE-IMPQAIESINH----AKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKL 536 (884)
Q Consensus 462 ~~~~g-~~~qt~e~~~~----~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (884)
|+.+- -..+..+.+.. -.-.++|++|+.||.|++.+.......+.+.. ...........++||++|+|++++
T Consensus 93 D~sd~~~~~~~~~~l~~~l~~~~~~~~piLi~~NK~Dl~~a~~~~ei~~~l~l---~~~~~~~~~i~~~SA~tG~Gi~e~ 169 (182)
T PTZ00133 93 DSNDRERIGDARQELEKMLAEDELRNAVLLVFANKQDLPNAMSTTEVTEKLGL---HSVRQRNWYIQGCCATTAQGLYEG 169 (182)
T ss_pred ECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCCCCCCCCCHHHHHHHHCH---HHHHCCCCEEEEEECCCCCCHHHH
T ss_conf 66787899999999999971442248859999706687788899999999695---556159958998257589498999
Q ss_pred CCCHH
Q ss_conf 21000
Q gi|254780787|r 537 LDAIL 541 (884)
Q Consensus 537 ~~~~~ 541 (884)
++.+.
T Consensus 170 f~wL~ 174 (182)
T PTZ00133 170 LDWLS 174 (182)
T ss_pred HHHHH
T ss_conf 99999
No 127
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.40 E-value=2e-12 Score=102.99 Aligned_cols=150 Identities=17% Similarity=0.125 Sum_probs=104.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 89862368504467778864222100123100012149995178438888516615789998666420680599998366
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADE 465 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~ 465 (884)
|+++|--..||||||-++........ -.|.......+......+.+-||.|++.|-.|...=-.-||.+|+|||+.+
T Consensus 16 ililG~~~~GKTsil~~l~~~~~~~~---~pTvg~~~~~~~~~~~~l~iwD~~Gqe~~r~l~~~Yy~~a~~iIfVvD~sd 92 (175)
T smart00177 16 ILMVGLDAAGKTTILYKLKLGESVTT---IPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSND 92 (175)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC---CCCCCCEEEEEEECCEEEEEEECCCCCCCCHHHHHHCCCCCEEEEEEECCC
T ss_conf 99998899998999999965997775---797881079999898999999899985455367775577618999986687
Q ss_pred C-CCHHHHHHHHH----HHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCH
Q ss_conf 7-40235777898----997099415612331244332000221000013200012347403631100247741122100
Q gi|254780787|r 466 E-IMPQAIESINH----AKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAI 540 (884)
Q Consensus 466 g-~~~qt~e~~~~----~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (884)
- -..+..+-+.. ..-.++|++|+.||+|.+.+-......+.+.. ...........++||++|+|++++++.+
T Consensus 93 ~~~~~~~~~~l~~~l~~~~~~~~piLil~NK~Dl~~~~~~~ei~~~l~l---~~~~~~~~~i~~~SA~tG~GI~e~f~wL 169 (175)
T smart00177 93 RDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGL---HSIRDRNWYIQPTCATSGDGLYEGLTWL 169 (175)
T ss_pred HHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCH---HHHCCCCEEEEEEECCCCCCHHHHHHHH
T ss_conf 7899999999999963153169869999845667678899999999686---6540797599982687896989999999
Q ss_pred H
Q ss_conf 0
Q gi|254780787|r 541 L 541 (884)
Q Consensus 541 ~ 541 (884)
.
T Consensus 170 ~ 170 (175)
T smart00177 170 S 170 (175)
T ss_pred H
T ss_conf 9
No 128
>KOG1143 consensus
Probab=99.38 E-value=4.2e-13 Score=107.56 Aligned_cols=224 Identities=23% Similarity=0.285 Sum_probs=144.8
Q ss_pred HHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHH------------------HHHCCCCCCEEC-CCEEE----
Q ss_conf 3221012410012553038986236850446777886422------------------210012310001-21499----
Q gi|254780787|r 368 GIFDVADSESDLDIRPPVVTIMGHVDHGKTSLLDAIRKAD------------------VAKGEIGGITQH-IGAYQ---- 424 (884)
Q Consensus 368 ~~~~~~~~~~~~~~R~pvv~v~ghvd~GKt~lld~~r~~~------------------~~~~e~ggitq~-iga~~---- 424 (884)
......++......| |.|+|.+|.||+|||.-|..-. ++.|....|.-. ||+-.
T Consensus 155 LVRKvPd~QqfievR---vAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~v 231 (591)
T KOG1143 155 LVRKVPDSQQFIEVR---VAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKV 231 (591)
T ss_pred HHHHCCCCCCCEEEE---EEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEHHCCHHHHCCCCCCCCCHHCCCCCCCCCC
T ss_conf 331288742304899---99852765672236655410531478870663011063654057632001010053653430
Q ss_pred E------------ECCCCEEEEEECCCHHHHHHHHHHHH--HCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 9------------51784388885166157899986664--206805999983667402357778989970994156123
Q gi|254780787|r 425 V------------AYQGKNITFLDTPGHAAFYEMRARGA--RVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAIN 490 (884)
Q Consensus 425 ~------------~~~~~~~~~iDtPGh~~f~~~r~rg~--~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~n 490 (884)
+ ......+||||--||.-|...-.-|+ ..-+.|.|||+|+.|+---|.||+.++.+.++||-|.++
T Consensus 232 VNY~~~~taEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvt 311 (591)
T KOG1143 232 VNYAQNMTAEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVT 311 (591)
T ss_pred CCHHHCCCHHHHHHHHCCEEEEEECCCCHHHHEEEEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf 02232045999874102338876504422313045220036798627999986888765408888899971787699998
Q ss_pred CCCCCCCC-CCHHHHHHHC--------------------CCCCC-CCCCCCCEEEEEEECCCCCCCCCCCCHHCCCCC--
Q ss_conf 31244332-0002210000--------------------13200-012347403631100247741122100002333--
Q gi|254780787|r 491 KIDKLGAD-PQKVRMSLLK--------------------HDVFV-ESMGGDILDVEISAKNNLNLDKLLDAILLQAEM-- 546 (884)
Q Consensus 491 k~d~~~~~-~~~~~~~~~~--------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 546 (884)
|+|...-. .++...++.. .-..+ ...+.-++.+.+|.++|++.+.+.-.+....-.
T Consensus 312 K~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn~Lsp~~~ 391 (591)
T KOG1143 312 KMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLNCLSPAGT 391 (591)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 40123632178999999988742376326348505078878888753688114899850476326699999864387677
Q ss_pred -CCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCCCCCCC
Q ss_conf -342000348666416777886377620000000000000000025665
Q gi|254780787|r 547 -LDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILVVGDQ 594 (884)
Q Consensus 547 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 594 (884)
.+....-..++.-.+-|.+--.-.|.|....+..|.+..|+.++.|..
T Consensus 392 ~~e~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~ 440 (591)
T KOG1143 392 AEERIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPM 440 (591)
T ss_pred HHHHHHHHCCCCEEEHHHEECCCCCCCCCCCEEEECEECCCCEEEEECC
T ss_conf 2779998667622667470567765650311542232326860575047
No 129
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.37 E-value=4.7e-12 Score=100.44 Aligned_cols=149 Identities=19% Similarity=0.231 Sum_probs=102.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE--EEECCC-CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 89862368504467778864222100123100012149--995178-438888516615789998666420680599998
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY--QVAYQG-KNITFLDTPGHAAFYEMRARGARVTDIAVLVLA 462 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~--~~~~~~-~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~ 462 (884)
|+++|--..||||||-++.+..... .+..||+. .+..++ ..+++-||.|.+.|.+|...=..-+|.+|+|+|
T Consensus 2 ivilG~~~~GKTsil~r~~~~~~~~-----~~pTig~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~y~~~a~~iI~V~D 76 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAELVT-----TIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCC-----CCCCCCEEEEEEEECCEEEEEEEECCCCCCCCHHHHHHHCCCCEEEEEEE
T ss_conf 9999999999999999995698777-----57761503899998998999999789862474158877456778999985
Q ss_pred CCCCCC-HHHHHHHHH-HH---HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 366740-235777898-99---7099415612331244332000221000013200012347403631100247741122
Q gi|254780787|r 463 ADEEIM-PQAIESINH-AK---AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLL 537 (884)
Q Consensus 463 ~~~g~~-~qt~e~~~~-~~---~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (884)
+.+--. .+..+.+.. ++ ..++|++|+.||+|++...........+....... .......++||++|+|+++++
T Consensus 77 ~td~~~~~~~~~~~~~~l~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~~~~~~~--~~~~~i~~~SAktGegi~e~f 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCS--DRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH--CCCCEEEEEECCCCCCHHHHH
T ss_conf 686788787999999998663537874999998633656679999999986999985--399999986688495999999
Q ss_pred CCHH
Q ss_conf 1000
Q gi|254780787|r 538 DAIL 541 (884)
Q Consensus 538 ~~~~ 541 (884)
+.+.
T Consensus 155 ~~la 158 (160)
T cd04156 155 RKLA 158 (160)
T ss_pred HHHH
T ss_conf 9985
No 130
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.37 E-value=1.8e-12 Score=103.33 Aligned_cols=149 Identities=19% Similarity=0.203 Sum_probs=98.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE--EEE-----CCCCEEEEEECCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 89862368504467778864222100123100012149--995-----17843888851661578999866642068059
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY--QVA-----YQGKNITFLDTPGHAAFYEMRARGARVTDIAV 458 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~--~~~-----~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~i 458 (884)
|.++|--..||||||..+...... ..+..||+. .+. .....+.|-||.|++.|-.|...=..-+|.+|
T Consensus 6 IvilG~~~~GKTsil~r~~~~~f~-----~~~pTiG~~~~~~~~~~~~~~~v~l~iwDtaGqe~~r~l~~~Y~r~a~g~i 80 (183)
T cd04152 6 IVMLGLDSAGKTTVLYRLKFNEFV-----NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC-----CCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCCCEEHHHHHCCCCEEE
T ss_conf 999999999889999999649867-----768703557899999616786679999978987345100876746786789
Q ss_pred EEEECCCCC-CHHHHHHH----HHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 999836674-02357778----9899709941561233124433200022100001320001234740363110024774
Q gi|254780787|r 459 LVLAADEEI-MPQAIESI----NHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNL 533 (884)
Q Consensus 459 lvv~~~~g~-~~qt~e~~----~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (884)
+|+|+.+-- ..+..+-+ .+....++|++|+.||+|++...........+..... .......+.++||++|+|+
T Consensus 81 ~V~D~td~~~~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~ei~~~l~l~~~--~~~~~~~i~~tSA~tG~gI 158 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHEL--SASTPWHVQPACAIIGEGL 158 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHH--HCCCCCEEEEEECCCCCCH
T ss_conf 99967768899999999999973212379629999866777668788999999719998--6669989997279979698
Q ss_pred CCCCCCHH
Q ss_conf 11221000
Q gi|254780787|r 534 DKLLDAIL 541 (884)
Q Consensus 534 ~~~~~~~~ 541 (884)
.++++.+.
T Consensus 159 ~e~f~~L~ 166 (183)
T cd04152 159 QEGLEKLY 166 (183)
T ss_pred HHHHHHHH
T ss_conf 99999999
No 131
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.37 E-value=6.5e-12 Score=99.43 Aligned_cols=151 Identities=19% Similarity=0.211 Sum_probs=108.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 89862368504467778864222100123100012149995178438888516615789998666420680599998366
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADE 465 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~ 465 (884)
|.++|-=..||||||-++........- -|.......+...+..+++.||.|++.|-.|-..--.-||.+|+|||+.+
T Consensus 2 IlilGl~~sGKTtil~~l~~~~~~~~~---pT~G~~~~~i~~~~~~l~iwD~gG~~~~r~~w~~Yy~~~~~iIfVvDssd 78 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQDEFMQPI---PTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSH 78 (169)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCC---CCCCCCEEEEEECCEEEEEEECCCCCCCCHHHHHHCCCCCEEEEEEECCH
T ss_conf 999998999889999999579968977---86881669999898899999899972446367875557627999998630
Q ss_pred -CCCHHHHHHH----HHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCH
Q ss_conf -7402357778----98997099415612331244332000221000013200012347403631100247741122100
Q gi|254780787|r 466 -EIMPQAIESI----NHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAI 540 (884)
Q Consensus 466 -g~~~qt~e~~----~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (884)
.-.....+.| ....-.++|++|+.||+|++++.......+.+..... ..+......++||++|+|++++++.+
T Consensus 79 ~~~~~ea~~~l~~ll~~~~~~~~piLIlaNK~Dl~~~~~~~ei~~~l~l~~~--~~~~~~~i~~~SA~tG~Gi~e~~~WL 156 (169)
T cd04158 79 RDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKL--CCGRSWYIQGCDARSGMGLYEGLDWL 156 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCHHH--CCCCCEEEEEEECCCCCCHHHHHHHH
T ss_conf 6779999999999971275379849999735567779899999998570545--26996299955572795989999999
Q ss_pred H
Q ss_conf 0
Q gi|254780787|r 541 L 541 (884)
Q Consensus 541 ~ 541 (884)
.
T Consensus 157 ~ 157 (169)
T cd04158 157 S 157 (169)
T ss_pred H
T ss_conf 9
No 132
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.36 E-value=6.3e-12 Score=99.53 Aligned_cols=155 Identities=17% Similarity=0.147 Sum_probs=110.2
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCC--EEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 55303898623685044677788642221001231000121--4999517843888851661578999866642068059
Q gi|254780787|r 381 IRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIG--AYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAV 458 (884)
Q Consensus 381 ~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~ig--a~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~i 458 (884)
.|..=|.|+|==..||||||-+|.... ...++-.+| ...+...+..++|.|+.||+.|-.+-..-..-||.+|
T Consensus 17 ~k~~kIlilGld~aGKTTil~~l~~~~-----~~~~~PT~Gfn~e~i~~~~~~~~~wDvgG~~~~R~lW~~Y~~~~~~iI 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDR-----LAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHCCC-----CCEECCCCCCCEEEEEECCEEEEEEECCCCCCCCCCHHHHHHCCCEEE
T ss_conf 770489999069998899999980799-----531526558745999989999999989998455543888843113799
Q ss_pred EEEECCC-CCCHHHHHHHHH----HHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCC--------CCCCCCEEEEE
Q ss_conf 9998366-740235777898----9970994156123312443320002210000132000--------12347403631
Q gi|254780787|r 459 LVLAADE-EIMPQAIESINH----AKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVE--------SMGGDILDVEI 525 (884)
Q Consensus 459 lvv~~~~-g~~~qt~e~~~~----~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 525 (884)
+|||+.| .-..+..+.+.. ..-.++|++|..||.|.+.+.......+.+....... .........++
T Consensus 92 fVVDssD~~r~~eak~~L~~lL~~~~l~~~PlLIlaNK~Dl~~a~~~~ei~~~L~L~~~~~~~~~~~~~~~~r~~~i~~c 171 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMC 171 (190)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 99977677899999999999985550069808999866677679899999988398420155443345457761499965
Q ss_pred EECCCCCCCCCCCCH
Q ss_conf 100247741122100
Q gi|254780787|r 526 SAKNNLNLDKLLDAI 540 (884)
Q Consensus 526 ~~~~~~~~~~~~~~~ 540 (884)
||++|+|+.++++-+
T Consensus 172 sA~tG~Gl~egl~WL 186 (190)
T cd00879 172 SVVKRQGYGEAFRWL 186 (190)
T ss_pred EEECCCCHHHHHHHH
T ss_conf 506796828999999
No 133
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.36 E-value=1.3e-11 Score=97.43 Aligned_cols=146 Identities=27% Similarity=0.302 Sum_probs=98.6
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEC--CCEEEEECCCCEEEEEECCC---------HHHHHHHHHHH
Q ss_conf 53038986236850446777886422210012310001--21499951784388885166---------15789998666
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQH--IGAYQVAYQGKNITFLDTPG---------HAAFYEMRARG 450 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~--iga~~~~~~~~~~~~iDtPG---------h~~f~~~r~rg 450 (884)
--|+|++.|--+.||||||-+|.+.++...-.=.-|-. .+...++ ++..+.|.||+| -+||.+.-..
T Consensus 188 ~~p~ValVGYTNAGKSTL~n~Lt~~~~~~~d~lFaTLd~t~r~~~l~-~~~~~ll~DTVGFI~~LP~~Li~aF~sTLee- 265 (351)
T TIGR03156 188 GVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLP-DGGEVLLTDTVGFIRDLPHELVAAFRATLEE- 265 (351)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCEEECC-CCCEEEEEECCCHHHHCCHHHHHHHHHHHHH-
T ss_conf 99769996678877899999985177641034313536732048879-9976999815005630886799999999999-
Q ss_pred HHCCCCEEEEEECCC-CCCHHHHHHHHHHHHC---CCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEE
Q ss_conf 420680599998366-7402357778989970---994156123312443320002210000132000123474036311
Q gi|254780787|r 451 ARVTDIAVLVLAADE-EIMPQAIESINHAKAA---DVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEIS 526 (884)
Q Consensus 451 ~~~~d~~ilvv~~~~-g~~~qt~e~~~~~~~~---~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (884)
+.-||+.++|||+-+ ....|-.-...+++.. +.|.|+++||||+...... ..+.. . ....+.+|
T Consensus 266 ~~~aDlllhVvD~S~~~~~~~~~~v~~~L~elg~~~~p~i~V~NKiD~~~~~~~---~~~~~------~---~~~~v~IS 333 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEEVLEELGAEDIPQLLVYNKIDLLDEPRI---ERLEE------G---YPEAVFVS 333 (351)
T ss_pred HHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHHCCCHHHH---HHHHH------C---CCCEEEEE
T ss_conf 985989999805888478999999999999769999988999967015895778---99873------7---99879996
Q ss_pred ECCCCCCCCCCCCHH
Q ss_conf 002477411221000
Q gi|254780787|r 527 AKNNLNLDKLLDAIL 541 (884)
Q Consensus 527 ~~~~~~~~~~~~~~~ 541 (884)
|++|+|++.|++.+.
T Consensus 334 A~~g~gi~~L~~~I~ 348 (351)
T TIGR03156 334 AKTGEGLDLLLEAIA 348 (351)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 899989999999999
No 134
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.35 E-value=1.4e-11 Score=97.27 Aligned_cols=141 Identities=26% Similarity=0.298 Sum_probs=93.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHH-------HHHHHHHHCCCCEE
Q ss_conf 89862368504467778864222100123100012149995178438888516615789-------99866642068059
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFY-------EMRARGARVTDIAV 458 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~-------~~r~rg~~~~d~~i 458 (884)
|++.|--+.||||||-+|.+++..-+.--+-|.+--.-.+++++..+.|+||||.-... +.-..-+.-||+++
T Consensus 3 V~LVG~PN~GKSTLln~LT~a~~~v~~ypfTT~~pi~g~~~~~~~~iqlvDtPGli~~a~~g~g~g~~~l~~~r~aD~il 82 (233)
T cd01896 3 VALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLIL 82 (233)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCEEE
T ss_conf 99999999999999999978995436989787574777999899899999673002463333206899999987589999
Q ss_pred EEEECCCCCCH---------------------------------------------HHHHHHHHHHHCC-----------
Q ss_conf 99983667402---------------------------------------------3577789899709-----------
Q gi|254780787|r 459 LVLAADEEIMP---------------------------------------------QAIESINHAKAAD----------- 482 (884)
Q Consensus 459 lvv~~~~g~~~---------------------------------------------qt~e~~~~~~~~~----------- 482 (884)
+|||+.+.... +.+ -.+++.++
T Consensus 83 ~VvD~~~~~~~~~~i~~eLe~~gi~l~~~~~~v~i~~~~~~gi~i~~~~~~~~~~~~~v--~~il~e~~i~~a~v~i~~~ 160 (233)
T cd01896 83 MVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTI--KAILREYKIHNADVLIRED 160 (233)
T ss_pred EEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCHHHH--HHHHHHHCCCCCEEEECCC
T ss_conf 99847982667899999998605110357876257771358678604566666888999--9999982767643786057
Q ss_pred ----------------CCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHH
Q ss_conf ----------------94156123312443320002210000132000123474036311002477411221000
Q gi|254780787|r 483 ----------------VSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAIL 541 (884)
Q Consensus 483 ----------------~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (884)
.|.|+++||+|.+... ++.. +......+++||..|.|+++|.+.+.
T Consensus 161 ~t~dd~~d~i~~n~~y~P~i~V~NKiDl~~~e------e~~~-------~~~~~~~i~ISA~~g~gld~L~~~I~ 222 (233)
T cd01896 161 ITVDDLIDVIEGNRVYIPCLYVYNKIDLISIE------ELDL-------LARQPNSVVISAEKGLNLDELKERIW 222 (233)
T ss_pred CCHHHHHHHHHCCCCCCCEEEEEECCCCCCHH------HHHH-------HHCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 88889899873576767379999740369989------9998-------64679859998888989899999999
No 135
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.34 E-value=1.4e-11 Score=97.17 Aligned_cols=156 Identities=22% Similarity=0.257 Sum_probs=115.3
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH-HH-HCCCCCCEECCCEEEEECCCCEEEEEECCCH----------HHHHH----
Q ss_conf 53038986236850446777886422-21-0012310001214999517843888851661----------57899----
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKAD-VA-KGEIGGITQHIGAYQVAYQGKNITFLDTPGH----------AAFYE---- 445 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~~-~~-~~e~ggitq~iga~~~~~~~~~~~~iDtPGh----------~~f~~---- 445 (884)
..|=||++|--+.||+||+-+|.+.. .+ -+--=|-||.|-.|.+... +.|+|-||. +.+..
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEECCC---EEEEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 8967999816866689999999678635565799985423679983585---7998179954032899999999999999
Q ss_pred -HHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC-CHHHHHHHCCCCCCCCCCCCCEEE
Q ss_conf -986664206805999983667402357778989970994156123312443320-002210000132000123474036
Q gi|254780787|r 446 -MRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADP-QKVRMSLLKHDVFVESMGGDILDV 523 (884)
Q Consensus 446 -~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 523 (884)
+..|-. ...++|+||+.|++...-.|-+..++..++|++|++||+|+..... .+......+.....-.|... .+
T Consensus 100 YL~~R~~--L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~--~~ 175 (200)
T COG0218 100 YLEKRAN--LKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQW--VV 175 (200)
T ss_pred HHHHCHH--HEEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCE--EE
T ss_conf 9963522--2489999978999868799999999975998699997110377467888999999984689886643--99
Q ss_pred EEEECCCCCCCCCCCCHHCCC
Q ss_conf 311002477411221000023
Q gi|254780787|r 524 EISAKNNLNLDKLLDAILLQA 544 (884)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~ 544 (884)
..|+.++.|++++...+..+-
T Consensus 176 ~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 176 LFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred EEECCCCCCHHHHHHHHHHHH
T ss_conf 986545448999999999986
No 136
>pfam01926 MMR_HSR1 GTPase of unknown function.
Probab=99.32 E-value=1.4e-11 Score=97.16 Aligned_cols=97 Identities=24% Similarity=0.375 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHHHHH-HCCCCCCEECCCEEEEECCCCEEEEEECCCH--------HHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 044677788642221-0012310001214999517843888851661--------5789998666420680599998366
Q gi|254780787|r 395 GKTSLLDAIRKADVA-KGEIGGITQHIGAYQVAYQGKNITFLDTPGH--------AAFYEMRARGARVTDIAVLVLAADE 465 (884)
Q Consensus 395 GKt~lld~~r~~~~~-~~e~ggitq~iga~~~~~~~~~~~~iDtPGh--------~~f~~~r~rg~~~~d~~ilvv~~~~ 465 (884)
||+||+-+|.+.+++ -+.--|.|+++-.+.+.+.+..+.|+||||- ..+...-.+...-+|++++|||+.+
T Consensus 1 GKSsLiN~L~~~~~~~v~~~~gtT~~~~~~~~~~~~~~i~liDTPGi~~~~~~~~~~~~~~~~~~~~~~d~il~viD~~~ 80 (106)
T pfam01926 1 GKSTLINALTGKKRAIVSDYPGTTRDPNEGRVELDGKQIILVDTPGIIEGASKGEGELGNRTLEAIEEADLILHVVDASE 80 (106)
T ss_pred CHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 91279999978885555288998846355899889988999837873226504678889999972345737999999999
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 74023577789899709941561233
Q gi|254780787|r 466 EIMPQAIESINHAKAADVSIIVAINK 491 (884)
Q Consensus 466 g~~~qt~e~~~~~~~~~~p~iva~nk 491 (884)
|+..+..+.+..++..+.|+|+++||
T Consensus 81 ~~~~~d~~~~~~l~~~~~p~iiv~NK 106 (106)
T pfam01926 81 GLTEEDLEILDLLLELGKPVILVLNK 106 (106)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99989999999999869988999939
No 137
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.32 E-value=2.7e-11 Score=95.20 Aligned_cols=150 Identities=18% Similarity=0.157 Sum_probs=107.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCE--EEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 8986236850446777886422210012310001214--99951784388885166157899986664206805999983
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGA--YQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga--~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
|.|+|==+.||||||-+|..... ..++-.+|. ..+...+..++|.|..||..|-.+-.+=-.-||.+|+|||+
T Consensus 2 ililGLd~aGKTTil~~l~~~~~-----~~~~PT~G~~~~~~~~~~~~l~~~DlgG~~~~R~lW~~Y~~~~~gIIfVVDs 76 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGEIP-----KKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred EEEEEECCCCHHHHHHHHCCCCC-----CCCCCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 89990089988999999828998-----7650877731799998999999998998778889999873477657999855
Q ss_pred CCC-CCHHHHHHHHHHH----HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC------
Q ss_conf 667-4023577789899----70994156123312443320002210000132000123474036311002477------
Q gi|254780787|r 464 DEE-IMPQAIESINHAK----AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLN------ 532 (884)
Q Consensus 464 ~~g-~~~qt~e~~~~~~----~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 532 (884)
.|- -..+..+.+..+- -.++|+.|..||.|++.+-......+.+................++||++|+|
T Consensus 77 sD~~rl~eak~~L~~lL~~~~l~~~PiLIlaNKqDl~~a~~~~ei~~~L~L~~l~~~~~~~~~I~~csA~tG~G~~~~~~ 156 (167)
T cd04161 77 SDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPS 156 (167)
T ss_pred CCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCHHHCCCCCCEEEEEECEEECCCCCCCCCC
T ss_conf 75889999999999996588778995999988657615899999998819742408998637999576444888787663
Q ss_pred CCCCCCCH
Q ss_conf 41122100
Q gi|254780787|r 533 LDKLLDAI 540 (884)
Q Consensus 533 ~~~~~~~~ 540 (884)
+.++++-+
T Consensus 157 l~eGl~WL 164 (167)
T cd04161 157 IVEGLRWL 164 (167)
T ss_pred HHHHHHHH
T ss_conf 15499898
No 138
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.31 E-value=2.1e-11 Score=95.93 Aligned_cols=146 Identities=23% Similarity=0.320 Sum_probs=96.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 89862368504467778864222100123100012149995178--4388885166157899986664206805999983
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQG--KNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
|+|+|.-..|||+|+..+.+........-.|........+..++ ..+.|.||+|++.|..|+..-..-+|++|||.|+
T Consensus 3 i~vvG~~~vGKTsli~~~~~~~f~~~~~~Tig~d~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~~d~~ilv~d~ 82 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDI 82 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHCCEEEEECCC
T ss_conf 99999699689999999970999998488666479999999999999999997898265778899997541275672448
Q ss_pred CCCCCHHHHHHHH----HHHH---CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 6674023577789----8997---09941561233124433200022100001320001234740363110024774112
Q gi|254780787|r 464 DEEIMPQAIESIN----HAKA---ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKL 536 (884)
Q Consensus 464 ~~g~~~qt~e~~~----~~~~---~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (884)
.+ +++.+.+. .++. .++|+|++.||+|+..... +..+... .+...+ +...+.+||++|+|++++
T Consensus 83 ~~---~~Sf~~~~~~~~~i~~~~~~~~~iilvgnK~DL~~~~~--v~~~~~~--~~a~~~--~~~~~e~SAk~~~~i~~~ 153 (159)
T cd00154 83 TN---RESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQ--VSTEEAQ--QFAKEN--GLLFFETSAKTGENVEEL 153 (159)
T ss_pred CC---HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHCCC--CCHHHHH--HHHHHC--CCEEEEECCCCCCCHHHH
T ss_conf 98---89999999999999986898882699997456301168--9999999--999986--997999876888198999
Q ss_pred CCCH
Q ss_conf 2100
Q gi|254780787|r 537 LDAI 540 (884)
Q Consensus 537 ~~~~ 540 (884)
++.+
T Consensus 154 F~~i 157 (159)
T cd00154 154 FQSL 157 (159)
T ss_pred HHHH
T ss_conf 9998
No 139
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.30 E-value=3.1e-11 Score=94.80 Aligned_cols=144 Identities=26% Similarity=0.365 Sum_probs=96.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE----EEECCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 89862368504467778864222100123100012149----995178--438888516615789998666420680599
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY----QVAYQG--KNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~----~~~~~~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
|+++|.-..|||+|+-.+-....... ....||.- .+..++ ..+.+.||+|++.|..|+..-..-+|++||
T Consensus 3 ivlvGd~~VGKTsli~r~~~~~f~~~----y~~Tig~d~~~k~i~~~~~~~~l~iwDtaG~e~~~~l~~~~~~~a~~~il 78 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVNKKFSNQ----YKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVL 78 (172)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHCCEEEE
T ss_conf 99999899789999999952988987----57755516999999999999999999699983110688998652757999
Q ss_pred EEECCCCCCHHHHHHHHH-----HHH------CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 998366740235777898-----997------099415612331244332000221000013200012347403631100
Q gi|254780787|r 460 VLAADEEIMPQAIESINH-----AKA------ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAK 528 (884)
Q Consensus 460 vv~~~~g~~~qt~e~~~~-----~~~------~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (884)
|.|..+ +++.+.+.. ... ..+|+|++-||+|+..... +..+... .+. ...+...++.+||+
T Consensus 79 vydvt~---~~Sf~~l~~w~~~~~~~~~~~~~~~~piilvgNK~Dl~~~r~--V~~~e~~--~~a-~~~~~~~~~E~SAk 150 (172)
T cd01862 79 VYDVTN---PKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ--VSTKKAQ--QWC-QSNGNIPYFETSAK 150 (172)
T ss_pred EECCCC---HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHCCC--CCHHHHH--HHH-HHCCCCEEEEECCC
T ss_conf 933899---899999999999999972767765763899963368364189--9999999--999-97699789997526
Q ss_pred CCCCCCCCCCCHH
Q ss_conf 2477411221000
Q gi|254780787|r 529 NNLNLDKLLDAIL 541 (884)
Q Consensus 529 ~~~~~~~~~~~~~ 541 (884)
++.|+++++..+.
T Consensus 151 ~~~nV~e~F~~l~ 163 (172)
T cd01862 151 EAINVEQAFETIA 163 (172)
T ss_pred CCCCHHHHHHHHH
T ss_conf 7919899999999
No 140
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.29 E-value=1.3e-11 Score=97.33 Aligned_cols=147 Identities=20% Similarity=0.336 Sum_probs=94.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE---EEECCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89862368504467778864222100123100012149---995178--4388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY---QVAYQG--KNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~---~~~~~~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
|+++|.-..|||+|+-.+.+..-..... ..|+.+ .+..++ ..+.|.||+|++.|..||..-..-+|++|||
T Consensus 3 i~llGd~~VGKTsli~r~~~~~f~~~y~----~Ti~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~~~~~~~~~a~~~ilv 78 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTGKFPTEYV----PTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLIC 78 (171)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCC----CEEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHHHHHHCCEEEEE
T ss_conf 9999999966999999996299998758----803466689999999999999998998710241322344426589999
Q ss_pred EECCCCCCHHHHHHHH-----HHH--HCCCCEEEECCCCCCCCCCCCHHHH-----HH-H-CCCCCCCCCCCCCEEEEEE
Q ss_conf 9836674023577789-----899--7099415612331244332000221-----00-0-0132000123474036311
Q gi|254780787|r 461 LAADEEIMPQAIESIN-----HAK--AADVSIIVAINKIDKLGADPQKVRM-----SL-L-KHDVFVESMGGDILDVEIS 526 (884)
Q Consensus 461 v~~~~g~~~qt~e~~~-----~~~--~~~~p~iva~nk~d~~~~~~~~~~~-----~~-~-~~~~~~~~~~~~~~~~~~~ 526 (884)
.|+.+ +++.+.+. .++ ..++|+|++.||+|+.......... .. . +...+...+ +...++.+|
T Consensus 79 ydit~---~~Sf~~i~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~r~V~~~e~~~~a~~~-~~~~f~E~S 154 (171)
T cd00157 79 FSVDS---PSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEI-GAIGYMECS 154 (171)
T ss_pred EECCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHC-CCCEEEEEC
T ss_conf 96897---78899999999999998599986899998710012300022331147515899999999984-998899978
Q ss_pred ECCCCCCCCCCCCH
Q ss_conf 00247741122100
Q gi|254780787|r 527 AKNNLNLDKLLDAI 540 (884)
Q Consensus 527 ~~~~~~~~~~~~~~ 540 (884)
|++|.|++++++.+
T Consensus 155 Ak~g~nV~e~F~~l 168 (171)
T cd00157 155 ALTQEGVKEVFEEA 168 (171)
T ss_pred CCCCCCHHHHHHHH
T ss_conf 78995989999999
No 141
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.25 E-value=3e-11 Score=94.89 Aligned_cols=150 Identities=27% Similarity=0.275 Sum_probs=98.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHH-HHCCCCCCEECCCEE-----EEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 89862368504467778864222-100123100012149-----995178438888516615789998666420680599
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADV-AKGEIGGITQHIGAY-----QVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~-~~~e~ggitq~iga~-----~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
|++||.-..|||+|+-..-+... -.... | ||.+ .+......+.|.||+|.+.|..|+..-..-+|.+||
T Consensus 2 IvvlGd~~VGKTSLi~rf~~~~F~~~y~~---T--i~~~~~k~~~v~~~~v~l~i~DtaG~e~~~~l~~~~~r~a~~~il 76 (198)
T cd04147 2 LVFMGAAGVGKTALIQRFLYDTFEPKYRR---T--VEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFAL 76 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCC---C--HHHEEEEEEEECCEEEEEEEEECCCCCCCHHHHHHHCCCCCEEEE
T ss_conf 89999899779999999985989988888---7--254188999989979999999787751301455554158866899
Q ss_pred EEECCCCCCHHHHHHHHH-HHH----CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 998366740235777898-997----099415612331244332000221000013200012347403631100247741
Q gi|254780787|r 460 VLAADEEIMPQAIESINH-AKA----ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLD 534 (884)
Q Consensus 460 vv~~~~g~~~qt~e~~~~-~~~----~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (884)
|.|+.+=---+.++.|.. +.. ..+|+|++-||+|++.........+... . .....+..++.+||++|.|++
T Consensus 77 VyDit~~~Sf~~l~~w~~~i~~~~~~~~ipiilVGNK~Dll~~~R~V~~~e~~~---~-a~~~~~~~f~EtSAktg~nV~ 152 (198)
T cd04147 77 VYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALS---T-VELDWNCGFVETSAKDNENVL 152 (198)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHH---H-HHHCCCCEEEECCCCCCCCHH
T ss_conf 961697799999999999999962888982899987876501047848999999---9-985599789987799994989
Q ss_pred CCCCCHHCCC
Q ss_conf 1221000023
Q gi|254780787|r 535 KLLDAILLQA 544 (884)
Q Consensus 535 ~~~~~~~~~~ 544 (884)
++++.+.-..
T Consensus 153 e~F~~l~r~i 162 (198)
T cd04147 153 EVFKELLRQA 162 (198)
T ss_pred HHHHHHHHHH
T ss_conf 9999999997
No 142
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.25 E-value=4.3e-11 Score=93.84 Aligned_cols=148 Identities=20% Similarity=0.292 Sum_probs=96.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEE---EECC--CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 898623685044677788642221001231000121499---9517--84388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQ---VAYQ--GKNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~---~~~~--~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
|+++|.-..|||+|+-.+-...-... ....|+..+ +..+ ...+.+.||+|++.|..|+..-..-+|++|||
T Consensus 4 i~liGd~~VGKTsli~r~~~~~F~~~----y~pTi~~~~~~~i~~~~~~v~l~iwDtaG~e~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01870 4 LVIVGDGACGKTCLLIVFSKDQFPEV----YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 79 (175)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC----CCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHHHHCCCCEEEEE
T ss_conf 99999899669999999970989998----47843689999999999999999997776613232404431488789999
Q ss_pred EECCCCCCHHHHHHH-----HHHHH--CCCCEEEECCCCCCCCCCCCHHHHHH-H-------CCCCCCCCCCCCCEEEEE
Q ss_conf 983667402357778-----98997--09941561233124433200022100-0-------013200012347403631
Q gi|254780787|r 461 LAADEEIMPQAIESI-----NHAKA--ADVSIIVAINKIDKLGADPQKVRMSL-L-------KHDVFVESMGGDILDVEI 525 (884)
Q Consensus 461 v~~~~g~~~qt~e~~-----~~~~~--~~~p~iva~nk~d~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~ 525 (884)
.|+++ +++.+++ ..++. .++|+|++-||+|+...+........ . +...+...+ +...++.+
T Consensus 80 ydi~~---~~Sf~~~~~~w~~~i~~~~~~~piilVgnK~DL~~~~~~~~~~~~~~~~~V~~~eg~~~a~~~-~~~~f~Et 155 (175)
T cd01870 80 FSIDS---PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKI-GAFGYMEC 155 (175)
T ss_pred EECCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHC-CCCEEEEE
T ss_conf 86598---799999999999999972989989999872433433234566654025566899999999974-99789997
Q ss_pred EECCCCCCCCCCCCHH
Q ss_conf 1002477411221000
Q gi|254780787|r 526 SAKNNLNLDKLLDAIL 541 (884)
Q Consensus 526 ~~~~~~~~~~~~~~~~ 541 (884)
||+++.|++++++.+.
T Consensus 156 SAk~~~nV~e~Fe~~~ 171 (175)
T cd01870 156 SAKTKEGVREVFEMAT 171 (175)
T ss_pred CCCCCCCHHHHHHHHH
T ss_conf 6899979899999999
No 143
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.24 E-value=1.4e-10 Score=90.35 Aligned_cols=155 Identities=15% Similarity=0.100 Sum_probs=112.3
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCE--EEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 553038986236850446777886422210012310001214--999517843888851661578999866642068059
Q gi|254780787|r 381 IRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGA--YQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAV 458 (884)
Q Consensus 381 ~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga--~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~i 458 (884)
.+..=|-|+|==+.||||||-+|.... ...++-.+|. -.+...+..+++.|.-|+..|-.+-.+=..-||.+|
T Consensus 15 ~ke~~ililGLd~aGKTTil~~lk~~~-----~~~~~PT~g~~~e~~~~~~~~~~~wDlgG~~~~R~lW~~Yy~~~~~iI 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDR-----LAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC-----CCCCCCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHHHHHCCCCEEE
T ss_conf 661479999658898899999980699-----753057878864899999999999988987778899998821675899
Q ss_pred EEEECCCC-CCHHHHHHHHHH----HHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCC----CCCCCEEEEEEECC
Q ss_conf 99983667-402357778989----9709941561233124433200022100001320001----23474036311002
Q gi|254780787|r 459 LVLAADEE-IMPQAIESINHA----KAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVES----MGGDILDVEISAKN 529 (884)
Q Consensus 459 lvv~~~~g-~~~qt~e~~~~~----~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 529 (884)
+|||+.|- -+.+..+.+..+ .-.++|+.|..||.|.+++-......+.+........ ........++||++
T Consensus 90 fVVDssD~~r~~eak~~L~~ll~~~~l~~~PlLilaNKqDl~~a~~~~ei~~~L~L~~~~~~~~~~~~r~~~i~~~SA~t 169 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVR 169 (184)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHCCHHHHCCCCCCCCCCEEEEEEECCC
T ss_conf 99726868899999999999864676559709999975677789999999988195123265576677631999735607
Q ss_pred CCCCCCCCCCH
Q ss_conf 47741122100
Q gi|254780787|r 530 NLNLDKLLDAI 540 (884)
Q Consensus 530 ~~~~~~~~~~~ 540 (884)
|+|+.++++-+
T Consensus 170 G~Gl~egl~WL 180 (184)
T smart00178 170 RMGYGEGFKWL 180 (184)
T ss_pred CCCHHHHHHHH
T ss_conf 97869999999
No 144
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.24 E-value=4.9e-11 Score=93.44 Aligned_cols=154 Identities=16% Similarity=0.223 Sum_probs=98.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEEC--CCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 898623685044677788642221001231000121499951--784388885166157899986664206805999983
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAY--QGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~--~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
|.++|.-..|||+|+-..-+........-.|-.... ..+.. ....+.+.||.|++.|..||.---.-+|.+|||.|+
T Consensus 4 vv~lGd~~VGKTsli~r~~~~~f~~~y~pti~~~~~-~~~~~~~~~v~l~iwDTaG~e~~~~l~~~~~~~~~~~ilvydv 82 (175)
T cd01874 4 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 82 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEE-EEEEECCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEEEC
T ss_conf 999899995889999999649899986786347899-9999999999999998999745124658877138888999637
Q ss_pred CCCCCHHHHHHHHH-----H--HHCCCCEEEECCCCCCCCCCCCH--H----HHHH-HCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 66740235777898-----9--97099415612331244332000--2----2100-00132000123474036311002
Q gi|254780787|r 464 DEEIMPQAIESINH-----A--KAADVSIIVAINKIDKLGADPQK--V----RMSL-LKHDVFVESMGGDILDVEISAKN 529 (884)
Q Consensus 464 ~~g~~~qt~e~~~~-----~--~~~~~p~iva~nk~d~~~~~~~~--~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 529 (884)
.+ +++.+++.. + ...++|+|++-||+|+....... . .... .+.+.......+...++.+||++
T Consensus 83 ~d---~~Sf~~i~~~w~~~i~~~~~~~p~iLVGnK~DL~~~~~~~~~~~~~~~r~V~~~eg~~lA~~~~~~~y~EtSAk~ 159 (175)
T cd01874 83 VS---PSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred CC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 98---788999999999999982989988999987203356666777644026566899999999975995999913378
Q ss_pred CCCCCCCCCCHHCC
Q ss_conf 47741122100002
Q gi|254780787|r 530 NLNLDKLLDAILLQ 543 (884)
Q Consensus 530 ~~~~~~~~~~~~~~ 543 (884)
|+|++++++.+...
T Consensus 160 g~nV~e~F~~~i~~ 173 (175)
T cd01874 160 QKGLKNVFDEAILA 173 (175)
T ss_pred CCCHHHHHHHHHHH
T ss_conf 95979999999998
No 145
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.24 E-value=3.4e-11 Score=94.50 Aligned_cols=143 Identities=22% Similarity=0.298 Sum_probs=96.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE------EEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 89862368504467778864222100123100012149------995178438888516615789998666420680599
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY------QVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~------~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
|++||.-..|||+|+.++.+..-... ....||+- .+......+.+.||+|++.|..|+..-..-+|++||
T Consensus 8 ivvlGd~~VGKTsli~r~~~~~f~~~----~~~Tig~~~~~k~i~~~~~~v~l~iwDtaG~e~~~~l~~~~~~~a~~~il 83 (170)
T cd04116 8 VILLGDGGVGKSSLMNRYVTNKFDTQ----LFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHHHEECCCEEEE
T ss_conf 99999999789999999973989998----88876079899999999999999999899972435241766004773399
Q ss_pred EEECCCCCCHHHHHHHHHH--------H---HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 9983667402357778989--------9---7099415612331244332000221000013200012347403631100
Q gi|254780787|r 460 VLAADEEIMPQAIESINHA--------K---AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAK 528 (884)
Q Consensus 460 vv~~~~g~~~qt~e~~~~~--------~---~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (884)
|.|+.+ +++.+.+... . ..++|+|++-||+|+..- .+..+... .+. ...+...++.+||+
T Consensus 84 vydit~---~~Sf~~~~~w~~~~~~~~~~~~~~~~piilvgnK~Dl~~r---~v~~~e~~--~~a-~~~~~~~~~E~SAk 154 (170)
T cd04116 84 TFAVDD---SQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPER---QVSTEEAQ--AWC-RENGDYPYFETSAK 154 (170)
T ss_pred EEECCC---HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHC---CCCHHHHH--HHH-HHCCCCEEEEECCC
T ss_conf 997888---7999999999999999714457888409999611113037---88999999--999-98599789998888
Q ss_pred CCCCCCCCCCCHH
Q ss_conf 2477411221000
Q gi|254780787|r 529 NNLNLDKLLDAIL 541 (884)
Q Consensus 529 ~~~~~~~~~~~~~ 541 (884)
+|.|++++++.+.
T Consensus 155 ~g~nV~~~F~~l~ 167 (170)
T cd04116 155 DATNVAAAFEEAV 167 (170)
T ss_pred CCCCHHHHHHHHH
T ss_conf 8818899999999
No 146
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.23 E-value=7e-11 Score=92.40 Aligned_cols=143 Identities=22% Similarity=0.264 Sum_probs=96.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEE---EECCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 898623685044677788642221001231000121499---95178--4388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQ---VAYQG--KNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~---~~~~~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
|+++|.-..|||+|+-.+-+......-. ..|+.++ +..++ ..+.+.||+|++.|..||..-..-+|++|||
T Consensus 3 iv~vGd~~vGKTsli~r~~~~~f~~~y~----~Ti~~~~~k~i~~~~~~~~l~iwDt~G~e~~~~~~~~~~~~a~~~ilv 78 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQGHFVDDYD----PTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLV 78 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCC----CCEEEEEEEEEEECCEEEEEEEEECCCCCCHHHHHHHHCCCCCEEEEE
T ss_conf 9999999978999999997297998778----813678999999999999999998999710356777753798779998
Q ss_pred EECCCCCCHHHHHHHHH----H-H---HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 98366740235777898----9-9---70994156123312443320002210000132000123474036311002477
Q gi|254780787|r 461 LAADEEIMPQAIESINH----A-K---AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLN 532 (884)
Q Consensus 461 v~~~~g~~~qt~e~~~~----~-~---~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (884)
.|+.+ +++.+.+.. + + ..++|+|++-||+|+.... .+..+.. ..+...+ +..++.+||++|.|
T Consensus 79 ydi~~---~~Sf~~~~~~~~~i~~~~~~~~~piilvgnK~DL~~~r--~V~~~e~--~~~a~~~--~~~~~E~SAk~g~n 149 (164)
T smart00173 79 YSITD---RQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESER--VVSTEEG--KELARQW--GCPFLETSAKERVN 149 (164)
T ss_pred EECCC---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHCC--CCCHHHH--HHHHHHC--CCEEEEECCCCCCC
T ss_conf 30798---89999999999999986188888668777534630117--8999999--9999983--99899985898817
Q ss_pred CCCCCCCHH
Q ss_conf 411221000
Q gi|254780787|r 533 LDKLLDAIL 541 (884)
Q Consensus 533 ~~~~~~~~~ 541 (884)
++++++.+.
T Consensus 150 V~~~F~~l~ 158 (164)
T smart00173 150 VDEAFYDLV 158 (164)
T ss_pred HHHHHHHHH
T ss_conf 899999999
No 147
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.23 E-value=4.8e-11 Score=93.54 Aligned_cols=149 Identities=19% Similarity=0.228 Sum_probs=98.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCE--ECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 89862368504467778864222100123100--0121499951784388885166157899986664206805999983
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGIT--QHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggit--q~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
|+|+|.-..|||+|+.++.+......-...|. .++....+......+.|.||||++.|..|+..-..-+|++|||.|+
T Consensus 3 ivvvG~~~vGKTsli~r~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~l~iwDt~g~~~~~~~~~~~~~~a~~~ilvfd~ 82 (161)
T cd01863 3 ILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDV 82 (161)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCCCCHHHHHHHCCEEEEEEEC
T ss_conf 99999799579999999963999998487313342389999999999999999999842353422441321534899767
Q ss_pred CCCCCHHHHHHHH-HHH----HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 6674023577789-899----70994156123312443320002210000132000123474036311002477411221
Q gi|254780787|r 464 DEEIMPQAIESIN-HAK----AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLD 538 (884)
Q Consensus 464 ~~g~~~qt~e~~~-~~~----~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (884)
.+--.-+.+..+. .++ ..++|+|++-||+|+.... +..+.... ....+ +...+.+||++|.|++++++
T Consensus 83 ~~~~Sf~~i~~~~~~i~~~~~~~~~~~ilVgnK~D~~~~~---v~~~~~~~--~a~~~--~~~y~e~Sak~g~nV~~~F~ 155 (161)
T cd01863 83 TRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENRE---VTREEGLK--FARKH--NMLFIETSAKTRDGVQQAFE 155 (161)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC---CCHHHHHH--HHHHC--CCEEEEECCCCCCCHHHHHH
T ss_conf 8265699999999999985688887378873104400068---99999999--99986--99999971586815999999
Q ss_pred CHH
Q ss_conf 000
Q gi|254780787|r 539 AIL 541 (884)
Q Consensus 539 ~~~ 541 (884)
.+.
T Consensus 156 ~l~ 158 (161)
T cd01863 156 ELV 158 (161)
T ss_pred HHH
T ss_conf 999
No 148
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.23 E-value=2e-10 Score=89.34 Aligned_cols=151 Identities=17% Similarity=0.194 Sum_probs=109.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 89862368504467778864222100123100012149995178438888516615789998666420680599998366
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADE 465 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~ 465 (884)
|-|+|==+.||||||-.|........- .-|+..-...++..+..++|.|++||+.|-.+-.+=..-||.+|+|||+.|
T Consensus 2 IlilGLd~aGKTTil~~l~~~~~~~~~--~PT~Gf~~~~i~~~~~~l~~wDlgGq~~~R~~W~~Y~~~~~gIIfVVDssD 79 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESV--VPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSAD 79 (164)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCC--CCCCCCCEEEEEECCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 999967999899999998169987653--563277469999899999998537528886569987117758999995688
Q ss_pred -CCCHHHHHHHHHHH--HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHH
Q ss_conf -74023577789899--70994156123312443320002210000132000123474036311002477411221000
Q gi|254780787|r 466 -EIMPQAIESINHAK--AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAIL 541 (884)
Q Consensus 466 -g~~~qt~e~~~~~~--~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (884)
.-+....+.+.-+- ..++|++|..||.|++.+.......+.+...... .+..-.+..++++|+|++++++.+.
T Consensus 80 ~~rl~eak~~L~~ll~~~~~~PlLIlaNKqDl~~a~s~~ei~~~L~L~~i~---~~r~w~iq~~s~~g~gl~~~~~~l~ 155 (164)
T cd04162 80 SERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIA---RGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCCC---CCCCEEEEEECCCCCCCHHHHHHHH
T ss_conf 889999999999997087998699998632433699999999866994637---9998899711047998589999999
No 149
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.23 E-value=4.2e-11 Score=93.92 Aligned_cols=152 Identities=18% Similarity=0.224 Sum_probs=97.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEE---EC-CC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 8986236850446777886422210012310001214999---51-78--438888516615789998666420680599
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQV---AY-QG--KNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~---~~-~~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
|+++|.-..|||+|+-.+-..... |.-.-| ||..+. .. ++ ..+.|.||+|++.|..||..--.-+|++||
T Consensus 3 ivlvGd~~VGKTsli~r~~~~~F~--~~~~pT--i~~~~~~~~~~~~~~~v~l~iwDtaG~e~~~~l~~~~~~~a~~~il 78 (187)
T cd04132 3 IVVVGDGGCGKTCLLIVYSQGKFP--EEYVPT--VFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLI 78 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC--CCCCCC--EEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHHHHHHCCEEEE
T ss_conf 999994997699999999639899--975896--6479999999549989999999699971105343445300348889
Q ss_pred EEECCCCCCHHHHH-H-HHHHHH--CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 99836674023577-7-898997--0994156123312443320002210000132000123474036311002477411
Q gi|254780787|r 460 VLAADEEIMPQAIE-S-INHAKA--ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDK 535 (884)
Q Consensus 460 vv~~~~g~~~qt~e-~-~~~~~~--~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (884)
|.|+.+=---+-+. . +..++. .++|+|++.||+|+...+.....-...+...+... .+...++.+||++|.|+++
T Consensus 79 vydit~~~Sf~~i~~~W~~~i~~~~~~~piilVgnK~DL~~~~~~~~~v~~e~~~~~a~~-~~~~~y~EtSAk~g~nV~e 157 (187)
T cd04132 79 CYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKK-QGAFAYLECSAKTMENVEE 157 (187)
T ss_pred EECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHCCCCCCCHHHHHHHHHH-CCCCEEEEECCCCCCCHHH
T ss_conf 503687677999999999999986899997999987221221223765789999999998-5997899957688929899
Q ss_pred CCCCHHC
Q ss_conf 2210000
Q gi|254780787|r 536 LLDAILL 542 (884)
Q Consensus 536 ~~~~~~~ 542 (884)
+++.+.-
T Consensus 158 ~F~~l~~ 164 (187)
T cd04132 158 VFDTAIE 164 (187)
T ss_pred HHHHHHH
T ss_conf 9999999
No 150
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.22 E-value=6.6e-11 Score=92.57 Aligned_cols=154 Identities=18% Similarity=0.197 Sum_probs=96.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHH-HCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 898623685044677788642221-0012310001214999517843888851661578999866642068059999836
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVA-KGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAAD 464 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~-~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~ 464 (884)
|.++|....|||+|+-.+.+..-. .....+....--.+.+......+.|.||+|++.|..||..-..-+|++|||.|+.
T Consensus 3 vvlvGd~~VGKTsli~r~~~~~F~~~y~pT~~~~~~~~i~~~~~~v~l~iwDtaG~e~~~~l~~~~~~~a~~~ilvydv~ 82 (173)
T cd04130 3 CVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVV 82 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCHHHHHHHCCCCEEEEEEECC
T ss_conf 99999899788999999961999998578358999999999999999999989987344345676613787899999659
Q ss_pred CCCCHHHHHHHH-----HHH--HCCCCEEEECCCCCCCCCCCCHHH------HHH-HCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 674023577789-----899--709941561233124433200022------100-001320001234740363110024
Q gi|254780787|r 465 EEIMPQAIESIN-----HAK--AADVSIIVAINKIDKLGADPQKVR------MSL-LKHDVFVESMGGDILDVEISAKNN 530 (884)
Q Consensus 465 ~g~~~qt~e~~~-----~~~--~~~~p~iva~nk~d~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 530 (884)
+ ++|.+.+. .++ ..++|+|++-||+|+......... ... .+.+.......+...++.+||+++
T Consensus 83 ~---~~Sf~~l~~~w~~~i~~~~~~~piilvGnK~DL~~~~~~~~~~~~~~~r~Vs~~e~~~~a~~~~~~~y~EtSAkt~ 159 (173)
T cd04130 83 N---PSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQ 159 (173)
T ss_pred C---HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 8---7889999999999999609899889998870110013355444332575578999999999849968999686889
Q ss_pred CCCCCCCCCHHC
Q ss_conf 774112210000
Q gi|254780787|r 531 LNLDKLLDAILL 542 (884)
Q Consensus 531 ~~~~~~~~~~~~ 542 (884)
.|++++++.+.+
T Consensus 160 ~nV~e~Fe~~i~ 171 (173)
T cd04130 160 KNLKEVFDTAIL 171 (173)
T ss_pred CCHHHHHHHHHH
T ss_conf 697999999985
No 151
>PRK11058 putative GTPase HflX; Provisional
Probab=99.21 E-value=2.8e-10 Score=88.24 Aligned_cols=151 Identities=19% Similarity=0.221 Sum_probs=100.6
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEEC-CCCEEEEEECCCH---------HHHHHHHHHH
Q ss_conf 55303898623685044677788642221001231000121499951-7843888851661---------5789998666
Q gi|254780787|r 381 IRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAY-QGKNITFLDTPGH---------AAFYEMRARG 450 (884)
Q Consensus 381 ~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~-~~~~~~~iDtPGh---------~~f~~~r~rg 450 (884)
.--|.|++.|--+.||||||-+|.+.+|...-.==-|-.--.-.+.. ++..+.|.||.|+ +||.+.-.-
T Consensus 195 ~~~~~ValVGYTNAGKSTL~n~Lt~~~v~~~d~LFATLD~t~R~~~l~~~~~~lltDTVGFI~~LP~~LveAF~sTLeE- 273 (426)
T PRK11058 195 ADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQE- 273 (426)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCHHHHHCCHHHHHHHHHHHHH-
T ss_conf 6997699973577778999877752887632545014786202678699986999715066651989999999999999-
Q ss_pred HHCCCCEEEEEECCCCC-CHHHHHHHHHHHHC---CCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEE
Q ss_conf 42068059999836674-02357778989970---994156123312443320002210000132000123474036311
Q gi|254780787|r 451 ARVTDIAVLVLAADEEI-MPQAIESINHAKAA---DVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEIS 526 (884)
Q Consensus 451 ~~~~d~~ilvv~~~~g~-~~qt~e~~~~~~~~---~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (884)
+.-+|+.+.|||+-+-- ..|-.-....++.. ..|.|+++||||+.......... ...+....+.+|
T Consensus 274 v~~ADlLLhVvD~S~p~~~~q~~~v~~vL~elg~~~~p~i~V~NKiD~~~~~~~~~~~----------~~~~~p~~V~iS 343 (426)
T PRK11058 274 TRQATLLLHVIDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRIDR----------DEENKPIRVWLS 343 (426)
T ss_pred HHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHH----------HHCCCCCEEEEE
T ss_conf 9639889999849993799999999999997599999779999770238964455666----------533998779997
Q ss_pred ECCCCCCCCCCCCHHC
Q ss_conf 0024774112210000
Q gi|254780787|r 527 AKNNLNLDKLLDAILL 542 (884)
Q Consensus 527 ~~~~~~~~~~~~~~~~ 542 (884)
|++|+|++.|++.|.-
T Consensus 344 A~tg~Gi~~L~~~I~~ 359 (426)
T PRK11058 344 AQTGAGIPLLFQALTE 359 (426)
T ss_pred CCCCCCHHHHHHHHHH
T ss_conf 8999899999999998
No 152
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.21 E-value=9.8e-11 Score=91.38 Aligned_cols=143 Identities=23% Similarity=0.284 Sum_probs=97.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE---EEECC--CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89862368504467778864222100123100012149---99517--84388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY---QVAYQ--GKNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~---~~~~~--~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
|+|+|.-..|||+|+.++.+..-.....-. ||.+ .+..+ ...+.|.||+|++.|..++..-..-+|.+|||
T Consensus 2 i~ivG~~~vGKTsli~r~~~~~f~~~~~pT----i~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~ilv 77 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKGTFVEEYDPT----IEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILV 77 (160)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCC----EEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHCCEEEEE
T ss_conf 999996996799999999619599877883----0048999999766999999997999623557889997643689997
Q ss_pred EECCCCCCHHHHHHHHH----HH----HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 98366740235777898----99----70994156123312443320002210000132000123474036311002477
Q gi|254780787|r 461 LAADEEIMPQAIESINH----AK----AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLN 532 (884)
Q Consensus 461 v~~~~g~~~qt~e~~~~----~~----~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (884)
.|+.+ +++.+.+.. +. ...+|+|++.||+|+.... .+..+..+ .+.... +.....+||++|.|
T Consensus 78 fd~~~---~~Sf~~i~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~--~V~~~e~~--~~a~~~--~~~y~e~Sak~g~n 148 (160)
T cd00876 78 YSITD---RESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENER--QVSKEEGK--ALAKEW--GCPFIETSAKDNIN 148 (160)
T ss_pred ECCCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHCC--CCCHHHHH--HHHHHC--CCEEEEECCCCCCC
T ss_conf 32898---78999999999999997287886299999745622307--89999999--999984--99799984798949
Q ss_pred CCCCCCCHH
Q ss_conf 411221000
Q gi|254780787|r 533 LDKLLDAIL 541 (884)
Q Consensus 533 ~~~~~~~~~ 541 (884)
++++++.+.
T Consensus 149 V~e~F~~i~ 157 (160)
T cd00876 149 IDEVFKLLV 157 (160)
T ss_pred HHHHHHHHH
T ss_conf 899999999
No 153
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.21 E-value=5.9e-11 Score=92.88 Aligned_cols=147 Identities=21% Similarity=0.288 Sum_probs=96.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCC--CCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 89862368504467778864222100123--1000121499951784388885166157899986664206805999983
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIG--GITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~g--gitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
|+|+|.-..|||+|+.++-+........- |+.-..-...+......+.|.||+|++.|..|+..-..-+|++|||.|+
T Consensus 3 i~vvG~~~vGKTsli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~~~~~ilvfdi 82 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDI 82 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99999899779999999941999998688456666779999999999999996799446647799883366536884368
Q ss_pred CCCCCHHHHHHHH----HHHH---CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 6674023577789----8997---09941561233124433200022100001320001234740363110024774112
Q gi|254780787|r 464 DEEIMPQAIESIN----HAKA---ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKL 536 (884)
Q Consensus 464 ~~g~~~qt~e~~~----~~~~---~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (884)
.+ +++.+.+. .++. .++|+|++.||+|+.... .+..+... .+...+ +...+.+||++|+|++++
T Consensus 83 ~~---~~Sf~~i~~w~~~i~~~~~~~~piilvgnK~Dl~~~r--~V~~~e~~--~~a~~~--~~~~~e~SAk~~~~v~e~ 153 (164)
T smart00175 83 TN---RESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQR--QVSREEAE--AFAEEH--GLPFFETSAKTNTNVEEA 153 (164)
T ss_pred CC---HHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHC--CCCHHHHH--HHHHHC--CCEEEEECCCCCCCHHHH
T ss_conf 99---8999999999999998679998255116456856518--79999999--999984--997999831669088999
Q ss_pred CCCHH
Q ss_conf 21000
Q gi|254780787|r 537 LDAIL 541 (884)
Q Consensus 537 ~~~~~ 541 (884)
++.+.
T Consensus 154 F~~l~ 158 (164)
T smart00175 154 FEELA 158 (164)
T ss_pred HHHHH
T ss_conf 99999
No 154
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.20 E-value=1.4e-10 Score=90.29 Aligned_cols=147 Identities=19% Similarity=0.205 Sum_probs=96.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHC-C-CCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 89862368504467778864222100-1-231000121499951784388885166157899986664206805999983
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKG-E-IGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~-e-~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
|+++|.-..|||+|+-.+.+..-... . .-|++...--..+......+.|.||+|++.|..|+..-..-+|++|||.|+
T Consensus 3 ivllGd~~VGKTsli~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDtaG~e~f~~~~~~y~~~a~~~ilvfDi 82 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDV 82 (161)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCHHHHHHHCCCCEEEEEEEC
T ss_conf 99999899678999999980977997266541579999999999999999997999843432469973568767999968
Q ss_pred CCCCCHHHHHHHH-HHH--HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCH
Q ss_conf 6674023577789-899--7099415612331244332000221000013200012347403631100247741122100
Q gi|254780787|r 464 DEEIMPQAIESIN-HAK--AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAI 540 (884)
Q Consensus 464 ~~g~~~qt~e~~~-~~~--~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (884)
.+----+.+..|. .++ .-.+|+|++.||+|+.... ..+- ..+...+ +..+..+||++|.|++++++.+
T Consensus 83 t~~~Sf~~~~~w~~~i~~~~~~~p~ilVgNK~DL~~~~----~~~~---~~~a~~~--~~~f~etSAk~g~nV~e~F~~l 153 (161)
T cd04124 83 TRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV----TQKK---FNFAEKH--NLPLYYVSAADGTNVVKLFQDA 153 (161)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH----HHHH---HHHHHHC--CCEEEEEECCCCCCHHHHHHHH
T ss_conf 97788999999999999868699899999971177425----8999---9999986--9919999078380979999999
Q ss_pred H
Q ss_conf 0
Q gi|254780787|r 541 L 541 (884)
Q Consensus 541 ~ 541 (884)
.
T Consensus 154 ~ 154 (161)
T cd04124 154 I 154 (161)
T ss_pred H
T ss_conf 9
No 155
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.20 E-value=3.6e-10 Score=87.56 Aligned_cols=125 Identities=21% Similarity=0.354 Sum_probs=85.4
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEEC--CCCEEEEEECCCHHHHHH-HHHHHHHCCCCEEEE
Q ss_conf 03898623685044677788642221001231000121499951--784388885166157899-986664206805999
Q gi|254780787|r 384 PVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAY--QGKNITFLDTPGHAAFYE-MRARGARVTDIAVLV 460 (884)
Q Consensus 384 pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~--~~~~~~~iDtPGh~~f~~-~r~rg~~~~d~~ilv 460 (884)
|.|-++|--+.|||+||-.|........ .--|+-++|.+..+. .+..++++|+|||..+-. +-..-...++.+|+|
T Consensus 1 ptvLl~Gl~~aGKT~Lf~~L~~~~~~~T-~tS~~~n~~~~~~~~~~~~~~~~lvD~PGH~klR~~~~~~~~~~~~gIVfv 79 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRST-VTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFV 79 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCC-CCCCCCCCEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9599990799989999999974998887-788878620664024668727999987996889999999987549899999
Q ss_pred EECCCC--CCHHHHHHHH-HH-----HHCCCCEEEECCCCCCCCCCCCHHHHHHHCC
Q ss_conf 983667--4023577789-89-----9709941561233124433200022100001
Q gi|254780787|r 461 LAADEE--IMPQAIESIN-HA-----KAADVSIIVAINKIDKLGADPQKVRMSLLKH 509 (884)
Q Consensus 461 v~~~~g--~~~qt~e~~~-~~-----~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~ 509 (884)
||+.+= -...+-|-+. ++ ...++|++||+||.|...+-+.......++.
T Consensus 80 VDs~~~~~~l~~~Ae~Ly~iL~~~~~~~~~iPvLIacNKqDl~tA~~~~~Ik~~LE~ 136 (203)
T cd04105 80 VDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEK 136 (203)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 968875111999999999998626643689988999866143457899999999999
No 156
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.20 E-value=1e-10 Score=91.22 Aligned_cols=142 Identities=20% Similarity=0.253 Sum_probs=96.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEE-----EECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 898623685044677788642221001231000121499-----951784388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQ-----VAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~-----~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
|+++|.-..|||+|+-.+-...-...- ...||..+ +......+.+.||+|++.|..|+..-..-+|.+|||
T Consensus 4 vvlvGd~~VGKTsli~r~~~~~F~~~y----~~Ti~~~~~k~~~i~~~~~~l~iwDtaG~e~~~~l~~~~~~~a~~~ilv 79 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQNHFVDEY----DPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCC----CCCCCCEEEEEEEECCEEEEEEEEECCCCCCCCHHHHHHHCCCCEEEEE
T ss_conf 999899998899999999839288756----8855527999999999999999997998601114789871578779999
Q ss_pred EECCCCCCHHHHHHHHH----HH----HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 98366740235777898----99----70994156123312443320002210000132000123474036311002477
Q gi|254780787|r 461 LAADEEIMPQAIESINH----AK----AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLN 532 (884)
Q Consensus 461 v~~~~g~~~qt~e~~~~----~~----~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (884)
.|+.+ +++.+.+.. ++ ...+|+|++-||+|+.. ..+..+.. ..+...+ +..++.+||++|.|
T Consensus 80 ydvt~---~~Sf~~v~~w~~~i~~~~~~~~~piilVgNK~Dl~~---r~V~~~e~--~~~a~~~--~~~f~E~SAk~~~n 149 (162)
T cd04138 80 FAINS---RKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA---RTVSSRQG--QDLAKSY--GIPYIETSAKTRQG 149 (162)
T ss_pred EECCC---HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCHHH---CCCCHHHH--HHHHHHC--CCEEEEECCCCCCC
T ss_conf 61798---899998999999999854888854999976535645---55889999--9999980--99899973899859
Q ss_pred CCCCCCCHH
Q ss_conf 411221000
Q gi|254780787|r 533 LDKLLDAIL 541 (884)
Q Consensus 533 ~~~~~~~~~ 541 (884)
+++++..+.
T Consensus 150 V~e~F~~l~ 158 (162)
T cd04138 150 VEEAFYTLV 158 (162)
T ss_pred HHHHHHHHH
T ss_conf 899999999
No 157
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.19 E-value=2.6e-10 Score=88.49 Aligned_cols=151 Identities=16% Similarity=0.209 Sum_probs=96.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHH-HHCCC-CCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 89862368504467778864222-10012-31000121499951784388885166157899986664206805999983
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADV-AKGEI-GGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~-~~~e~-ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
|+++|.-..|||+|+-.+....- ..... -|+..+..-..+......+.+.||+|.+.|.+|+..-..-+|++|||.|+
T Consensus 3 ivlvGd~~VGKTsLi~rf~~~~F~~~y~~Tig~d~~~k~i~v~~~~v~l~iwDtaGqe~f~~~~~~y~~~a~~~ilvfDi 82 (182)
T cd04128 3 IGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDL 82 (182)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 99999999898999999953999999888733898999999999999999986776487899999986478789999978
Q ss_pred CCCCCHHHHHHHHH----HHH--CCCCEEEECCCCCCCCCCCCHHHHHHHC-CCCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 66740235777898----997--0994156123312443320002210000-1320001234740363110024774112
Q gi|254780787|r 464 DEEIMPQAIESINH----AKA--ADVSIIVAINKIDKLGADPQKVRMSLLK-HDVFVESMGGDILDVEISAKNNLNLDKL 536 (884)
Q Consensus 464 ~~g~~~qt~e~~~~----~~~--~~~p~iva~nk~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (884)
.+ ++|.+++.. ++. ...+.|++-||+|+..........+... ...+...+ +..++.+||+++.|++++
T Consensus 83 t~---~~Sf~~~~~w~~~i~~~~~~~~~ilVGnK~DL~~~~~~~~~~~~~~~~~~~a~~~--~~~f~etSAk~~~nV~e~ 157 (182)
T cd04128 83 TR---KSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAM--KAPLIFCSTSHSINVQKI 157 (182)
T ss_pred CC---HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHEEHHHHHHHHHHHHC--CCEEEEEECCCCCCHHHH
T ss_conf 99---8999989999999997689998899998663556556223102489999999984--998999947999798999
Q ss_pred CCCHH
Q ss_conf 21000
Q gi|254780787|r 537 LDAIL 541 (884)
Q Consensus 537 ~~~~~ 541 (884)
++.++
T Consensus 158 F~~i~ 162 (182)
T cd04128 158 FKIVL 162 (182)
T ss_pred HHHHH
T ss_conf 99999
No 158
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.18 E-value=1.5e-10 Score=90.11 Aligned_cols=150 Identities=18% Similarity=0.174 Sum_probs=97.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEE----ECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8986236850446777886422210012310001214999----517843888851661578999866642068059999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQV----AYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVL 461 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~----~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv 461 (884)
|+++|.-..|||+|+-.+.+..-.... ...++.+.. ......+.+.||+|.+.|..++..-..-+|.+|||.
T Consensus 3 iv~vGd~~VGKTsli~r~~~~~F~~~~----~~t~~~~~~~~~~~~~~v~l~i~DtaG~e~~~~~~~~~~~~a~~~ilvy 78 (166)
T cd01893 3 IVLIGDEGVGKSSLIMSLVSEEFPENV----PRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCC----CCCCCCEEEEEEECCEEEEEEEEECCCCCCCCHHHHHHHCCCCEEEEEE
T ss_conf 999999998999999999849788877----7634568999998890999999989987230245798736898899997
Q ss_pred ECCCCCCHHHHHH--HHHHH--HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 8366740235777--89899--7099415612331244332000221000013200012347403631100247741122
Q gi|254780787|r 462 AADEEIMPQAIES--INHAK--AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLL 537 (884)
Q Consensus 462 ~~~~g~~~qt~e~--~~~~~--~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (884)
|+.+----+-+.. +..++ ..++|+|++-||+|+........... ........+......+.+||++|+|+++++
T Consensus 79 dit~~~Sf~~i~~~w~~~i~~~~~~~piilvGNK~DL~~~r~~~~~e~--~~~~~~~~~~~~~~~~EtSAktg~nV~e~F 156 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEE--EMLPIMNEFREIETCVECSAKTLINVSEVF 156 (166)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHH--HHHHHHHHHCCCCEEEEECCCCCCCHHHHH
T ss_conf 089877899999999999998689996899998865400250335889--999999973074889990658891989999
Q ss_pred CCHH
Q ss_conf 1000
Q gi|254780787|r 538 DAIL 541 (884)
Q Consensus 538 ~~~~ 541 (884)
+.+.
T Consensus 157 ~~~~ 160 (166)
T cd01893 157 YYAQ 160 (166)
T ss_pred HHHH
T ss_conf 9999
No 159
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.18 E-value=1.2e-10 Score=90.91 Aligned_cols=143 Identities=17% Similarity=0.210 Sum_probs=96.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE-----EEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89862368504467778864222100123100012149-----9951784388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY-----QVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~-----~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
|+++|--..|||+|+-.+.+......- ...||.. .+......+.+.||+|++.|..|+..-..-+|++|||
T Consensus 3 vvlvGd~~VGKTsli~r~~~~~F~~~y----~pTi~~~~~~~~~~~~~~v~l~iwDtaG~e~~~~l~~~~~~~a~~~ilv 78 (164)
T cd04139 3 VIVVGAGGVGKSALTLQFMYDEFVEDY----EPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLV 78 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCC----CCCCCCEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHCCEEEEE
T ss_conf 999999998899999999719898774----8854416899999999999999998988662488999988637688999
Q ss_pred EECCCCCCHHHHHHHH-----HHH---HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 9836674023577789-----899---70994156123312443320002210000132000123474036311002477
Q gi|254780787|r 461 LAADEEIMPQAIESIN-----HAK---AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLN 532 (884)
Q Consensus 461 v~~~~g~~~qt~e~~~-----~~~---~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (884)
.|+.+ ++|.+++. +.+ ..++|+|++.||+|+.... .+..+... .+...+ +..++.+||++|.|
T Consensus 79 ydvt~---~~Sf~~~~~~~~~~~~~~~~~~~piilVgNK~DL~~~r--~v~~~e~~--~~a~~~--~~~~~E~SAk~g~n 149 (164)
T cd04139 79 FSITD---MESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKR--QVSSEEAA--NLARQW--GVPYVETSAKTRQN 149 (164)
T ss_pred EECCC---HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHCC--CCCHHHHH--HHHHHC--CCEEEEECCCCCCC
T ss_conf 97797---78899999999999986087886369873303233417--78999999--999983--99899982687908
Q ss_pred CCCCCCCHH
Q ss_conf 411221000
Q gi|254780787|r 533 LDKLLDAIL 541 (884)
Q Consensus 533 ~~~~~~~~~ 541 (884)
+++++..+.
T Consensus 150 V~~~F~~l~ 158 (164)
T cd04139 150 VEKAFYDLV 158 (164)
T ss_pred HHHHHHHHH
T ss_conf 899999999
No 160
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.18 E-value=2e-10 Score=89.23 Aligned_cols=152 Identities=18% Similarity=0.241 Sum_probs=95.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHH-HCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 898623685044677788642221-0012310001214999517843888851661578999866642068059999836
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVA-KGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAAD 464 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~-~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~ 464 (884)
|.++|.-..|||+|+-.+-+.... ....-....+.-...+......+.|.||.|++.|..||..--.-+|++|||.|+.
T Consensus 3 iv~vGd~~VGKTsli~rf~~~~f~~~y~pTi~~~~~~~i~v~~~~~~l~i~DTaG~e~~~~~~~~~~~~a~~~ilvydi~ 82 (174)
T cd04135 3 CVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVV 82 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCCCCHHHHHHHHCCCCEEEEEEECC
T ss_conf 99999899859999999962989988688575202279999999999999979764031556599855787678984379
Q ss_pred CCCCHHHHHHHH-----HHH--HCCCCEEEECCCCCCCCCCCCHHHH------H-HH-CCCCCCCCCCCCCEEEEEEECC
Q ss_conf 674023577789-----899--7099415612331244332000221------0-00-0132000123474036311002
Q gi|254780787|r 465 EEIMPQAIESIN-----HAK--AADVSIIVAINKIDKLGADPQKVRM------S-LL-KHDVFVESMGGDILDVEISAKN 529 (884)
Q Consensus 465 ~g~~~qt~e~~~-----~~~--~~~~p~iva~nk~d~~~~~~~~~~~------~-~~-~~~~~~~~~~~~~~~~~~~~~~ 529 (884)
+ +++.+.+. .++ ..++|+|++-||+|+.......... . -. +...+..++ +-..++.+||++
T Consensus 83 ~---~~Sf~~~~~~w~~~~~~~~~~~piilvgnK~DL~~~~~~~~~~~~~~~r~Vs~eeg~~~A~~~-g~~~f~E~SAkt 158 (174)
T cd04135 83 N---PASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEI-GAHCYVECSALT 158 (174)
T ss_pred C---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHC-CCCEEEEECCCC
T ss_conf 7---788999999999999986849988999685230044345545300457663999999999977-998999905487
Q ss_pred CCCCCCCCCCHH
Q ss_conf 477411221000
Q gi|254780787|r 530 NLNLDKLLDAIL 541 (884)
Q Consensus 530 ~~~~~~~~~~~~ 541 (884)
|+|++++++.+.
T Consensus 159 ~~nV~e~F~~~i 170 (174)
T cd04135 159 QKGLKTVFDEAI 170 (174)
T ss_pred CCCHHHHHHHHH
T ss_conf 949899999999
No 161
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=99.18 E-value=4.1e-10 Score=87.14 Aligned_cols=127 Identities=23% Similarity=0.305 Sum_probs=85.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHH-H--HHHHCCCCEE
Q ss_conf 530389862368504467778864222100123100012149995178438888516615789998-6--6642068059
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMR-A--RGARVTDIAV 458 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r-~--rg~~~~d~~i 458 (884)
..|-|-++|=-+.|||+|+-.|........-. -|.-+++....+..+..++++|+|||..+-..- . ...+.+..+|
T Consensus 2 ~~ptvLllGl~~sGKT~Lf~~L~~~~~~~T~t-S~~~n~~~~~~~~~~~~~~lvD~PGh~klR~~~~~~~~~~~~~~gIV 80 (181)
T pfam09439 2 SQPAVIIAGLCDSGKTSLFTLLTTGSVRKTVT-SQEPSAAYKYMNNKGNSLTLIDFPGHVKLRYKLLETLKDSSSLRGLV 80 (181)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCEEC-CCCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 98869998689998999999997599487588-86786406875168966899988996899999998643002644999
Q ss_pred EEEECC--CCCCHHHHHHHHHH------HHCCCCEEEECCCCCCCCCCCCHHHHHHHCC
Q ss_conf 999836--67402357778989------9709941561233124433200022100001
Q gi|254780787|r 459 LVLAAD--EEIMPQAIESINHA------KAADVSIIVAINKIDKLGADPQKVRMSLLKH 509 (884)
Q Consensus 459 lvv~~~--~g~~~qt~e~~~~~------~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~ 509 (884)
.|||+. ..-...+.|-+.-+ ...++|++||+||.|.+.+-+.......++.
T Consensus 81 fVVDS~~~~~~l~~~Ae~Ly~iL~~~~~~~~~vPvLI~cNKqDl~~A~~~~~Ik~~LEk 139 (181)
T pfam09439 81 FVVDSTAFPKEVTDTAEFLYDILSITELLKNGIDILIACNKQEIFTARPPKKIKQALEK 139 (181)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHCHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 99978665667999999999998445433689978999737463357799999999999
No 162
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.18 E-value=2e-10 Score=89.26 Aligned_cols=150 Identities=21% Similarity=0.281 Sum_probs=99.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCC--CCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 8986236850446777886422210012--31000121499951784388885166157899986664206805999983
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEI--GGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~--ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
|+|+|--..|||+|+.++.+..-..... -|+.-++-...+......+.|.||+|++.|..++..-..-+|++|||.|+
T Consensus 3 ivvvG~~~vGKTSLi~r~~~~~f~~~y~pTig~~~~~k~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~ad~~ilvydi 82 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDV 82 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEECC
T ss_conf 99999599568999999963999998589765577799999999999999998999764789999998747788999508
Q ss_pred CCCCCHHHHHHHH-HHH--------HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 6674023577789-899--------7099415612331244332000221000013200012347403631100247741
Q gi|254780787|r 464 DEEIMPQAIESIN-HAK--------AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLD 534 (884)
Q Consensus 464 ~~g~~~qt~e~~~-~~~--------~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (884)
.+----+.+..+. .++ ...+|++++-||+|..... .+..+. ...+...+ +..++.+||++|+|++
T Consensus 83 t~~~Sf~~l~~w~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r--~v~~~~--~~~~a~~~--~~~~~E~Sak~g~~V~ 156 (168)
T cd04119 83 TDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHR--AVSEDE--GRLWAESK--GFKYFETSACTGEGVN 156 (168)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCC--CCCHHH--HHHHHHHC--CCEEEEECCCCCCCHH
T ss_conf 97444899999999999982453456686299985403444257--889999--99999986--9989998857790889
Q ss_pred CCCCCHH
Q ss_conf 1221000
Q gi|254780787|r 535 KLLDAIL 541 (884)
Q Consensus 535 ~~~~~~~ 541 (884)
++++.++
T Consensus 157 e~F~~l~ 163 (168)
T cd04119 157 EMFQTLF 163 (168)
T ss_pred HHHHHHH
T ss_conf 9999999
No 163
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.17 E-value=1.4e-10 Score=90.41 Aligned_cols=144 Identities=19% Similarity=0.277 Sum_probs=95.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE----EEECC--CCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 89862368504467778864222100123100012149----99517--8438888516615789998666420680599
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY----QVAYQ--GKNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~----~~~~~--~~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
|+++|--..|||+|+..+..-.-..... ..||.. .+..+ ...+.+.||+|.+.|..|+..=..-+|++||
T Consensus 6 iv~lGd~~vGKTsli~r~~~~~f~~~~~----~Ti~~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~l~~~~~~~a~~~il 81 (165)
T cd01864 6 IILIGDSNVGKTCVVQRFKSGTFSERQG----NTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCC----CCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCHHHEECCCEEEE
T ss_conf 9999999958999999996499999879----975437899999999999999999899983445350755221566699
Q ss_pred EEECCCCCCHHHHHHHH----HHH---HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 99836674023577789----899---70994156123312443320002210000132000123474036311002477
Q gi|254780787|r 460 VLAADEEIMPQAIESIN----HAK---AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLN 532 (884)
Q Consensus 460 vv~~~~g~~~qt~e~~~----~~~---~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (884)
|.|+.+ +++.+.+. .++ ..++|+|++-||+|+.... .+..+... .+...+ +..+...+||++|.|
T Consensus 82 vydit~---~~Sf~~~~~w~~~i~~~~~~~~~iilVGNK~DL~~~r--~V~~~~~~--~~a~~~-~~~~~~E~SAk~~~n 153 (165)
T cd01864 82 AYDITR---RSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQR--EVLFEEAC--TLAEKN-GMLAVLETSAKESQN 153 (165)
T ss_pred EECCCC---HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHC--CCCHHHHH--HHHHHC-CCCEEEEECCCCCCC
T ss_conf 713899---8999999999999998769998438887723768628--99999999--999983-997699978885819
Q ss_pred CCCCCCCHH
Q ss_conf 411221000
Q gi|254780787|r 533 LDKLLDAIL 541 (884)
Q Consensus 533 ~~~~~~~~~ 541 (884)
+++++..+.
T Consensus 154 V~e~F~~la 162 (165)
T cd01864 154 VEEAFLLMA 162 (165)
T ss_pred HHHHHHHHH
T ss_conf 899999999
No 164
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.17 E-value=2.7e-10 Score=88.36 Aligned_cols=156 Identities=20% Similarity=0.225 Sum_probs=97.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHH-CCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 8986236850446777886422210-012310001214999517843888851661578999866642068059999836
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAK-GEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAAD 464 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~-~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~ 464 (884)
|.++|.-..|||+|+-.+.+..... ..+-......-...+......+.|.||.|++.|..||..--.-+|++|||.|++
T Consensus 3 ivlvGd~~VGKTsli~r~~~~~F~~~y~~Ti~~~~~~~~~v~~~~v~l~iwDTaGqe~~~~i~~~~y~~a~~~ilvydi~ 82 (189)
T cd04134 3 VVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVD 82 (189)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCHHHHHHHCCCCEEEEEEECC
T ss_conf 99999799769999999970999998688378999999999999999999847785000035567643786459999789
Q ss_pred CCCCHHHHHH--HHHHHH--CCCCEEEECCCCCCCCCCCCHHHHHHHCCC-------CCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 6740235777--898997--099415612331244332000221000013-------20001234740363110024774
Q gi|254780787|r 465 EEIMPQAIES--INHAKA--ADVSIIVAINKIDKLGADPQKVRMSLLKHD-------VFVESMGGDILDVEISAKNNLNL 533 (884)
Q Consensus 465 ~g~~~qt~e~--~~~~~~--~~~p~iva~nk~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 533 (884)
+---=+.+.. +..++. -++|+|++.||+|+................ .......+...++.+||+++.|+
T Consensus 83 ~~~Sf~~v~~~w~~~i~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~~is~~eg~~~Ak~~~~~~y~EtSAkt~~nV 162 (189)
T cd04134 83 SPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGV 162 (189)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 87899999999999999749799789999880046532356777663046658999999999829978999680679498
Q ss_pred CCCCCCHH
Q ss_conf 11221000
Q gi|254780787|r 534 DKLLDAIL 541 (884)
Q Consensus 534 ~~~~~~~~ 541 (884)
++++..+.
T Consensus 163 ~e~F~~la 170 (189)
T cd04134 163 NEAFTEAA 170 (189)
T ss_pred HHHHHHHH
T ss_conf 99999999
No 165
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.17 E-value=1.8e-10 Score=89.50 Aligned_cols=146 Identities=21% Similarity=0.227 Sum_probs=96.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE---EEECCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89862368504467778864222100123100012149---995178--4388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY---QVAYQG--KNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~---~~~~~~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
|+++|.-..|||+|+-.+.+..-...-. -.||.+ .+..++ ..+.+.||+|++.|..|+..-..-+|++|||
T Consensus 4 ivllGd~~VGKTsli~r~~~~~f~~~y~----pTi~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~a~~~ilv 79 (163)
T cd04176 4 VVVLGSGGVGKSALTVQFVSGTFIEKYD----PTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCC----CCCCCEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 9998999978999999997098997558----852331679999888999999998988542567889985578656897
Q ss_pred EECCCCCCHHHHHHHH--HHH---HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 9836674023577789--899---70994156123312443320002210000132000123474036311002477411
Q gi|254780787|r 461 LAADEEIMPQAIESIN--HAK---AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDK 535 (884)
Q Consensus 461 v~~~~g~~~qt~e~~~--~~~---~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (884)
.|+.+---=+.+..|. +.+ ..++|+|++-||+|+.... .+..+.. ..+...+ +..++.+||+++.|+++
T Consensus 80 ydit~~~Sf~~l~~~~~~i~~~~~~~~~piilVgNK~DL~~~r--~V~~~e~--~~~a~~~--~~~~~E~SAk~~~nV~~ 153 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESER--EVSSAEG--RALAEEW--GCPFMETSAKSKTMVNE 153 (163)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC--CCCHHHH--HHHHHHC--CCEEEEECCCCCCCHHH
T ss_conf 1279889999999999999997389996399974313400127--6999999--9999985--99899985687817799
Q ss_pred CCCCHH
Q ss_conf 221000
Q gi|254780787|r 536 LLDAIL 541 (884)
Q Consensus 536 ~~~~~~ 541 (884)
++..+.
T Consensus 154 ~F~~l~ 159 (163)
T cd04176 154 LFAEIV 159 (163)
T ss_pred HHHHHH
T ss_conf 999999
No 166
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.16 E-value=1.7e-10 Score=89.82 Aligned_cols=144 Identities=19% Similarity=0.254 Sum_probs=97.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE---EEECC--CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89862368504467778864222100123100012149---99517--84388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY---QVAYQ--GKNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~---~~~~~--~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
|+++|.-..|||+|+-.+-+......- ...||.+ .+..+ ...+.+.||+|++.|..|+..-..-+|.+|||
T Consensus 4 ivlvGd~~VGKTsli~rf~~~~f~~~y----~pTi~~~~~k~i~i~~~~~~l~iwDtaG~e~~~~~~~~~~~~a~~~ilv 79 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQNVFIESY----DPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCC----CCCCCCEEEEEEEECCEEEEEEEEECCCCCCCCCCHHHHHCCCCEEEEE
T ss_conf 999899997799999999619389865----8833315999999999999999982788623334515451268667985
Q ss_pred EECCCCCCHHHHHHHHHH-----H---HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 983667402357778989-----9---70994156123312443320002210000132000123474036311002477
Q gi|254780787|r 461 LAADEEIMPQAIESINHA-----K---AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLN 532 (884)
Q Consensus 461 v~~~~g~~~qt~e~~~~~-----~---~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (884)
.|+.+ ++|.+.+... + ..++|+|++-||+|+..... +..+ +.......+ +...+..+||+++.|
T Consensus 80 ydvt~---~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~DL~~~r~--v~~~--e~~~~a~~~-~~~~~~E~SAk~~~n 151 (168)
T cd04177 80 YSVTS---EASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQ--VSRE--DGVSLSQQW-GNVPFYETSARKRTN 151 (168)
T ss_pred CCCCC---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCC--CCHH--HHHHHHHHC-CCCEEEEECCCCCCC
T ss_conf 36898---889999999999999851788874898873146121376--8999--999999974-997799962487846
Q ss_pred CCCCCCCHH
Q ss_conf 411221000
Q gi|254780787|r 533 LDKLLDAIL 541 (884)
Q Consensus 533 ~~~~~~~~~ 541 (884)
++++++.+.
T Consensus 152 V~e~F~~l~ 160 (168)
T cd04177 152 VDEVFIDLV 160 (168)
T ss_pred HHHHHHHHH
T ss_conf 899999999
No 167
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.16 E-value=1.2e-10 Score=90.81 Aligned_cols=152 Identities=16% Similarity=0.243 Sum_probs=93.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHH-HCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 898623685044677788642221-0012310001214999517843888851661578999866642068059999836
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVA-KGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAAD 464 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~-~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~ 464 (884)
|+++|--..|||+|+-+..+..-. ....-....+.-...+......+.|.||+|++.|..||.---.-+|.+|||.|+.
T Consensus 1 ivllGd~~VGKTsli~r~~~~~f~~~y~~Ti~~~~~~~~~~~~~~~~l~i~DtaG~e~~~~l~~~~~~~a~~~ilvydvt 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCHHHCCCCCEEEEEEECC
T ss_conf 59989789759999999953989998578505789999999999999999948987034545001104886899997589
Q ss_pred CCCCHHHHHHHH-----HHH--HCCCCEEEECCCCCCCCCCCCHHHH--H----H-HCCC-CCCCCCCCCCEEEEEEECC
Q ss_conf 674023577789-----899--7099415612331244332000221--0----0-0013-2000123474036311002
Q gi|254780787|r 465 EEIMPQAIESIN-----HAK--AADVSIIVAINKIDKLGADPQKVRM--S----L-LKHD-VFVESMGGDILDVEISAKN 529 (884)
Q Consensus 465 ~g~~~qt~e~~~-----~~~--~~~~p~iva~nk~d~~~~~~~~~~~--~----~-~~~~-~~~~~~~~~~~~~~~~~~~ 529 (884)
+= +|.+.+. .++ ..++|+|++-||+|+.......... . . .+.+ .+...+ +...++.+||++
T Consensus 81 ~~---~Sf~~~~~~w~~~i~~~~~~~piilVgnK~DL~~~~~~~~~~~~~~~~~Vs~~~~~~~a~~~-~~~~y~EtSAk~ 156 (174)
T smart00174 81 SP---ASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRI-GAVKYLECSALT 156 (174)
T ss_pred CH---HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHC-CCCEEEEECCCC
T ss_conf 87---89999999899999986889869999875425012333545533146500299999999983-997899964588
Q ss_pred CCCCCCCCCCHH
Q ss_conf 477411221000
Q gi|254780787|r 530 NLNLDKLLDAIL 541 (884)
Q Consensus 530 ~~~~~~~~~~~~ 541 (884)
|.|++++++.+.
T Consensus 157 g~nV~e~F~~l~ 168 (174)
T smart00174 157 QEGVREVFEEAI 168 (174)
T ss_pred CCCHHHHHHHHH
T ss_conf 949899999999
No 168
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.16 E-value=3.3e-10 Score=87.81 Aligned_cols=143 Identities=21% Similarity=0.248 Sum_probs=97.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEE---EECCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 898623685044677788642221001231000121499---95178--4388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQ---VAYQG--KNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~---~~~~~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
|+++|--..|||+|+-.+.+......-.- | ||.++ +..++ ..+.+.||+|++.|..|+..-..-+|.+|||
T Consensus 4 ivllGd~~VGKTsli~r~~~~~f~~~y~~--T--i~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~~~~~y~~~a~~~ilv 79 (163)
T cd04136 4 VVVLGSGGVGKSALTVQFVQGIFVEKYDP--T--IEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCC--C--CCCEEEEEEEECCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 99989999889999999971959886699--5--4206999999999999998645765445556789883468769997
Q ss_pred EECCCCCCHHHHHHHHHHH--------HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 9836674023577789899--------70994156123312443320002210000132000123474036311002477
Q gi|254780787|r 461 LAADEEIMPQAIESINHAK--------AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLN 532 (884)
Q Consensus 461 v~~~~g~~~qt~e~~~~~~--------~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (884)
.|+.+ ++|.+.+.... ..++|+|++-||+|+.... .+..+. ...+...++ ..++.+||+++.|
T Consensus 80 ydvt~---~~Sf~~l~~~~~~i~~~~~~~~~piilVGnK~Dl~~~r--~v~~~~--~~~~a~~~~--~~~~E~SAk~~~n 150 (163)
T cd04136 80 YSITS---QSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDER--VVSREE--GQALARQWG--CPFYETSAKSKIN 150 (163)
T ss_pred ECCCC---HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHC--CCCHHH--HHHHHHHCC--CEEEEECCCCCCC
T ss_conf 04898---89999999999999986188888678762354726407--899999--999999849--9899974487805
Q ss_pred CCCCCCCHH
Q ss_conf 411221000
Q gi|254780787|r 533 LDKLLDAIL 541 (884)
Q Consensus 533 ~~~~~~~~~ 541 (884)
+++++..+.
T Consensus 151 V~e~F~~l~ 159 (163)
T cd04136 151 VDEVFADLV 159 (163)
T ss_pred HHHHHHHHH
T ss_conf 899999999
No 169
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.16 E-value=1.3e-10 Score=90.47 Aligned_cols=150 Identities=20% Similarity=0.248 Sum_probs=97.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEC--CCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 8986236850446777886422210012310001--21499951784388885166157899986664206805999983
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQH--IGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~--iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
|+|+|.-..|||+|+.++.+..........|.-. .-.+.+......+.+.||+|++.|..++..-..-+|.+|||.|+
T Consensus 3 i~vvG~~~vGKTsli~r~~~~~f~~~~~~ti~~~~~~k~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv~d~ 82 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDI 82 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCHHHEECCCEEEEEEEC
T ss_conf 99999999679999999983989987677526479999999999999999995899730355631330114457999638
Q ss_pred CCCCCHHHHHHH----HHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 667402357778----9899709941561233124433200022100001320001234740363110024774112210
Q gi|254780787|r 464 DEEIMPQAIESI----NHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDA 539 (884)
Q Consensus 464 ~~g~~~qt~e~~----~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (884)
.+----+.++.+ ......++|+|++-||+|..... .+..+ +...+...++ ...+.+||++|.|+++++..
T Consensus 83 t~~~Sf~~i~~~~~~i~~~~~~~~~iilvgnK~Dl~~~r--~v~~~--e~~~~a~~~~--~~y~e~Sak~g~nV~e~F~~ 156 (162)
T cd04123 83 TDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQR--VVSKS--EAEEYAKSVG--AKHFETSAKTGKGIEELFLS 156 (162)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHC--CCCHH--HHHHHHHHCC--CEEEEEECCCCCCHHHHHHH
T ss_conf 998999999999999998769997468663321325408--88999--9999999829--98999812788198999999
Q ss_pred HH
Q ss_conf 00
Q gi|254780787|r 540 IL 541 (884)
Q Consensus 540 ~~ 541 (884)
+.
T Consensus 157 l~ 158 (162)
T cd04123 157 LA 158 (162)
T ss_pred HH
T ss_conf 99
No 170
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.15 E-value=2.4e-10 Score=88.70 Aligned_cols=143 Identities=21% Similarity=0.288 Sum_probs=95.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE----EEECCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 89862368504467778864222100123100012149----995178--438888516615789998666420680599
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY----QVAYQG--KNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~----~~~~~~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
|+|+|.-..|||+|+-++........ ....||.. .+..++ ..+.+.||+|++.|..|+..-..-+|++||
T Consensus 4 ivviGd~~vGKTsli~r~~~~~f~~~----~~~Tig~~~~~k~i~~~~~~v~l~iwDtaG~e~~~~~~~~~~~~a~~~il 79 (163)
T cd01860 4 LVLLGDSSVGKSSLVLRFVKNEFSEN----QESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIV 79 (163)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCCEEE
T ss_conf 99999599689999999943989998----68866678899999999999999999799971002788988516771499
Q ss_pred EEECCCCCCHHHHHHHH----HHHH---CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 99836674023577789----8997---0994156123312443320002210000132000123474036311002477
Q gi|254780787|r 460 VLAADEEIMPQAIESIN----HAKA---ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLN 532 (884)
Q Consensus 460 vv~~~~g~~~qt~e~~~----~~~~---~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (884)
|.|+.+ +++.+.+. .++. ..+|++++-||+|+.... .+..+... .+...+ +...+.+||++|.|
T Consensus 80 vydit~---~~Sf~~~~~w~~~i~~~~~~~~~iilVgnK~DL~~~r--~V~~~e~~--~~a~~~--~~~~~E~SAk~~~n 150 (163)
T cd01860 80 VYDITS---EESFEKAKSWVKELQRNASPNIIIALVGNKADLESKR--QVSTEEAQ--EYADEN--GLLFFETSAKTGEN 150 (163)
T ss_pred EEECCC---HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCC--CCCHHHHH--HHHHHC--CCEEEEECCCCCCC
T ss_conf 981899---7999999999999998559872367755335756508--99999999--999982--99799986265907
Q ss_pred CCCCCCCHH
Q ss_conf 411221000
Q gi|254780787|r 533 LDKLLDAIL 541 (884)
Q Consensus 533 ~~~~~~~~~ 541 (884)
++++++.+.
T Consensus 151 V~e~F~~l~ 159 (163)
T cd01860 151 VNELFTEIA 159 (163)
T ss_pred HHHHHHHHH
T ss_conf 899999999
No 171
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.15 E-value=1.7e-10 Score=89.83 Aligned_cols=146 Identities=20% Similarity=0.265 Sum_probs=94.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCE------EEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 8986236850446777886422210012310001214------9995178438888516615789998666420680599
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGA------YQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga------~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
|+++|.-..|||+|+.++....-...- ...||. ..+......+.|.||+|++.|..|+..=..-+|++||
T Consensus 6 iv~iGd~~VGKTsli~r~~~~~f~~~~----~~Tig~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~a~~~il 81 (165)
T cd01868 6 IVLIGDSGVGKSNLLSRFTRNEFNLDS----KSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCC----CCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 999999997899999999729899988----9874478789999999999999999899972126789987332051489
Q ss_pred EEECCCCCCHHHHHHH-HHHHH---CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 9983667402357778-98997---0994156123312443320002210000132000123474036311002477411
Q gi|254780787|r 460 VLAADEEIMPQAIESI-NHAKA---ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDK 535 (884)
Q Consensus 460 vv~~~~g~~~qt~e~~-~~~~~---~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (884)
|.|+.+--.-+-++.| ..++. .++|+|++-||+|+.... .+..+.... +.... +..++.+||++|.|+++
T Consensus 82 vydit~~~Sf~~i~~w~~~i~~~~~~~~~iilVgnK~DL~~~r--~Vs~~e~~~--~a~~~--~~~~~E~SAk~g~nV~e 155 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLR--AVPTEEAKA--FAEKN--GLSFIETSALDGTNVEE 155 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHC--CCCHHHHHH--HHHHC--CCEEEEECCCCCCCHHH
T ss_conf 8626988999999999999998555773598702347868857--888999999--99985--99799967888929899
Q ss_pred CCCCHH
Q ss_conf 221000
Q gi|254780787|r 536 LLDAIL 541 (884)
Q Consensus 536 ~~~~~~ 541 (884)
+++.+.
T Consensus 156 ~F~~l~ 161 (165)
T cd01868 156 AFKQLL 161 (165)
T ss_pred HHHHHH
T ss_conf 999999
No 172
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.15 E-value=1.5e-10 Score=90.17 Aligned_cols=149 Identities=19% Similarity=0.215 Sum_probs=94.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHH-CCC-CCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 8986236850446777886422210-012-31000121499951784388885166157899986664206805999983
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAK-GEI-GGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~-~e~-ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
|+++|.-..|||+|+.++....... ... =|+....-...+......+.+.||+|++.|..++..-..-+|++|||.|+
T Consensus 3 ivl~Gd~~vGKTsli~r~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~a~~~ilvydi 82 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDI 82 (161)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 99999499679999999972989998799764578999999999999999998999701226789984057778995368
Q ss_pred CCCCCHHHHHHH-HHHH---HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 667402357778-9899---709941561233124433200022100001320001234740363110024774112210
Q gi|254780787|r 464 DEEIMPQAIESI-NHAK---AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDA 539 (884)
Q Consensus 464 ~~g~~~qt~e~~-~~~~---~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (884)
.+--.-+.+..| ..++ ..++|+|++-||+|+..... +..+.. ..+...+ +..++.+||++|.|+++++..
T Consensus 83 t~~~Sf~~~~~w~~~i~~~~~~~~~iilVgNK~Dl~~~r~--V~~~e~--~~~a~~~--~~~~~E~SAk~~~nV~e~F~~ 156 (161)
T cd04113 83 TNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQRE--VTFLEA--SRFAQEN--GLLFLETSALTGENVEEAFLK 156 (161)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHCCC--CCHHHH--HHHHHHC--CCEEEEECCCCCCCHHHHHHH
T ss_conf 9889999999999999986799964986034344000378--899999--9999985--997999741569058999999
Q ss_pred H
Q ss_conf 0
Q gi|254780787|r 540 I 540 (884)
Q Consensus 540 ~ 540 (884)
+
T Consensus 157 l 157 (161)
T cd04113 157 C 157 (161)
T ss_pred H
T ss_conf 9
No 173
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.15 E-value=1.9e-10 Score=89.41 Aligned_cols=146 Identities=20% Similarity=0.210 Sum_probs=96.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCE------EEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 8986236850446777886422210012310001214------9995178438888516615789998666420680599
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGA------YQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga------~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
|+++|.-..|||+|+.++.+..-...- ...||. +.+......+.|.||+|++.|..++..-..-+|.+||
T Consensus 6 ivlvGd~~vGKTsli~r~~~~~f~~~~----~~Tig~~~~~k~v~~~~~~i~l~iwDt~G~e~~~~~~~~y~~~a~~~il 81 (167)
T cd01867 6 LLLIGDSGVGKSCLLLRFSEDSFNPSF----ISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCC----CCCCCEEEEEEEEEECCEEEEEEEEECCCCCCHHHHHHHHHHHCCEEEE
T ss_conf 999999997889999999609999986----8986468899999999999999999899970011667998565058899
Q ss_pred EEECCCCCCHHHHHHH-HHHHH---CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 9983667402357778-98997---0994156123312443320002210000132000123474036311002477411
Q gi|254780787|r 460 VLAADEEIMPQAIESI-NHAKA---ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDK 535 (884)
Q Consensus 460 vv~~~~g~~~qt~e~~-~~~~~---~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (884)
|.|+.+=---+.+..| ..+.. .++|+|++.||+|+..... +..+... .+...+ +..++.+||++|.|+++
T Consensus 82 vfdit~~~Sf~~~~~w~~~i~~~~~~~~~~ilVgNK~Dl~~~r~--v~~~e~~--~~a~~~--~~~~~e~SAktg~nI~e 155 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRV--VSKEEGE--ALADEY--GIKFLETSAKANINVEE 155 (167)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHCCC--CCHHHHH--HHHHHH--CCEEEEECCCCCCCHHH
T ss_conf 55689879999999999999986699970576421245023077--9999999--999980--99699982257907899
Q ss_pred CCCCHH
Q ss_conf 221000
Q gi|254780787|r 536 LLDAIL 541 (884)
Q Consensus 536 ~~~~~~ 541 (884)
+++.+.
T Consensus 156 ~F~~l~ 161 (167)
T cd01867 156 AFFTLA 161 (167)
T ss_pred HHHHHH
T ss_conf 999999
No 174
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.15 E-value=1.6e-10 Score=89.98 Aligned_cols=144 Identities=23% Similarity=0.303 Sum_probs=96.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEE----EECC--CCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 898623685044677788642221001231000121499----9517--8438888516615789998666420680599
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQ----VAYQ--GKNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~----~~~~--~~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
|.++|.-..|||+|+-.+.......+. ..-.||... +..+ ...+.|.||+|++.|..|+..=..-+|++||
T Consensus 3 Iv~vGd~~VGKTsli~r~~~~~f~~~~---~~~Ti~~~~~~k~~~~~~~~v~l~iwDtaG~e~~~~l~~~~~~~a~~~il 79 (191)
T cd04112 3 VMLLGDSGVGKTCLLVRFKDGAFLNGN---FIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLL 79 (191)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCC---CCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHHHHHCCCEEEE
T ss_conf 999994998799999999959789998---67765247799999999999999999799863346464777117777899
Q ss_pred EEECCCCCCHHHHHHHH----HHH---HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 99836674023577789----899---70994156123312443320002210000132000123474036311002477
Q gi|254780787|r 460 VLAADEEIMPQAIESIN----HAK---AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLN 532 (884)
Q Consensus 460 vv~~~~g~~~qt~e~~~----~~~---~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (884)
|.|+.+ +++.+.+. .++ ..++|+|++-||+|+... ..+..+... .+...+ +..++.+||+++.|
T Consensus 80 vydit~---~~Sf~~l~~w~~~i~~~~~~~~~iilVGNK~DL~~~--r~V~~~e~~--~~a~~~--~~~f~EtSAkt~~n 150 (191)
T cd04112 80 LYDITN---KASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGE--RVVKREDGE--RLAKEY--GVPFMETSAKTGLN 150 (191)
T ss_pred EEECCC---HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC--CCCCHHHHH--HHHHHC--CCEEEEECCCCCCC
T ss_conf 972798---899999999999999866678538986124655302--679999999--999982--99799985489809
Q ss_pred CCCCCCCHH
Q ss_conf 411221000
Q gi|254780787|r 533 LDKLLDAIL 541 (884)
Q Consensus 533 ~~~~~~~~~ 541 (884)
+++++..+.
T Consensus 151 I~e~F~~i~ 159 (191)
T cd04112 151 VELAFTAVA 159 (191)
T ss_pred HHHHHHHHH
T ss_conf 799999999
No 175
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.14 E-value=2.3e-10 Score=88.90 Aligned_cols=145 Identities=19% Similarity=0.212 Sum_probs=96.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHH-CCCCCCEECCCE-----EEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 8986236850446777886422210-012310001214-----9995178438888516615789998666420680599
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAK-GEIGGITQHIGA-----YQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~-~e~ggitq~iga-----~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
|+++|--..|||+|+-.+.+..... .+. | |+. ..+......+.+.||+|++.|..|+..-..-+|.+||
T Consensus 4 IvlvGd~~VGKTsli~r~~~~~f~~~y~~---T--i~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~a~~~il 78 (180)
T cd04137 4 IAVLGSRSVGKSSLTVQFVEGHFVESYYP---T--IENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYIL 78 (180)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCC---C--CCCCCCEEEEECCEEEEEEEEECCCCCCCCHHHHHHHHHCCEEEE
T ss_conf 99999899889999999970978998588---1--244113799999999999999899870100667999863557899
Q ss_pred EEECCCCCCHHHHHHHH-----HHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 99836674023577789-----8997099415612331244332000221000013200012347403631100247741
Q gi|254780787|r 460 VLAADEEIMPQAIESIN-----HAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLD 534 (884)
Q Consensus 460 vv~~~~g~~~qt~e~~~-----~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (884)
|.|+.+----+.++.|. .....++|+|++-||+|+...+. +..+ +...+...++ ..++.+||++|.|++
T Consensus 79 vydvt~~~Sf~~~~~~~~~~~~~~~~~~~piilVgNK~DL~~~r~--V~~~--e~~~~a~~~~--~~f~EtSAk~g~nV~ 152 (180)
T cd04137 79 VYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQ--VSTE--EGKELAESWG--AAFLESSARENENVE 152 (180)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHCC--CCHH--HHHHHHHHCC--CEEEEECCCCCCCHH
T ss_conf 974388788999999999999975888886797765346244078--8999--9999999839--989997768891989
Q ss_pred CCCCCHH
Q ss_conf 1221000
Q gi|254780787|r 535 KLLDAIL 541 (884)
Q Consensus 535 ~~~~~~~ 541 (884)
+++..+.
T Consensus 153 e~F~~l~ 159 (180)
T cd04137 153 EAFELLI 159 (180)
T ss_pred HHHHHHH
T ss_conf 9999999
No 176
>PTZ00132 GTP-binding nuclear protein; Provisional
Probab=99.14 E-value=3.5e-10 Score=87.61 Aligned_cols=140 Identities=18% Similarity=0.263 Sum_probs=96.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE----EEECCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 89862368504467778864222100123100012149----995178--438888516615789998666420680599
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY----QVAYQG--KNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~----~~~~~~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
|+++|.-..|||+|+-.+.+...... -...||+. .+..++ ..+.+.||+|++.|..|+..=-.-++.+||
T Consensus 9 IvllGd~~VGKTsLi~r~~~~~F~~~----y~pTig~d~~~~~~~~~~~~i~l~IwDTaGqe~f~sl~~~yyr~a~~~il 84 (209)
T PTZ00132 9 LILVGDGGVGKTTFVKRHLTGEFEKK----YIATLGVEVHPLKFYTNRGKICFNVWDTAGQEKFGGLRDGYYIKGQCAII 84 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCCHHHCCCCEEEE
T ss_conf 99999999678999999971996998----77760279899999999999999999899974455665144248988999
Q ss_pred EEECCCCCCHHHHHHHH----HHHH--CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 99836674023577789----8997--09941561233124433200022100001320001234740363110024774
Q gi|254780787|r 460 VLAADEEIMPQAIESIN----HAKA--ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNL 533 (884)
Q Consensus 460 vv~~~~g~~~qt~e~~~----~~~~--~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (884)
|.|+.+ .+|.+++. .+.. .++|+|++-||+|+.. ..+..+.. .+...+ +..++.+||++|.|+
T Consensus 85 VfDit~---~~SF~~l~~W~~ei~~~~~~ipivLVGNK~DL~~---r~V~~~~~---~~a~~~--~~~f~EtSAKtg~NV 153 (209)
T PTZ00132 85 MFDVTS---RITYKNVPNWHRDITRVCENIPIVLVGNKVDVKD---RQVKAKQI---TFHRKK--NLQYYDISAKSNYNF 153 (209)
T ss_pred EECCCC---HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC---CCCCHHHH---HHHHHC--CCEEEEEECCCCCCH
T ss_conf 843788---7899999999999998689987899976232241---35579999---999987--998999726899397
Q ss_pred CCCCCCH
Q ss_conf 1122100
Q gi|254780787|r 534 DKLLDAI 540 (884)
Q Consensus 534 ~~~~~~~ 540 (884)
++++..+
T Consensus 154 ~e~F~~L 160 (209)
T PTZ00132 154 EKPFLWL 160 (209)
T ss_pred HHHHHHH
T ss_conf 9999999
No 177
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.14 E-value=2.4e-10 Score=88.75 Aligned_cols=146 Identities=21% Similarity=0.262 Sum_probs=97.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE-----EEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89862368504467778864222100123100012149-----9951784388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY-----QVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~-----~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
|+++|--..|||+|+..+.+..-...- ...||.+ .+......+.+.||+|++.|..|+..-..-+|.+|||
T Consensus 5 iv~lGd~~VGKTsli~r~~~~~f~~~y----~~Ti~~~~~k~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~a~~~ilv 80 (164)
T cd04145 5 LVVVGGGGVGKSALTIQFIQSYFVTDY----DPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCC----CCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCHHHHHHHCCCCCCEEE
T ss_conf 999999997889999999809898756----7841358999999999999999998988603125679873467874689
Q ss_pred EECCCCCCHHHHHHHH-HH-H---HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 9836674023577789-89-9---70994156123312443320002210000132000123474036311002477411
Q gi|254780787|r 461 LAADEEIMPQAIESIN-HA-K---AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDK 535 (884)
Q Consensus 461 v~~~~g~~~qt~e~~~-~~-~---~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (884)
.|+.+----+.+..|. .+ + ..++|+|++-||+|+.... .+..+... .+...+ +..++.+||+++.|+++
T Consensus 81 ydi~~~~Sf~~~~~~~~~i~~~~~~~~~piilVgNK~DL~~~r--~Vs~~e~~--~~a~~~--~~~~~E~SAk~~~nV~e 154 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQR--KVSREEGQ--ELARKL--KIPYIETSAKDRLNVDK 154 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHC--CCCHHHHH--HHHHHC--CCEEEEECCCCCCCHHH
T ss_conf 8567354399999999999986188777526530345735408--89999999--999981--99899985486827799
Q ss_pred CCCCHH
Q ss_conf 221000
Q gi|254780787|r 536 LLDAIL 541 (884)
Q Consensus 536 ~~~~~~ 541 (884)
+++.+.
T Consensus 155 ~F~~l~ 160 (164)
T cd04145 155 AFHDLV 160 (164)
T ss_pred HHHHHH
T ss_conf 999999
No 178
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.14 E-value=8e-10 Score=85.15 Aligned_cols=141 Identities=18% Similarity=0.266 Sum_probs=94.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCE--E--EEECC--CCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 8986236850446777886422210012310001214--9--99517--8438888516615789998666420680599
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGA--Y--QVAYQ--GKNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga--~--~~~~~--~~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
|+++|.-..|||+|+-++....-... -...||+ + .+..+ ...+.+.||+|++.|..|+..=..-+|.+||
T Consensus 3 ivlvGd~~VGKTsli~r~~~~~f~~~----~~~Tig~~~~~~~~~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~a~~~il 78 (166)
T cd00877 3 LVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAII 78 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999888999999983999998----68732556799999999979999999757871566687887400657998
Q ss_pred EEECCCCCCHHHHHHHHH----H--HHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 998366740235777898----9--9709941561233124433200022100001320001234740363110024774
Q gi|254780787|r 460 VLAADEEIMPQAIESINH----A--KAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNL 533 (884)
Q Consensus 460 vv~~~~g~~~qt~e~~~~----~--~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (884)
|.|+.+ ++|.+++.. + ..-++|+|++-||+|+.... +..+..+ .... .+..+..+||+++.|+
T Consensus 79 vyDvt~---~~Sf~~v~~w~~~i~~~~~~~piilVgNK~Dl~~~~---~~~~~~~---~~~~--~~~~~~EtSAk~~~nV 147 (166)
T cd00877 79 MFDVTS---RVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRK---VKAKQIT---FHRK--KNLQYYEISAKSNYNF 147 (166)
T ss_pred ECCCCC---HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC---CCHHHHH---HHHH--CCCEEEEECCCCCCCH
T ss_conf 437898---889999999999999868999899999862175036---6799999---9997--8998999845899098
Q ss_pred CCCCCCHH
Q ss_conf 11221000
Q gi|254780787|r 534 DKLLDAIL 541 (884)
Q Consensus 534 ~~~~~~~~ 541 (884)
++++..+.
T Consensus 148 ~e~F~~la 155 (166)
T cd00877 148 EKPFLWLA 155 (166)
T ss_pred HHHHHHHH
T ss_conf 99999999
No 179
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.13 E-value=3.2e-10 Score=87.88 Aligned_cols=150 Identities=21% Similarity=0.292 Sum_probs=95.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHH-CCCC-CCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 8986236850446777886422210-0123-1000121499951784388885166157899986664206805999983
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAK-GEIG-GITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~-~e~g-gitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
|+++|.-..|||+|+..+-+..-.. .... |+....-.+.+......+.|.||+|.+.|..++..-..-+|++|||.|+
T Consensus 3 ivvvGd~~VGKTsli~r~~~~~f~~~~~~Tig~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~l~~~~~~~a~~~ilvydi 82 (188)
T cd04125 3 VVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDV 82 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 99999999789999999951968998688654035799999999999999998999710457899986378679998038
Q ss_pred CCCCCHHHHHHH-HHHHH---CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 667402357778-98997---09941561233124433200022100001320001234740363110024774112210
Q gi|254780787|r 464 DEEIMPQAIESI-NHAKA---ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDA 539 (884)
Q Consensus 464 ~~g~~~qt~e~~-~~~~~---~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (884)
.+--.=+.+..| ..++. ...|+|++-||+|+.... .+..+... .+...+ +..++.+||++|.|++++++.
T Consensus 83 t~~~Sf~~l~~w~~~i~~~~~~~~~iilvgNK~DL~~~r--~V~~~e~~--~~a~~~--~~~~~E~SAktg~nV~e~F~~ 156 (188)
T cd04125 83 TDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNK--VVDSNIAK--SFCDSL--NIPFFETSAKQSINVEEAFIL 156 (188)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHCC--CCCHHHHH--HHHHHC--CCEEEEECCCCCCCHHHHHHH
T ss_conf 987899999999999998789866245100134476606--79999999--999986--998999747889098999999
Q ss_pred HH
Q ss_conf 00
Q gi|254780787|r 540 IL 541 (884)
Q Consensus 540 ~~ 541 (884)
+.
T Consensus 157 l~ 158 (188)
T cd04125 157 LV 158 (188)
T ss_pred HH
T ss_conf 99
No 180
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.12 E-value=3.8e-10 Score=87.39 Aligned_cols=143 Identities=23% Similarity=0.304 Sum_probs=97.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEE---EECC--CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 898623685044677788642221001231000121499---9517--84388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQ---VAYQ--GKNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~---~~~~--~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
|+++|.-..|||+|+-.+........ ....||.++ +..+ ...+.|.||.|++.|..||..-..-+|.+|||
T Consensus 2 ivviGd~gVGKTsli~r~~~~~F~~~----y~pTi~~~~~k~~~~~~~~~~l~iwDtaG~e~~~~l~~~~~r~a~~~ilV 77 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCLNHFVET----YDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILV 77 (190)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCCEEEEEEEEECCEEEEEEEEECCCCCCHHHHHHHHHCCCCEEEEE
T ss_conf 89999899878999999962979988----69972478899999999999999998999731167889982367658999
Q ss_pred EECCCCCCHHHHHHHHH----H---H---HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 98366740235777898----9---9---709941561233124433200022100001320001234740363110024
Q gi|254780787|r 461 LAADEEIMPQAIESINH----A---K---AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNN 530 (884)
Q Consensus 461 v~~~~g~~~qt~e~~~~----~---~---~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (884)
.|+++= +|.+++.. + + ..++|+|++-||+|+.... .+..+ +...+...+ +..++.+||+++
T Consensus 78 ydvtd~---~SF~~l~~w~~~i~~~~~~~~~~~piiLVGNK~Dl~~~r--~V~~~--e~~~~a~~~--~~~~~E~SAk~~ 148 (190)
T cd04144 78 YSITSR---STFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYER--EVSTE--EGAALARRL--GCEFIEASAKTN 148 (190)
T ss_pred EECCCH---HHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHCC--CCCHH--HHHHHHHHC--CCEEEEECCCCC
T ss_conf 727977---899999999999999853379995289514553503305--78999--999999980--998999735888
Q ss_pred CCCCCCCCCHH
Q ss_conf 77411221000
Q gi|254780787|r 531 LNLDKLLDAIL 541 (884)
Q Consensus 531 ~~~~~~~~~~~ 541 (884)
.|++++++.+.
T Consensus 149 ~nV~e~F~~l~ 159 (190)
T cd04144 149 VNVERAFYTLV 159 (190)
T ss_pred CCHHHHHHHHH
T ss_conf 09799999999
No 181
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.12 E-value=1.1e-09 Score=84.26 Aligned_cols=141 Identities=27% Similarity=0.377 Sum_probs=103.7
Q ss_pred CCCC-CEEEEEECCCCCHHHHHHHHHHHH--HHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHH-------HHHHHHH
Q ss_conf 2553-038986236850446777886422--21001231000121499951784388885166157-------8999866
Q gi|254780787|r 380 DIRP-PVVTIMGHVDHGKTSLLDAIRKAD--VAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAA-------FYEMRAR 449 (884)
Q Consensus 380 ~~R~-pvv~v~ghvd~GKt~lld~~r~~~--~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~-------f~~~r~r 449 (884)
..|. .-|+|+|-.+.||+|||-+|-+.+ ++...+ |-|-.+=-..+.+.+..++|+||-|--. ----|++
T Consensus 212 ~l~~G~~v~i~G~PN~GKSSL~N~L~~~drAIVS~ip-GTTRD~ie~~l~l~G~~v~l~DTAGiR~t~d~IE~~GI~ra~ 290 (445)
T PRK05291 212 LLREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIA-GTTRDVIEEHINLDGIPLRLIDTAGIRETEDEVEKIGIERSR 290 (445)
T ss_pred HHHCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCC-CCCCCEEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 8635986998899987689999998578746731899-974040223689999899999899766557458899999999
Q ss_pred -HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEC
Q ss_conf -6420680599998366740235777898997099415612331244332000221000013200012347403631100
Q gi|254780787|r 450 -GARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAK 528 (884)
Q Consensus 450 -g~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (884)
-+.-+|++|+|+|+..+....-.+.+..+ .+.|+|+++||+|+..... .....+.+|++
T Consensus 291 ~~~~~ADlil~v~D~s~~~~~~~~~~~~~~--~~~~~i~V~NK~DL~~~~~------------------~~~~~i~iSak 350 (445)
T PRK05291 291 KAIEEADLVLLVLDASEPLTEEDKEILEEF--KNKPVIVVLNKADLTGEKI------------------DGLPVIRISAK 350 (445)
T ss_pred HHHHHCCEEEEEEECCCCCCCCHHHHHHHC--CCCCEEEEEEHHHCCCCCC------------------CCCCEEEEECC
T ss_conf 999839999999879988872259999851--7998799985120466534------------------78975999837
Q ss_pred CCCCCCCCCCCHH
Q ss_conf 2477411221000
Q gi|254780787|r 529 NNLNLDKLLDAIL 541 (884)
Q Consensus 529 ~~~~~~~~~~~~~ 541 (884)
+|.|++.|++.+.
T Consensus 351 ~g~Gi~~L~~~i~ 363 (445)
T PRK05291 351 TGEGIDELEEALK 363 (445)
T ss_pred CCCCHHHHHHHHH
T ss_conf 8869999999999
No 182
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.11 E-value=8.2e-10 Score=85.10 Aligned_cols=143 Identities=22% Similarity=0.283 Sum_probs=94.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE----EEEC------------CCCEEEEEECCCHHHHHHHHHH
Q ss_conf 89862368504467778864222100123100012149----9951------------7843888851661578999866
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY----QVAY------------QGKNITFLDTPGHAAFYEMRAR 449 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~----~~~~------------~~~~~~~iDtPGh~~f~~~r~r 449 (884)
|+++|.-..|||+|+-.+.+..-... -...||.- .+.. ....+.|.||+|++.|..|+..
T Consensus 7 ivvvGd~~VGKTsli~r~~~~~f~~~----y~~Tig~~~~~k~i~~~~~~~~~~~~~~~~v~l~iwDtaGqe~~~~l~~~ 82 (180)
T cd04127 7 FLALGDSGVGKTSFLYQYTDNKFNPK----FITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC----CCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHH
T ss_conf 99999999888999999961958998----68843226889999984765544457885899999989886304788899
Q ss_pred HHHCCCCEEEEEECCCCCCHHHHHHHH----HHHH----CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCE
Q ss_conf 642068059999836674023577789----8997----09941561233124433200022100001320001234740
Q gi|254780787|r 450 GARVTDIAVLVLAADEEIMPQAIESIN----HAKA----ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDIL 521 (884)
Q Consensus 450 g~~~~d~~ilvv~~~~g~~~qt~e~~~----~~~~----~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (884)
-..-+|.+|||.|+.+- ++.+.+. .++. .+.|+|++-||+|+.... .+..+... .+...+ +..
T Consensus 83 ~~~~a~~~ilvydit~~---~Sf~~l~~w~~~i~~~~~~~~~~iilVGNK~DL~~~r--~V~~~e~~--~~a~~~--~~~ 153 (180)
T cd04127 83 FFRDAMGFLLIFDLTNE---QSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQR--QVSEEQAK--ALADKY--GIP 153 (180)
T ss_pred HHHHHCEEEEEEECCCH---HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHCC--CCCHHHHH--HHHHHC--CCE
T ss_conf 98754365899968988---9999899999999985466898578750323667508--88999999--999984--997
Q ss_pred EEEEEECCCCCCCCCCCCHH
Q ss_conf 36311002477411221000
Q gi|254780787|r 522 DVEISAKNNLNLDKLLDAIL 541 (884)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~ 541 (884)
++.+||++|.|++++++.+.
T Consensus 154 ~~E~SAk~g~nV~e~F~~l~ 173 (180)
T cd04127 154 YFETSAATGTNVEKAVERLL 173 (180)
T ss_pred EEEECCCCCCCHHHHHHHHH
T ss_conf 99980377919899999999
No 183
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.11 E-value=2.3e-10 Score=88.83 Aligned_cols=146 Identities=21% Similarity=0.236 Sum_probs=95.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE----EEECC--CCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 89862368504467778864222100123100012149----99517--8438888516615789998666420680599
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY----QVAYQ--GKNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~----~~~~~--~~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
|+++|.-..|||+|+-.+....-.... -.| ||.- .+..+ ...+.+.||+|++.|..++..-..-+|++||
T Consensus 7 ivlvGd~~VGKTsli~r~~~~~f~~~~--~~T--ig~~~~~k~i~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~a~~~il 82 (168)
T cd01866 7 YIIIGDTGVGKSCLLLQFTDKRFQPVH--DLT--IGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCC--CCC--CEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHHHHHHHCEEEE
T ss_conf 999998997889999999109899987--898--5078899999999999999999799973346255888664368999
Q ss_pred EEECCCCCCHHHHHHH-HHHHH---CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 9983667402357778-98997---0994156123312443320002210000132000123474036311002477411
Q gi|254780787|r 460 VLAADEEIMPQAIESI-NHAKA---ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDK 535 (884)
Q Consensus 460 vv~~~~g~~~qt~e~~-~~~~~---~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (884)
|.|+.+----+.+..| ..++. .++|+|++-||+|+.... .+..+..+. +...+ +..++.+||+++.|+++
T Consensus 83 vydit~~~Sf~~l~~w~~~i~~~~~~~~~iiLVGNK~DL~~~r--~V~~~e~~~--~a~~~--~~~~~E~SAk~~~nV~~ 156 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRR--EVSYEEGEA--FAKEH--GLIFMETSAKTASNVEE 156 (168)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCC--CCCHHHHHH--HHHHC--CCEEEEECCCCCCCHHH
T ss_conf 3445877999999999999998679996599843423545407--789999999--99986--99999976788808899
Q ss_pred CCCCHH
Q ss_conf 221000
Q gi|254780787|r 536 LLDAIL 541 (884)
Q Consensus 536 ~~~~~~ 541 (884)
++..+.
T Consensus 157 ~F~~l~ 162 (168)
T cd01866 157 AFINTA 162 (168)
T ss_pred HHHHHH
T ss_conf 999999
No 184
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.10 E-value=3.1e-10 Score=88.02 Aligned_cols=146 Identities=19% Similarity=0.227 Sum_probs=95.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHH-HHHCCCCCCEECCCE-E---EEECC-C--CEEEEEECCCHHHHHHHHHHHHHCCCCE
Q ss_conf 8986236850446777886422-210012310001214-9---99517-8--4388885166157899986664206805
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKAD-VAKGEIGGITQHIGA-Y---QVAYQ-G--KNITFLDTPGHAAFYEMRARGARVTDIA 457 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~-~~~~e~ggitq~iga-~---~~~~~-~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~ 457 (884)
|.++|--..|||+|+-++-... ..... -| ||+ | .+..+ + ..+.|.||+|++.|..|+..=-.-+|++
T Consensus 3 vvllGd~gVGKTsLi~rf~~~~F~~~y~---~T--ig~df~~k~i~~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~a~~~ 77 (201)
T cd04107 3 VLVIGDLGVGKTSIIKRYVHGIFSQHYK---AT--IGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGA 77 (201)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCC---CC--CCEEEEEEEEEECCCEEEEEEEEECCCCCCCCCCHHHHCCCCCEE
T ss_conf 9999999978999999998299999888---87--567789989996798199999986899832220037555577647
Q ss_pred EEEEECCCCCCHHHHHHHHH-H-------HHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 99998366740235777898-9-------970994156123312443320002210000132000123474036311002
Q gi|254780787|r 458 VLVLAADEEIMPQAIESINH-A-------KAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKN 529 (884)
Q Consensus 458 ilvv~~~~g~~~qt~e~~~~-~-------~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (884)
|||.|+.+----+.+..|.- + ....+|+|++-||+|+...+. +..+... .+...++ ...++.+||++
T Consensus 78 ilvydvt~~~Sf~~l~~w~~~i~~~~~~~~~~~ipiilVgNK~DL~~~~~--v~~ee~~--~~a~~~~-~~~~~EtSAkt 152 (201)
T cd04107 78 IIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLA--KDGEQMD--QFCKENG-FIGWFETSAKE 152 (201)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC--CCHHHHH--HHHHHCC-CCEEEEECCCC
T ss_conf 99982798899998999999999986213789871899866556411256--8999999--9999779-98099977999
Q ss_pred CCCCCCCCCCHH
Q ss_conf 477411221000
Q gi|254780787|r 530 NLNLDKLLDAIL 541 (884)
Q Consensus 530 ~~~~~~~~~~~~ 541 (884)
|.|++++++.+.
T Consensus 153 g~nV~e~F~~l~ 164 (201)
T cd04107 153 GINIEEAMRFLV 164 (201)
T ss_pred CCCHHHHHHHHH
T ss_conf 949899999999
No 185
>KOG0052 consensus
Probab=99.10 E-value=1.9e-11 Score=96.32 Aligned_cols=112 Identities=32% Similarity=0.408 Sum_probs=87.9
Q ss_pred CEEEEEECCCCCHHHHHHH----HHH--H-----------------------HHHHCCCCCCEECCCEEEEECCCCEEEE
Q ss_conf 0389862368504467778----864--2-----------------------2210012310001214999517843888
Q gi|254780787|r 384 PVVTIMGHVDHGKTSLLDA----IRK--A-----------------------DVAKGEIGGITQHIGAYQVAYQGKNITF 434 (884)
Q Consensus 384 pvv~v~ghvd~GKt~lld~----~r~--~-----------------------~~~~~e~ggitq~iga~~~~~~~~~~~~ 434 (884)
+-++++||||.||+|+--+ |-+ . +-+..|- |||..|....+.....-+++
T Consensus 8 ~ni~~i~h~~s~~stt~~~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r-~i~I~~~l~~~~t~k~~i~i 86 (391)
T KOG0052 8 INIVVIGHVDSGKSTTTGYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERER-GITIDIALWKFETSKYYVTI 86 (391)
T ss_pred CCEEEEEEEEEEEEEEEEEECCCCCCHHHHHHCHHHHHHCCCEEEEEEEECHHHHCCCC-CEEEEEEEECCCCEEEEEEE
T ss_conf 02589876322126898630366453013330667776356416655431111211146-54899985043310677998
Q ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEEECCCC-------CCHHHHHHHHHHHHCCCC-EEEECCCCCCCC
Q ss_conf 85166157899986664206805999983667-------402357778989970994-156123312443
Q gi|254780787|r 435 LDTPGHAAFYEMRARGARVTDIAVLVLAADEE-------IMPQAIESINHAKAADVS-IIVAINKIDKLG 496 (884)
Q Consensus 435 iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g-------~~~qt~e~~~~~~~~~~p-~iva~nk~d~~~ 496 (884)
||.|||-.|...+..|.+.+|-|+|.|++--| .-.||.|++.|+-.+++. .||.+||+|-..
T Consensus 87 id~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~ 156 (391)
T KOG0052 87 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 156 (391)
T ss_pred ECCCCCCCEEEEEEEEEEEECCEEEEEEEECCCEEEECCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCC
T ss_conf 5377887421468766876230589997503533552033511445655531035314567760343368
No 186
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.09 E-value=7e-10 Score=85.56 Aligned_cols=148 Identities=20% Similarity=0.266 Sum_probs=97.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE----EEECC--CCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 89862368504467778864222100123100012149----99517--8438888516615789998666420680599
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY----QVAYQ--GKNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~----~~~~~--~~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
|+++|.-..|||+|+-.+....-.... ..-.||.. .+..+ ...+.|.||+|.+.|..|+..-..-+|.+||
T Consensus 3 ivlvGd~~VGKTsLi~r~~~~~f~~~~---y~~tig~~~~~k~i~v~~~~v~l~iwDtaG~e~~~~l~~~y~~~a~~~il 79 (193)
T cd04118 3 VVMLGKESVGKTSLVERYVHHRFLVGP---YQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIV 79 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCC---CCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 999996998799999999859799899---78763058899999999999999999199973123557988347744578
Q ss_pred EEECCCCCCHHHHHHHHH----HH--HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 998366740235777898----99--709941561233124433200022100001320001234740363110024774
Q gi|254780787|r 460 VLAADEEIMPQAIESINH----AK--AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNL 533 (884)
Q Consensus 460 vv~~~~g~~~qt~e~~~~----~~--~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (884)
|.|+.+ ++|.+.+.. ++ .-++|+|++-||+|+.........-...+...+..+++ ..++.+||++|.|+
T Consensus 80 vydit~---~~Sf~~i~~W~~~i~~~~~~~~iilVGnK~DL~~~~~~~r~V~~~e~~~~a~~~~--~~~~E~SAktg~nV 154 (193)
T cd04118 80 CYDLTD---SSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK--AQHFETSSKTGQNV 154 (193)
T ss_pred EECCCC---HHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCCCCCCCCCHHHHHHHHHHCC--CEEEEECCCCCCCH
T ss_conf 830698---7999989999999997489999799977466322016664468999999999809--96999838989398
Q ss_pred CCCCCCHH
Q ss_conf 11221000
Q gi|254780787|r 534 DKLLDAIL 541 (884)
Q Consensus 534 ~~~~~~~~ 541 (884)
+++++.+.
T Consensus 155 ~e~F~~la 162 (193)
T cd04118 155 DELFQKVA 162 (193)
T ss_pred HHHHHHHH
T ss_conf 99999999
No 187
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.09 E-value=5.4e-10 Score=86.31 Aligned_cols=146 Identities=19% Similarity=0.205 Sum_probs=96.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEE---EECC--CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 898623685044677788642221001231000121499---9517--84388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQ---VAYQ--GKNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~---~~~~--~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
|+++|.-..|||+|+-.+.+..-...- ...||.++ +..+ ...+.+.||+|++.|..|+.--..-+|.+|||
T Consensus 4 IvllGd~~VGKTsli~r~~~~~f~~~y----~pTi~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~l~~~y~~~a~~~ilv 79 (164)
T cd04175 4 LVVLGSGGVGKSALTVQFVQGIFVEKY----DPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCC----CCCEEEEEEEEEEECCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 999899997599999999709288656----8840468999999999999998514775432456788873578689999
Q ss_pred EECCCCCCHHHHHHHH-HH-H---HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 9836674023577789-89-9---70994156123312443320002210000132000123474036311002477411
Q gi|254780787|r 461 LAADEEIMPQAIESIN-HA-K---AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDK 535 (884)
Q Consensus 461 v~~~~g~~~qt~e~~~-~~-~---~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (884)
.|+++---=+.++.|. .+ + ..++|+|++-||+|+.... .+..+..+ .+...+ +..++.+||++|.|+++
T Consensus 80 ydvt~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~DL~~~r--~V~~~~~~--~~a~~~--~~~~~E~SAk~~~nV~~ 153 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER--VVGKEQGQ--NLARQW--GCAFLETSAKAKINVNE 153 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHCC--CCCHHHHH--HHHHHC--CCEEEEECCCCCCCHHH
T ss_conf 6078777899999999999986289996399852145722206--89999999--999985--99999966898817899
Q ss_pred CCCCHH
Q ss_conf 221000
Q gi|254780787|r 536 LLDAIL 541 (884)
Q Consensus 536 ~~~~~~ 541 (884)
++..+.
T Consensus 154 ~F~~l~ 159 (164)
T cd04175 154 IFYDLV 159 (164)
T ss_pred HHHHHH
T ss_conf 999999
No 188
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.09 E-value=7.1e-10 Score=85.52 Aligned_cols=149 Identities=17% Similarity=0.230 Sum_probs=94.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEE---EECC--CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 898623685044677788642221001231000121499---9517--84388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQ---VAYQ--GKNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~---~~~~--~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
|.++|--..|||+|+-.+-+......- ...|+.++ +..+ ...+.+.||+|++.|..+|..--.-+|++|||
T Consensus 4 ivlvGd~~VGKTsli~r~~~~~f~~~~----~~Ti~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~~~~~~~~~a~~~ilv 79 (174)
T cd01871 4 CVVVGDGAVGKTCLLISYTTNAFPGEY----IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 79 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCC----CCEEEEEEEEEEEECCEEEEEEEECCCCCCCCHHHHHHHHHHCCEEEEE
T ss_conf 999899998699999999739999986----8837887679999999999999986999724067889987406689999
Q ss_pred EECCCCCCHHHHHHHH-----HHH--HCCCCEEEECCCCCCCCCCCCHHHHH------H-HCCCCCCCCCCCCCEEEEEE
Q ss_conf 9836674023577789-----899--70994156123312443320002210------0-00132000123474036311
Q gi|254780787|r 461 LAADEEIMPQAIESIN-----HAK--AADVSIIVAINKIDKLGADPQKVRMS------L-LKHDVFVESMGGDILDVEIS 526 (884)
Q Consensus 461 v~~~~g~~~qt~e~~~-----~~~--~~~~p~iva~nk~d~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~ 526 (884)
.|+.+- +|-+++. .++ .-++|+|++-||+|+........... + .+.+.......+...++.+|
T Consensus 80 ydi~~~---~SF~~i~~~w~~~i~~~~~~~piiLVGnK~DL~~~~~~~~~~~~~~~~~vs~~eg~~~a~~~~~~~f~EtS 156 (174)
T cd01871 80 FSLVSP---ASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 156 (174)
T ss_pred EECCCH---HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECC
T ss_conf 867987---88999999999999985889997987473013100456778865146775899999999875997899918
Q ss_pred ECCCCCCCCCCCCHH
Q ss_conf 002477411221000
Q gi|254780787|r 527 AKNNLNLDKLLDAIL 541 (884)
Q Consensus 527 ~~~~~~~~~~~~~~~ 541 (884)
|+++.|++++++.+.
T Consensus 157 Ak~~~nV~e~F~~li 171 (174)
T cd01871 157 ALTQKGLKTVFDEAI 171 (174)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 788959799999999
No 189
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.08 E-value=3.8e-10 Score=87.39 Aligned_cols=145 Identities=17% Similarity=0.222 Sum_probs=96.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHH-HHCCCCCCEECCCEE---E--EECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 89862368504467778864222-100123100012149---9--95178438888516615789998666420680599
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADV-AKGEIGGITQHIGAY---Q--VAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~-~~~e~ggitq~iga~---~--~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
|+++|.-..|||+|+-.+-+... ..... | ||.. . +......+.+.||.|++.|..|+..-..-+|.+||
T Consensus 5 iv~lGd~~VGKTsli~r~~~~~f~~~~~p---T--i~~~~~~~i~i~~~~~~l~iwDtaGqe~~~~l~~~~~r~a~~~il 79 (172)
T cd04141 5 IVMLGAGGVGKSAVTMQFISHSFPDYHDP---T--IEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFII 79 (172)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCC---C--CCCCEEEEEEECCEEEEEEEEECCCCCCCCCCHHHHHCCCCEEEE
T ss_conf 99999999779999999970989987588---4--222036999999999999999788851357451556427865688
Q ss_pred EEECCCCCCHHHHHHH----HHHH-HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 9983667402357778----9899-7099415612331244332000221000013200012347403631100247741
Q gi|254780787|r 460 VLAADEEIMPQAIESI----NHAK-AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLD 534 (884)
Q Consensus 460 vv~~~~g~~~qt~e~~----~~~~-~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (884)
|.|+.+=--=+.+..| ...+ ..++|+|++-||+|+... ..+..+.. ..+...+ +..+..+||+++.|++
T Consensus 80 vydvt~~~Sf~~~~~w~~~i~~~~~~~~~piilvGNK~DL~~~--r~Vs~~e~--~~~a~~~--~~~f~EtSAk~~~nV~ 153 (172)
T cd04141 80 CYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQ--RQVTTEEG--RNLAREF--NCPFFETSAALRHYID 153 (172)
T ss_pred EECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHH--CCCCHHHH--HHHHHHC--CCEEEEECCCCCCCHH
T ss_conf 7316888899999999999999728899868998504566761--88899999--9999985--9979997478882889
Q ss_pred CCCCCHH
Q ss_conf 1221000
Q gi|254780787|r 535 KLLDAIL 541 (884)
Q Consensus 535 ~~~~~~~ 541 (884)
+++..+.
T Consensus 154 e~F~~l~ 160 (172)
T cd04141 154 DAFHGLV 160 (172)
T ss_pred HHHHHHH
T ss_conf 9999999
No 190
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.07 E-value=6.5e-10 Score=85.76 Aligned_cols=148 Identities=16% Similarity=0.169 Sum_probs=95.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCE------EEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 8986236850446777886422210012310001214------9995178438888516615789998666420680599
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGA------YQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga------~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
|+++|.-..|||+|+-++.+...... ....||+ +.+......+.+.||+|++.|..|+..=..-+|++||
T Consensus 3 ivlvGd~~VGKTsli~r~~~~~f~~~----y~~Tig~d~~~k~~~v~~~~~~l~iwDtaGqe~f~~l~~~y~r~a~~~il 78 (170)
T cd04108 3 VIVVGDLSVGKTCLINRFCKDVFDKN----YKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIII 78 (170)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHHHHCCCCEEEE
T ss_conf 99999899898999999963988997----25634505899999999999999999899997466443777327875899
Q ss_pred EEECCCCCCHHHHHHHH--HHHHC---CCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 99836674023577789--89970---99415612331244332000221000013200012347403631100247741
Q gi|254780787|r 460 VLAADEEIMPQAIESIN--HAKAA---DVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLD 534 (884)
Q Consensus 460 vv~~~~g~~~qt~e~~~--~~~~~---~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (884)
|.|+.+----+.+..|. +++.. .+|++++-||+|+.......+... +.......+ ...+..+||++|+|++
T Consensus 79 vyDvt~~~Sf~~~~~w~~~~~~~~~~~~~~i~LvgNK~DL~~~~~~~~~~~--~~~~~a~~~--~~~~~E~SAk~g~nV~ 154 (170)
T cd04108 79 VFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQ--DAIKLAAEM--QAEYWSVSALSGENVR 154 (170)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEHH--HHHHHHHHC--CCEEEEECCCCCCCHH
T ss_conf 997898789999999999999850899982999998413798755764489--999999877--9879998557881879
Q ss_pred CCCCCHH
Q ss_conf 1221000
Q gi|254780787|r 535 KLLDAIL 541 (884)
Q Consensus 535 ~~~~~~~ 541 (884)
++++.+.
T Consensus 155 e~F~~ia 161 (170)
T cd04108 155 EFFFRVA 161 (170)
T ss_pred HHHHHHH
T ss_conf 9999999
No 191
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.07 E-value=9.2e-10 Score=84.74 Aligned_cols=148 Identities=23% Similarity=0.320 Sum_probs=96.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEE--ECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 8986236850446777886422210012310001214999--51784388885166157899986664206805999983
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQV--AYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~--~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
|+++|.--.|||+|+-..-.-.-... ...||+-++ ......+.+.||.|++.|..|+.-=-.-+|.+|||.|+
T Consensus 3 ivllGd~~VGKTsl~~rf~~~~F~~~-----~~Tig~~~~~k~~~~~~l~IwDTaGqE~f~sl~~~y~r~a~~~ilvyDi 77 (220)
T cd04126 3 VVLLGDMNVGKTSLLHRYMERRFKDT-----VSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDV 77 (220)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC-----CCCCCEEEEEEECCEEEEEEEECCCCCCCCCCHHHHHCCCCEEEEEEEC
T ss_conf 99999999889999999972989998-----8871368999876478899994798622433268885679889999979
Q ss_pred CCCCCHHHHHHHHH-------HHHCCCCEEEECCCCCCCCCCC-----------------CHHHHH----HHCCCC----
Q ss_conf 66740235777898-------9970994156123312443320-----------------002210----000132----
Q gi|254780787|r 464 DEEIMPQAIESINH-------AKAADVSIIVAINKIDKLGADP-----------------QKVRMS----LLKHDV---- 511 (884)
Q Consensus 464 ~~g~~~qt~e~~~~-------~~~~~~p~iva~nk~d~~~~~~-----------------~~~~~~----~~~~~~---- 511 (884)
.+ ++|.++|.. ....++|+|++-||+|+..... ..+..+ +.....
T Consensus 78 t~---~~Sf~~l~~~~~~~~~~~~~~~~~ilVGNK~DL~~~~~~~~~~~~~~~~~~~~~~r~Vs~ee~~~~a~~~~~~~~ 154 (220)
T cd04126 78 SN---VQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKM 154 (220)
T ss_pred CC---HHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 89---899999999999999847999808999887121364344333333322344100354489999999998502202
Q ss_pred CC--CCCCCCCEEEEEEECCCCCCCCCCCCHH
Q ss_conf 00--0123474036311002477411221000
Q gi|254780787|r 512 FV--ESMGGDILDVEISAKNNLNLDKLLDAIL 541 (884)
Q Consensus 512 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (884)
.. .......+++.+||++|.|++++++.+.
T Consensus 155 ~~~~~~~~~~~~~fEtSAKtg~nV~e~F~~i~ 186 (220)
T cd04126 155 LDEDLSPAAEKMCFETSAKTGYNVDELFEYLF 186 (220)
T ss_pred CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 22111124577699914789979899999999
No 192
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.06 E-value=6.1e-10 Score=85.96 Aligned_cols=147 Identities=22% Similarity=0.290 Sum_probs=97.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCC--CCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 89862368504467778864222100123--1000121499951784388885166157899986664206805999983
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIG--GITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~g--gitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
|+++|--..|||+|+-++..........- |+.-+.-...+......+.|.||+|++.|..|+..-..-+|++|||.|+
T Consensus 9 IvlvGd~~VGKTSli~r~~~~~F~~~~~~Tig~d~~~k~v~i~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilvyDi 88 (199)
T cd04110 9 LLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDV 88 (199)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHHHHHCCCCCEEEEEC
T ss_conf 99999799888999999950999998689755587899999999999999998999812353526664246542389717
Q ss_pred CCCCCHHHHHHHHH----HH--HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 66740235777898----99--7099415612331244332000221000013200012347403631100247741122
Q gi|254780787|r 464 DEEIMPQAIESINH----AK--AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLL 537 (884)
Q Consensus 464 ~~g~~~qt~e~~~~----~~--~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (884)
.+ +.|.+++.. ++ ...+|+|++-||+|...... +..+... .+...+ +..++.+||++|.|+++++
T Consensus 89 t~---~~Sf~~l~~w~~~i~~~~~~~~~ilVGNK~Dl~~~r~--v~~~e~~--~~a~~~--~~~f~E~SAktg~nV~e~F 159 (199)
T cd04110 89 TN---GESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKV--VETEDAY--KFAGQM--GISLFETSAKENINVEEMF 159 (199)
T ss_pred CC---HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHCC--CCHHHHH--HHHHHC--CCEEEEEECCCCCCHHHHH
T ss_conf 98---8999999999999997599875799988554475469--9999999--999986--9979998689992989999
Q ss_pred CCHH
Q ss_conf 1000
Q gi|254780787|r 538 DAIL 541 (884)
Q Consensus 538 ~~~~ 541 (884)
+.+.
T Consensus 160 ~~i~ 163 (199)
T cd04110 160 NCIT 163 (199)
T ss_pred HHHH
T ss_conf 9999
No 193
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.06 E-value=7.5e-10 Score=85.34 Aligned_cols=154 Identities=21% Similarity=0.312 Sum_probs=101.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE-----EEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89862368504467778864222100123100012149-----9951784388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY-----QVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~-----~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
|.|||.-..|||+|+-.+....-... -+..|+.| .+......+.+.||.|.+.|..|+.---.-+|++|||
T Consensus 3 IvvlGdsgVGKTSLi~Rf~~~~F~~~----y~pTi~d~~~k~i~i~g~~v~L~IwDTaGqe~f~sl~~~y~~~a~~~IlV 78 (247)
T cd04143 3 MVVLGASKVGKTAIVSRFLGGRFEEQ----YTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILV 78 (247)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC----CCCCHHHEEEEEEEECCEEEEEEEEECCCCCCCCCCHHHHHHCCCEEEEE
T ss_conf 99999899789999999964968998----78883531889999999999999996766536874420131217789999
Q ss_pred EECCCCCCHHHHHHH----HHHH---------HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEE
Q ss_conf 983667402357778----9899---------709941561233124433200022100001320001234740363110
Q gi|254780787|r 461 LAADEEIMPQAIESI----NHAK---------AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISA 527 (884)
Q Consensus 461 v~~~~g~~~qt~e~~----~~~~---------~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (884)
.|+.+---=+.++.| ...+ ..++|+|++-||+|+.. ...+..+-.... ....+ +..++.+||
T Consensus 79 YDITnr~SFe~v~~w~~~I~e~k~~~~~~~~~~~~vpiiLVGNK~DL~~--~R~Vs~eEa~~~-~A~~~--~~~f~EtSA 153 (247)
T cd04143 79 FSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF--PREVQRDEVEQL-VGGDE--NCAYFEVSA 153 (247)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHH--CCCCCHHHHHHH-HHHHC--CCEEEECCC
T ss_conf 9799878999899999999986400100135788875899866554320--178799999999-99768--987998878
Q ss_pred CCCCCCCCCCCCHHCCCCCCC
Q ss_conf 024774112210000233334
Q gi|254780787|r 528 KNNLNLDKLLDAILLQAEMLD 548 (884)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~ 548 (884)
+++.|+++++..++..+.+..
T Consensus 154 Kt~~NV~E~F~~L~~~~~l~~ 174 (247)
T cd04143 154 KKNSNLDEMFRALFSLAKLPN 174 (247)
T ss_pred CCCCCHHHHHHHHHHHCCCCC
T ss_conf 999498999999998549986
No 194
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.06 E-value=9e-10 Score=84.82 Aligned_cols=147 Identities=17% Similarity=0.217 Sum_probs=95.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCC--CCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 8986236850446777886422210012--31000121499951784388885166157899986664206805999983
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEI--GGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~--ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
|.++|--..|||+|+-.+.......... -|+..+.--+.+......+.+.||+|++.|..|+..=..-+|.+|||.|+
T Consensus 9 ivllGd~~VGKTsl~~r~~~~~f~~~y~~Tig~~~~~k~~~~~~~~v~l~iwDtaGqe~f~~l~~~y~r~a~~~ilvyDv 88 (189)
T cd04121 9 FLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDI 88 (189)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECC
T ss_conf 99999899789999999974997898687653798999999999999999981788622116789886633704898227
Q ss_pred CCCCCHHHHHHHH----HHH--HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 6674023577789----899--7099415612331244332000221000013200012347403631100247741122
Q gi|254780787|r 464 DEEIMPQAIESIN----HAK--AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLL 537 (884)
Q Consensus 464 ~~g~~~qt~e~~~----~~~--~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (884)
.+ ++|.+++. .++ .-++|+|++-||+|+.... .+..+. ...+...+ +..++.+||++|.|+++++
T Consensus 89 t~---~~Sf~~l~~w~~~i~~~~~~~p~iLVGNK~DL~~~r--~V~~ee--~~~~A~~~--~~~f~EtSAk~g~nV~e~F 159 (189)
T cd04121 89 TN---RWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKR--QVATEQ--AQAYAERN--GMTFFEVSPLCNFNITESF 159 (189)
T ss_pred CC---HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCC--CCCHHH--HHHHHHHC--CCEEEEECCCCCCCHHHHH
T ss_conf 98---899999999999999976898789961325503308--899999--99999988--9999996006793989999
Q ss_pred CCHH
Q ss_conf 1000
Q gi|254780787|r 538 DAIL 541 (884)
Q Consensus 538 ~~~~ 541 (884)
..+.
T Consensus 160 ~~l~ 163 (189)
T cd04121 160 TELA 163 (189)
T ss_pred HHHH
T ss_conf 9999
No 195
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.06 E-value=4e-10 Score=87.21 Aligned_cols=143 Identities=20% Similarity=0.247 Sum_probs=96.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE----EEECC--CCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 89862368504467778864222100123100012149----99517--8438888516615789998666420680599
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY----QVAYQ--GKNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~----~~~~~--~~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
|+++|.-..|||+|+-++..-.-... ....||.. .+..+ ...+.+.||+|++.|..|+..=..-+|++||
T Consensus 5 ivlvGd~~VGKTsli~r~~~~~f~~~----~~~Tig~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~a~~~il 80 (166)
T cd04122 5 YIIIGDMGVGKSCLLHQFTEKKFMAD----CPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 80 (166)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCHHHEECCCEEEE
T ss_conf 99999999579999999912988999----99974468899999999999999999899985444252111431546599
Q ss_pred EEECCCCCCHHHHHHHH----HHHH---CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 99836674023577789----8997---0994156123312443320002210000132000123474036311002477
Q gi|254780787|r 460 VLAADEEIMPQAIESIN----HAKA---ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLN 532 (884)
Q Consensus 460 vv~~~~g~~~qt~e~~~----~~~~---~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (884)
|.|+.+ +++.+.+. .++. .++|+|++-||+|+..... +..+... .+...+ +..+..+||++|.|
T Consensus 81 vydvt~---~~Sf~~l~~w~~~~~~~~~~~~~iilVGNK~DL~~~r~--V~~~e~~--~~a~~~--~~~~~E~SAk~g~n 151 (166)
T cd04122 81 VYDITR---RSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRD--VTYEEAK--QFADEN--GLLFLECSAKTGEN 151 (166)
T ss_pred EECCCC---HHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHCCC--CCHHHHH--HHHHHC--CCEEEEECCCCCCC
T ss_conf 725874---76799999999999985699975870340157444389--9999999--999986--99899986587808
Q ss_pred CCCCCCCHH
Q ss_conf 411221000
Q gi|254780787|r 533 LDKLLDAIL 541 (884)
Q Consensus 533 ~~~~~~~~~ 541 (884)
+++++..+.
T Consensus 152 V~e~F~~l~ 160 (166)
T cd04122 152 VEDAFLETA 160 (166)
T ss_pred HHHHHHHHH
T ss_conf 899999999
No 196
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.06 E-value=9.1e-09 Score=77.93 Aligned_cols=156 Identities=26% Similarity=0.309 Sum_probs=116.3
Q ss_pred CCCCCCCCCE-EEEEECCCCCHHHHHHHHHHHHHH--HCCCCCCEECCCEEEEECCCCEEEEEECCCHH-------HHHH
Q ss_conf 1001255303-898623685044677788642221--00123100012149995178438888516615-------7899
Q gi|254780787|r 376 ESDLDIRPPV-VTIMGHVDHGKTSLLDAIRKADVA--KGEIGGITQHIGAYQVAYQGKNITFLDTPGHA-------AFYE 445 (884)
Q Consensus 376 ~~~~~~R~pv-v~v~ghvd~GKt~lld~~r~~~~~--~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~-------~f~~ 445 (884)
.....+|-++ +.|.|--+.||+|||-+|-+.+.+ .--+ |-|-.+=--++...+.++.++||-|-- .---
T Consensus 209 ~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~-GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGI 287 (454)
T COG0486 209 KQGKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIA-GTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGI 287 (454)
T ss_pred HHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCC-CCCCCEEEEEEEECCEEEEEEECCCCCCCCCHHHHHHH
T ss_conf 42136645864999879988679999988667866742899-97410378999989889999856776667348999999
Q ss_pred HHHHH-HHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEE
Q ss_conf 98666-42068059999836674023577789899709941561233124433200022100001320001234740363
Q gi|254780787|r 446 MRARG-ARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVE 524 (884)
Q Consensus 446 ~r~rg-~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (884)
.|++. +.-+|++++|+|+.+++..+-.+.+. +...+.|+|+++||+|+...+... .. .+......+.
T Consensus 288 eRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~-------~~----~~~~~~~~i~ 355 (454)
T COG0486 288 ERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELE-------SE----KLANGDAIIS 355 (454)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH-HCCCCCCEEEEEECHHCCCCCCCC-------HH----HCCCCCCEEE
T ss_conf 99999998599899997088777601177887-243689779999602115643210-------12----0267882699
Q ss_pred EEECCCCCCCCCCCCHHCCC
Q ss_conf 11002477411221000023
Q gi|254780787|r 525 ISAKNNLNLDKLLDAILLQA 544 (884)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~ 544 (884)
+|+++++|++.|.+.+..+.
T Consensus 356 iSa~t~~Gl~~L~~~i~~~~ 375 (454)
T COG0486 356 ISAKTGEGLDALREAIKQLF 375 (454)
T ss_pred EEECCCCCHHHHHHHHHHHH
T ss_conf 98257657999999999998
No 197
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.05 E-value=5.6e-10 Score=86.19 Aligned_cols=143 Identities=19% Similarity=0.229 Sum_probs=95.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCE-E---EEECC--CCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 8986236850446777886422210012310001214-9---99517--8438888516615789998666420680599
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGA-Y---QVAYQ--GKNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga-~---~~~~~--~~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
|+++|.-..|||+|+-++......... ...||+ | .+..+ ...+.+.||+|++.|..|+..-..-+|++||
T Consensus 3 IvllGd~~VGKTsli~r~~~~~f~~~~----~~Tig~~~~~k~v~~~~~~i~l~iwDtaGqe~~~~~~~~y~r~a~~~il 78 (161)
T cd04117 3 LLLIGDSGVGKTCLLCRFTDNEFHSSH----ISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFL 78 (161)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCC----CCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHHHHHHHCEEEE
T ss_conf 999994998589999999429989987----8872089889999999999999999799960236355888764168899
Q ss_pred EEECCCCCCHHHHHHH----HHHHH---CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 9983667402357778----98997---0994156123312443320002210000132000123474036311002477
Q gi|254780787|r 460 VLAADEEIMPQAIESI----NHAKA---ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLN 532 (884)
Q Consensus 460 vv~~~~g~~~qt~e~~----~~~~~---~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (884)
|.|+.+ ++|.+.+ ..++. .++|+|++-||+|...... +..+.. ..+...+ +..+..+||++|.|
T Consensus 79 vyDvt~---~~Sf~~l~~w~~~i~~~~~~~~~~ilVgNK~Dl~~~r~--v~~~~~--~~~a~~~--~~~~~etSAk~~~n 149 (161)
T cd04117 79 VYDISS---ERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQ--VGDEQG--NKLAKEY--GMDFFETSACTNSN 149 (161)
T ss_pred ECCCCC---HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCC--CCHHHH--HHHHHHC--CCEEEEECCCCCCC
T ss_conf 614898---89999999999999987899864999873278786277--999999--9999986--99799967789829
Q ss_pred CCCCCCCHH
Q ss_conf 411221000
Q gi|254780787|r 533 LDKLLDAIL 541 (884)
Q Consensus 533 ~~~~~~~~~ 541 (884)
+++++..+.
T Consensus 150 V~e~F~~l~ 158 (161)
T cd04117 150 IKESFTRLT 158 (161)
T ss_pred HHHHHHHHH
T ss_conf 899999999
No 198
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.05 E-value=4.3e-10 Score=87.02 Aligned_cols=146 Identities=18% Similarity=0.236 Sum_probs=95.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCE------EEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 8986236850446777886422210012310001214------9995178438888516615789998666420680599
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGA------YQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga------~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
|+++|.-..|||+|+..+....-...- ...||. ..+......+.+.||+|++.|..++..=..-+|.+||
T Consensus 5 iv~vGd~~vGKTsli~r~~~~~f~~~y----~~Tig~~~~~~~i~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~a~~~il 80 (166)
T cd01869 5 LLLIGDSGVGKSCLLLRFADDTYTESY----ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 80 (166)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCC----CCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHHHHHHCCEEEE
T ss_conf 999999997899999999439999874----7854404899999999999999999899982346267888563267799
Q ss_pred EEECCCCCCHHHHHHH-HHH---HHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 9983667402357778-989---970994156123312443320002210000132000123474036311002477411
Q gi|254780787|r 460 VLAADEEIMPQAIESI-NHA---KAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDK 535 (884)
Q Consensus 460 vv~~~~g~~~qt~e~~-~~~---~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (884)
|.|+.+--.-+.+..| ..+ ...++|+|++-||+|+.... .+..+... .+...+ +...+.+||++|+|+++
T Consensus 81 vfdit~~~Sf~~i~~w~~~i~~~~~~~~~~ilvgNK~DL~~~r--~v~~~~~~--~~a~~~--~~~~~E~SAk~g~nI~e 154 (166)
T cd01869 81 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKR--VVDYSEAQ--EFADEL--GIPFLETSAKNATNVEQ 154 (166)
T ss_pred EECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCC--CCCHHHHH--HHHHHC--CCEEEEECCCCCCCHHH
T ss_conf 7117998999999999999998678777448861320113146--67999999--999983--99699987687806899
Q ss_pred CCCCHH
Q ss_conf 221000
Q gi|254780787|r 536 LLDAIL 541 (884)
Q Consensus 536 ~~~~~~ 541 (884)
+++.+.
T Consensus 155 ~F~~l~ 160 (166)
T cd01869 155 AFMTMA 160 (166)
T ss_pred HHHHHH
T ss_conf 999999
No 199
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.05 E-value=1.4e-09 Score=83.58 Aligned_cols=148 Identities=16% Similarity=0.189 Sum_probs=98.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE----EEECCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 89862368504467778864222100123100012149----995178--438888516615789998666420680599
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY----QVAYQG--KNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~----~~~~~~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
|-|+|.-.-|||+|+-.+.+..-... ...-.||+. .+..++ ..+.+-||.|++.|..|...-..-||++||
T Consensus 7 ~~VlG~~~VGKTsLi~rf~~~~f~~~---~y~~Ti~~~~~~k~v~v~g~~~~L~i~Dt~g~e~~~~l~~~~~~~ad~~il 83 (169)
T cd01892 7 CFVLGAKGSGKSALLRAFLGRSFSLN---AYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACL 83 (169)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC---CCCCCCCCEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999889999999964999866---656754661899999989999999998556532355665887546988999
Q ss_pred EEECCCCCCHHHHHHHHHHH-----HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 99836674023577789899-----7099415612331244332000221000013200012347403631100247741
Q gi|254780787|r 460 VLAADEEIMPQAIESINHAK-----AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLD 534 (884)
Q Consensus 460 vv~~~~g~~~qt~e~~~~~~-----~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (884)
|.|+.+- ++-+.+..+. ...+|+|++-||.|+.... .+.. .+...+...++- .+.+.+||++|.|++
T Consensus 84 VyDit~~---~SF~~i~~~~~~~~~~~~iP~vlVgNK~DL~~~r--qV~~--~e~~~~a~~~~~-~~~~e~SAktg~nv~ 155 (169)
T cd01892 84 VYDSSDP---KSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQ--QRYE--VQPDEFCRKLGL-PPPLHFSSKLGDSSN 155 (169)
T ss_pred EEECCCH---HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC--CCCH--HHHHHHHHHCCC-CCCEEEEEECCCCHH
T ss_conf 9979987---8999999999970056898189998865542037--5467--769999998399-966699832798989
Q ss_pred CCCCCHHCCC
Q ss_conf 1221000023
Q gi|254780787|r 535 KLLDAILLQA 544 (884)
Q Consensus 535 ~~~~~~~~~~ 544 (884)
+++..+...+
T Consensus 156 ~~F~~la~~a 165 (169)
T cd01892 156 ELFTKLATAA 165 (169)
T ss_pred HHHHHHHHHH
T ss_conf 9999999997
No 200
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.05 E-value=2.2e-09 Score=82.15 Aligned_cols=148 Identities=13% Similarity=0.219 Sum_probs=96.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE----EEECC-C--CEEEEEECCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 89862368504467778864222100123100012149----99517-8--43888851661578999866642068059
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY----QVAYQ-G--KNITFLDTPGHAAFYEMRARGARVTDIAV 458 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~----~~~~~-~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~i 458 (884)
|+++|--..|||+|+..+....-...+ .-+..||+. .++.+ + ..+.+.||.|.+.|..|+..=..-+|.+|
T Consensus 3 ivllGd~gVGKTsli~r~~~~~~~f~~--~y~~Tig~~~~~k~~~~~~~~~i~l~iwDtaG~e~~~~l~~~~~~~a~~~i 80 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHSNGAVFPK--NYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCC--CCCCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHCCEEE
T ss_conf 999995995889999999978886688--888864578899999978997999999979998400678999976426899
Q ss_pred EEEECCCCCCHHHHHH-HHHHH--HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 9998366740235777-89899--70994156123312443320002210000132000123474036311002477411
Q gi|254780787|r 459 LVLAADEEIMPQAIES-INHAK--AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDK 535 (884)
Q Consensus 459 lvv~~~~g~~~qt~e~-~~~~~--~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (884)
||.|+.+----+.+.. +..++ ..++|+|++-||+|+.... .+..+... .+...+ +..+..+||++|.|+++
T Consensus 81 lvydit~~~Sf~~~~~w~~~i~~~~~~~p~ilVgNK~DL~~~r--~V~~~e~~--~~a~~~--~~~~~E~SAk~g~nV~e 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKA--EVTDAQAQ--AFAQAN--QLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC--CCCHHHHH--HHHHHC--CCEEEEECCCCCCCHHH
T ss_conf 9970774668999999999999766898689998722445245--56999999--999988--99899986688909899
Q ss_pred CCCCHH
Q ss_conf 221000
Q gi|254780787|r 536 LLDAIL 541 (884)
Q Consensus 536 ~~~~~~ 541 (884)
+++.+.
T Consensus 155 ~F~~la 160 (164)
T cd04101 155 PFESLA 160 (164)
T ss_pred HHHHHH
T ss_conf 999999
No 201
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.05 E-value=5.8e-10 Score=86.12 Aligned_cols=148 Identities=20% Similarity=0.279 Sum_probs=96.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEE---ECCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 8986236850446777886422210012310001214999---5178--4388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQV---AYQG--KNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~---~~~~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
|+++|--..|||+|+-.+-...-.. ..+..|+..+. ..++ ..+.+.||.|++.|..||..--.-+|++|||
T Consensus 4 ivllGd~~VGKTsLi~r~~~~~f~~----~y~pTi~~~~~~~i~v~~~~v~l~iwDTaG~e~~~~~~~~~~~~a~~~ilv 79 (187)
T cd04129 4 LVIVGDGACGKTSLLSVFTLGEFPE----EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG 79 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCC----CCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCCCEECCCCEEEEE
T ss_conf 9999989976899999998298999----878866789899999999999999997888703454604123388589997
Q ss_pred EECCCCCCHHHHHHHH-----HHHH--CCCCEEEECCCCCCCCCCCCHHH----HH--HHCCCCCCCCCCCCCEEEEEEE
Q ss_conf 9836674023577789-----8997--09941561233124433200022----10--0001320001234740363110
Q gi|254780787|r 461 LAADEEIMPQAIESIN-----HAKA--ADVSIIVAINKIDKLGADPQKVR----MS--LLKHDVFVESMGGDILDVEISA 527 (884)
Q Consensus 461 v~~~~g~~~qt~e~~~-----~~~~--~~~p~iva~nk~d~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~ 527 (884)
.|+.+ ++|.+++. .++. -++|+|++-||+|+......... .. ..+.......+ +-..++.+||
T Consensus 80 ydi~~---~~Sf~~~~~~w~~~~~~~~~~~piilVGnK~DL~~~~~~~~~~~~~r~V~~~~g~~~a~~~-~~~~y~EtSA 155 (187)
T cd04129 80 FAVDT---PDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEI-GAKKYMECSA 155 (187)
T ss_pred CCCCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHC-CCCEEEEECC
T ss_conf 02698---6679999999999999858799889998860011341121112231557899999999984-9978999688
Q ss_pred CCCCCCCCCCCCHH
Q ss_conf 02477411221000
Q gi|254780787|r 528 KNNLNLDKLLDAIL 541 (884)
Q Consensus 528 ~~~~~~~~~~~~~~ 541 (884)
++++|++++++.+.
T Consensus 156 k~~~nV~e~F~~~~ 169 (187)
T cd04129 156 LTGEGVDDVFEAAT 169 (187)
T ss_pred CCCCCHHHHHHHHH
T ss_conf 99979899999999
No 202
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.05 E-value=7.4e-10 Score=85.40 Aligned_cols=146 Identities=21% Similarity=0.223 Sum_probs=95.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEE---EECC--CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 898623685044677788642221001231000121499---9517--84388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQ---VAYQ--GKNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~---~~~~--~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
|+++|--..|||+|+-.+........- ...|+.++ +..+ ...+.+.||.|++.|..|+..-..-+|.+|||
T Consensus 4 ivllGd~~VGKTsli~r~~~~~F~~~y----~~Ti~~~~~~~i~~~~~~~~l~iwDtaG~e~~~~l~~~~~~~a~~~ilv 79 (165)
T cd04140 4 VVVFGAGGVGKSSLVLRFVKGTFRESY----IPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 79 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCC----CCCCCCEEEEEEEECCEEEEEEEEECCCCCCCCCCHHHHHCCCCEEEEE
T ss_conf 999899997699999999649699986----8845420558999999999999998999846542324450688579998
Q ss_pred EECCCCCCHHHHHH----HHHHHH---CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 98366740235777----898997---09941561233124433200022100001320001234740363110024774
Q gi|254780787|r 461 LAADEEIMPQAIES----INHAKA---ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNL 533 (884)
Q Consensus 461 v~~~~g~~~qt~e~----~~~~~~---~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (884)
.|+.+=--=+.+.. +..++. .++|+|++-||+|+.... .+..+..+ .....+ +..++.+||++|.|+
T Consensus 80 ydit~~~Sf~~~~~~~~~i~~~~~~~~~~~piilVgNK~Dl~~~r--~V~~~e~~--~~a~~~--~~~~~E~SAk~~~nV 153 (165)
T cd04140 80 YSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKR--EVSSNEGA--ACATEW--NCAFMETSAKTNHNV 153 (165)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC--CCCHHHHH--HHHHHC--CCEEEEECCCCCCCH
T ss_conf 138987899999999999999961588888789986424640027--88999999--999986--988999744779487
Q ss_pred CCCCCCHH
Q ss_conf 11221000
Q gi|254780787|r 534 DKLLDAIL 541 (884)
Q Consensus 534 ~~~~~~~~ 541 (884)
+++++.+.
T Consensus 154 ~e~F~~l~ 161 (165)
T cd04140 154 QELFQELL 161 (165)
T ss_pred HHHHHHHH
T ss_conf 99999998
No 203
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.05 E-value=2e-09 Score=82.39 Aligned_cols=155 Identities=15% Similarity=0.153 Sum_probs=95.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECC-CEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 389862368504467778864222100123100012-1499951784388885166157899986664206805999983
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHI-GAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~i-ga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
=|+++|.-..|||+|+-.+.+........-.|-... --+.+......+.|.||.|++.|..+|..--.-+|++|||.|+
T Consensus 5 KivlvGd~~VGKTsli~r~~~~~F~~~y~pti~~~~~~~~~i~~~~v~l~iwDtaG~e~~~~~~~~~~~~a~~~ilvfdv 84 (191)
T cd01875 5 KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSI 84 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEEC
T ss_conf 99999999989999999997299998646621000467899999999999985888700356778774478689999857
Q ss_pred CCCCCHHHHH-HHH-HHH--HCCCCEEEECCCCCCCCCCCCHHHHHHH---------CCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 6674023577-789-899--7099415612331244332000221000---------01320001234740363110024
Q gi|254780787|r 464 DEEIMPQAIE-SIN-HAK--AADVSIIVAINKIDKLGADPQKVRMSLL---------KHDVFVESMGGDILDVEISAKNN 530 (884)
Q Consensus 464 ~~g~~~qt~e-~~~-~~~--~~~~p~iva~nk~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 530 (884)
.+=---+.+. .|. .+. ..++|+|++-||+|+..... ....+. +.+......-+...++.+||+++
T Consensus 85 t~~~Sf~~v~~~w~~ei~~~~~~~piiLvGnK~DL~~~~~--~~~~~~e~~~~~vs~eeg~~~a~~~~~~~y~EtSAkt~ 162 (191)
T cd01875 85 ASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDAD--TLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQ 162 (191)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHH--HHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEECCCCCC
T ss_conf 9778899999999999997096997899988801023457--78887764137556999999999809988999068989
Q ss_pred CCCCCCCCCHH
Q ss_conf 77411221000
Q gi|254780787|r 531 LNLDKLLDAIL 541 (884)
Q Consensus 531 ~~~~~~~~~~~ 541 (884)
.|+++++..+.
T Consensus 163 ~nV~e~F~~l~ 173 (191)
T cd01875 163 DGVKEVFAEAV 173 (191)
T ss_pred CCHHHHHHHHH
T ss_conf 69899999999
No 204
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.04 E-value=8.1e-10 Score=85.12 Aligned_cols=144 Identities=21% Similarity=0.296 Sum_probs=96.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEE----EE--CCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 898623685044677788642221001231000121499----95--178438888516615789998666420680599
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQ----VA--YQGKNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~----~~--~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
|+++|---.|||+|+-.+.+..-. +. ....||+.+ +. .....+.|.||+|++.|..|+..-..-++++||
T Consensus 3 IvllGd~gVGKTsLi~rf~~~~F~--~~--y~~Tig~d~~~k~i~~~~~~v~l~IWDTaGqe~f~sl~~~yyr~a~~~il 78 (202)
T cd04120 3 VIIIGSRGVGKTSLMRRFTDDTFC--EA--CKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIIL 78 (202)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC--CC--CCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHHHHHHHCEEEE
T ss_conf 999997997299999999549999--98--79976468899999999999999999798861245235788764144589
Q ss_pred EEECCCCCCHHHHHHHH----HHH---HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 99836674023577789----899---70994156123312443320002210000132000123474036311002477
Q gi|254780787|r 460 VLAADEEIMPQAIESIN----HAK---AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLN 532 (884)
Q Consensus 460 vv~~~~g~~~qt~e~~~----~~~---~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (884)
|.|+.+ .+|.+++. .+. ..++|+|++-||+|+.... .+..+..+ .+.... ....++.+||+++.|
T Consensus 79 VyDit~---~~SF~~l~~W~~~i~~~~~~~~~iiLVGNK~DL~~~R--~Vs~~e~~--~~A~~~-~~~~f~EtSAkt~~n 150 (202)
T cd04120 79 VYDITK---KETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR--EISRQQGE--KFAQQI-TGMRFCEASAKDNFN 150 (202)
T ss_pred EEECCC---HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHC--CCCHHHHH--HHHHHC-CCCEEEECCCCCCCC
T ss_conf 985688---8999999999999997466887189876536505317--87999999--999827-998899925899969
Q ss_pred CCCCCCCHH
Q ss_conf 411221000
Q gi|254780787|r 533 LDKLLDAIL 541 (884)
Q Consensus 533 ~~~~~~~~~ 541 (884)
++++++.+.
T Consensus 151 V~e~F~~l~ 159 (202)
T cd04120 151 VDEIFLKLV 159 (202)
T ss_pred HHHHHHHHH
T ss_conf 899999999
No 205
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.04 E-value=3.8e-09 Score=80.53 Aligned_cols=147 Identities=18% Similarity=0.234 Sum_probs=102.8
Q ss_pred CCCCCCCCCCEEEEEECCCCCHHHHHHHHHH--HHHHHCC-CCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHH
Q ss_conf 4100125530389862368504467778864--2221001-231000121499951784388885166157899986664
Q gi|254780787|r 375 SESDLDIRPPVVTIMGHVDHGKTSLLDAIRK--ADVAKGE-IGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGA 451 (884)
Q Consensus 375 ~~~~~~~R~pvv~v~ghvd~GKt~lld~~r~--~~~~~~e-~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~ 451 (884)
+.....+-|.||+|.|-=..|||||+..|-+ |...-.+ .|-||. +.....++|||.+| .+. +-+.--|
T Consensus 31 dr~~~epPP~vVavvGPpgvGKtTLiksLvk~ytk~~l~~i~GPiTv------vs~K~rRiTfiEc~--nDi-~smiD~A 101 (225)
T cd01882 31 DRTPEEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITV------VTGKKRRLTFIECP--NDI-NAMIDIA 101 (225)
T ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEE------EECCCEEEEEEECC--CHH-HHHHHHH
T ss_conf 35878999969999898997788999999999854437557888799------94684268999748--609-9998788
Q ss_pred HCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE-CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 2068059999836674023577789899709941561-233124433200022100001320001234740363110024
Q gi|254780787|r 452 RVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVA-INKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNN 530 (884)
Q Consensus 452 ~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva-~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (884)
.++|+++|+||+.-|++-.|.|.++++...|.|-|+. ++-+|....+.........-...+..+...+......|++..
T Consensus 102 KvADlVLl~iD~s~GfEmEtfEfLnilq~hG~PkV~GVltHlD~fk~~k~lrk~KK~lk~RFwtE~y~gaKlFylsg~~~ 181 (225)
T cd01882 102 KVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVH 181 (225)
T ss_pred HHHHEEEEEECCCCCEEEEHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 76433688861665535208999999997599943788544310155788999999999999998659956886335324
No 206
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.04 E-value=1.5e-09 Score=83.32 Aligned_cols=147 Identities=16% Similarity=0.231 Sum_probs=95.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE---EEECCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89862368504467778864222100123100012149---995178--4388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY---QVAYQG--KNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~---~~~~~~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
|+++|.-..|||+|+-++..-.-...- ...|+.. .+..++ ..+.+.||+|++.|..||.---.-+|++|||
T Consensus 4 ivlvGd~~VGKTsLi~r~~~~~F~~~y----~pTi~~~~~~~~~v~~~~v~l~iwDTaGqe~~~~l~~~~y~~a~~~ilv 79 (178)
T cd04131 4 IVVVGDVQCGKTALLQVFAKDCYPETY----VPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCC----CCCEEEEEEEEEEECCEEEEEEEEECCCCHHHCCHHHHHHCCCCEEEEE
T ss_conf 999999997789999999639999985----7856888899999999999999996898742110366773468789999
Q ss_pred EECCCCCCHHHHHHH----H-HHHH--CCCCEEEECCCCCCCCCCCCHHHHHHH---------CCCCCCCCCCCCCEEEE
Q ss_conf 983667402357778----9-8997--099415612331244332000221000---------01320001234740363
Q gi|254780787|r 461 LAADEEIMPQAIESI----N-HAKA--ADVSIIVAINKIDKLGADPQKVRMSLL---------KHDVFVESMGGDILDVE 524 (884)
Q Consensus 461 v~~~~g~~~qt~e~~----~-~~~~--~~~p~iva~nk~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 524 (884)
.|+.+ +.|.+++ . .++. -++|+|++-||+|+-...... ..+. +.+......-+-..++.
T Consensus 80 ydit~---~~Sf~~v~~~W~~ei~~~~~~~~iiLVGnK~DLr~~~~~~--~~~~~~~~~~Vs~eeg~~~A~~~ga~~y~E 154 (178)
T cd04131 80 FDISR---PETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTL--MELSHQRQAPVSYEQGCAIAKQLGAEIYLE 154 (178)
T ss_pred EECCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHH--HHHHHCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 73798---7889999999999999868799889999854366444556--677644677768999999999749989999
Q ss_pred EEECCCC-CCCCCCCCHH
Q ss_conf 1100247-7411221000
Q gi|254780787|r 525 ISAKNNL-NLDKLLDAIL 541 (884)
Q Consensus 525 ~~~~~~~-~~~~~~~~~~ 541 (884)
+||++|+ |++++++.+.
T Consensus 155 tSAktg~ngV~evF~~a~ 172 (178)
T cd04131 155 CSAFTSEKSVRDIFHVAT 172 (178)
T ss_pred CCCCCCCCCHHHHHHHHH
T ss_conf 784868739899999999
No 207
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.03 E-value=9.7e-10 Score=84.59 Aligned_cols=146 Identities=21% Similarity=0.337 Sum_probs=95.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE----EE--ECCC--CEEEEEECCCHHHHHHHHHHHHHCCCCE
Q ss_conf 89862368504467778864222100123100012149----99--5178--4388885166157899986664206805
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY----QV--AYQG--KNITFLDTPGHAAFYEMRARGARVTDIA 457 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~----~~--~~~~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~ 457 (884)
|+|+|.-..|||+|+-.+....-... ....||.- .+ ...+ ..+.+.||+|++.|..|+..=..-+|++
T Consensus 3 ivvlGd~~VGKTsLi~r~~~~~f~~~----y~~Tig~~~~~k~i~~~~~~~~v~l~iwDtaG~e~~~~l~~~~~~~a~~~ 78 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKGIFTKD----YKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 78 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCHHHHHHHHCCE
T ss_conf 99999999889999999984968987----68855625788789986799799999997899701341524561230312
Q ss_pred EEEEECCCCCCHHHHHHHHH-H--HHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 99998366740235777898-9--97099415612331244332000221000013200012347403631100247741
Q gi|254780787|r 458 VLVLAADEEIMPQAIESINH-A--KAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLD 534 (884)
Q Consensus 458 ilvv~~~~g~~~qt~e~~~~-~--~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (884)
|||.|+.+--.=+.++.|.. + ...++|+|++-||+|+.... .+..+. ...+...+ +..+..+||++|.|++
T Consensus 79 ilvydvt~~~Sf~~l~~w~~~~~~~~~~~piilVgNK~DL~~~r--~V~~~e--~~~~a~~~--~~~~~E~SAk~~~nV~ 152 (162)
T cd04106 79 ILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQA--VITNEE--AEALAKRL--QLPLFRTSVKDDFNVT 152 (162)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCC--CCCHHH--HHHHHHHC--CCEEEEECCCCCCCHH
T ss_conf 68840698899999999999999766996299984054441017--789999--99999986--9879998688882989
Q ss_pred CCCCCHH
Q ss_conf 1221000
Q gi|254780787|r 535 KLLDAIL 541 (884)
Q Consensus 535 ~~~~~~~ 541 (884)
++++.+.
T Consensus 153 e~F~~la 159 (162)
T cd04106 153 ELFEYLA 159 (162)
T ss_pred HHHHHHH
T ss_conf 9999999
No 208
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.03 E-value=6.8e-10 Score=85.63 Aligned_cols=143 Identities=21% Similarity=0.305 Sum_probs=96.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCE------EEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 8986236850446777886422210012310001214------9995178438888516615789998666420680599
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGA------YQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga------~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
|+++|--..|||+|+-++.+..-... -...||+ ..+......+.|.||+|.+.|..++..=..-+|++||
T Consensus 10 ivllGd~~VGKTsli~r~~~~~f~~~----~~~Tig~d~~~k~i~~~~~~v~l~iwDtaG~e~~~~l~~~~~~~a~~~il 85 (169)
T cd04114 10 IVLIGNAGVGKTCLVRRFTQGLFPPG----QGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHHHHHCCCEEEE
T ss_conf 99999899799999999985989998----67741247899999999999999999899984445155777423664599
Q ss_pred EEECCCCCCHHHHHHH----HHHHH---CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 9983667402357778----98997---0994156123312443320002210000132000123474036311002477
Q gi|254780787|r 460 VLAADEEIMPQAIESI----NHAKA---ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLN 532 (884)
Q Consensus 460 vv~~~~g~~~qt~e~~----~~~~~---~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (884)
|.|..+ +++.+++ ..++. .++|+|++-||+|+.... .+..+..+. +... .+..++.+||++|.|
T Consensus 86 vydvt~---~~Sf~~l~~w~~~i~~~~~~~~~~ilVGNK~DL~~~r--~v~~~~~~~--~a~~--~~~~~~E~SAktg~n 156 (169)
T cd04114 86 TYDITC---EESFRCLPEWLREIEQYANNKVITILVGNKIDLAERR--EVSQQRAEE--FSDA--QDMYYLETSAKESDN 156 (169)
T ss_pred EECCCC---HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHCC--CCCHHHHHH--HHHH--CCCEEEEECCCCCCC
T ss_conf 814898---8899999999999998689886389731134345417--889999999--9998--899999986898808
Q ss_pred CCCCCCCHH
Q ss_conf 411221000
Q gi|254780787|r 533 LDKLLDAIL 541 (884)
Q Consensus 533 ~~~~~~~~~ 541 (884)
+++++..+.
T Consensus 157 V~e~F~~la 165 (169)
T cd04114 157 VEKLFLDLA 165 (169)
T ss_pred HHHHHHHHH
T ss_conf 899999999
No 209
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.02 E-value=1.8e-09 Score=82.71 Aligned_cols=150 Identities=19% Similarity=0.209 Sum_probs=98.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCC--CCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 89862368504467778864222100123--1000121499951784388885166157899986664206805999983
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIG--GITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~g--gitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
|+|+|.-..|||+|+.++-+.+......- |+.-+--...+......+.+.||+|.+.|.+++..-..-+|++|||.|.
T Consensus 3 i~vvG~~~vGKTsli~r~~~~~f~~~~~~tig~d~~~k~v~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~~~~ilvfd~ 82 (161)
T cd01861 3 LVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDI 82 (161)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHHCEEEEEEEC
T ss_conf 99999799789999999931999998489756788999999999999999997998531578889886652589999847
Q ss_pred CCCCCHHHHHHHH-HHHH---CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 6674023577789-8997---09941561233124433200022100001320001234740363110024774112210
Q gi|254780787|r 464 DEEIMPQAIESIN-HAKA---ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDA 539 (884)
Q Consensus 464 ~~g~~~qt~e~~~-~~~~---~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (884)
.+--.-+.+..+. .++. ...|++++-||+|+..... +...... .+...+ +...+.+||+++.|++++++.
T Consensus 83 t~~~Sf~~~~~w~~~i~~~~~~~~~ivlvGnK~Dl~~~r~--v~~~e~~--~~a~~~--~~~y~E~Sak~~~nV~e~F~~ 156 (161)
T cd01861 83 TNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQ--VSTEEGE--KKAKEL--NAMFIETSAKAGHNVKELFRK 156 (161)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHCCC--CCHHHHH--HHHHHC--CCEEEEECCCCCCCHHHHHHH
T ss_conf 9989999999999999986578984999610211022177--8999999--999984--998999834778088999999
Q ss_pred HH
Q ss_conf 00
Q gi|254780787|r 540 IL 541 (884)
Q Consensus 540 ~~ 541 (884)
+.
T Consensus 157 la 158 (161)
T cd01861 157 IA 158 (161)
T ss_pred HH
T ss_conf 99
No 210
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.01 E-value=7.1e-10 Score=85.50 Aligned_cols=146 Identities=18% Similarity=0.213 Sum_probs=96.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCE------EEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 8986236850446777886422210012310001214------9995178438888516615789998666420680599
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGA------YQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga------~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
|+++|.-..|||+|+-++.+......- ...||. ..+......+.+.||+|.+.|..|+..=..-+|++||
T Consensus 4 ivllGd~~VGKTsli~r~~~~~f~~~y----~~Tig~~~~~k~i~~~~~~i~l~iwDtaGqe~~~~l~~~y~~~a~~~il 79 (165)
T cd01865 4 LLIIGNSSVGKTSFLFRYADDSFTSAF----VSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 79 (165)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCC----CCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHHHHHCCCEEEE
T ss_conf 999999996889999999249889976----8876378799999999999999999699983455441544113544899
Q ss_pred EEECCCCCCHHHHHH-HHHHHHC---CCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 998366740235777-8989970---994156123312443320002210000132000123474036311002477411
Q gi|254780787|r 460 VLAADEEIMPQAIES-INHAKAA---DVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDK 535 (884)
Q Consensus 460 vv~~~~g~~~qt~e~-~~~~~~~---~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (884)
|.|+.+----+.+.. +..++.. +.|+|++-||+|+.... .+..+..+ .+...+ +..+..+||+++.|+++
T Consensus 80 vydit~~~Sf~~~~~w~~~i~~~~~~~~~iilvgNK~DL~~~r--~v~~~~~~--~~a~~~--~~~~~E~SAk~~~nV~e 153 (165)
T cd01865 80 MYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDER--VVSSERGR--QLADQL--GFEFFEASAKENINVKQ 153 (165)
T ss_pred EECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCC--CCCHHHHH--HHHHHC--CCEEEEECCCCCCCHHH
T ss_conf 8517887999999999999998689872599960242355518--89999999--999986--99799976898908899
Q ss_pred CCCCHH
Q ss_conf 221000
Q gi|254780787|r 536 LLDAIL 541 (884)
Q Consensus 536 ~~~~~~ 541 (884)
+++.+.
T Consensus 154 ~F~~l~ 159 (165)
T cd01865 154 VFERLV 159 (165)
T ss_pred HHHHHH
T ss_conf 999999
No 211
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.01 E-value=2.2e-09 Score=82.10 Aligned_cols=149 Identities=19% Similarity=0.236 Sum_probs=93.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEE---EEC--CCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 898623685044677788642221001231000121499---951--784388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQ---VAY--QGKNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~---~~~--~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
|.++|.-..|||+|+-.+.+..-..... ..|+..+ +.. ....+.+.||+|++.|..||.---.-+|++|||
T Consensus 4 ivllGd~~VGKTsL~~rf~~~~F~~~~~----pTi~~~~~~~i~v~~~~~~l~iwDTaG~e~~~~l~~~~y~~a~~~ilv 79 (176)
T cd04133 4 CVTVGDGAVGKTCMLICYTSNKFPTDYI----PTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 79 (176)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCC----CCEEEEEEEEEEECCEEEEEEEEECCCCCCCCHHHHHHHCCCCEEEEE
T ss_conf 9998999977999999996598999867----853589999999999899999997999765424689872678757999
Q ss_pred EECCCCCCHHHHHH-----HHHHH--HCCCCEEEECCCCCCCCCCCCH---HHH-HHH-CCCCCCCCCCCCCEEEEEEEC
Q ss_conf 98366740235777-----89899--7099415612331244332000---221-000-013200012347403631100
Q gi|254780787|r 461 LAADEEIMPQAIES-----INHAK--AADVSIIVAINKIDKLGADPQK---VRM-SLL-KHDVFVESMGGDILDVEISAK 528 (884)
Q Consensus 461 v~~~~g~~~qt~e~-----~~~~~--~~~~p~iva~nk~d~~~~~~~~---~~~-~~~-~~~~~~~~~~~~~~~~~~~~~ 528 (884)
.|+.+= +|.+. +..++ .-++|+|++-||+|+....... ... ... ..+.......+...++.+||+
T Consensus 80 ydi~~~---~Sf~~~~~~w~~~~~~~~~~~piilvGnK~DL~~~r~~~~~~~~~~~Vs~~e~~~~a~~~~~~~y~EtSAk 156 (176)
T cd04133 80 FSLISR---ASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSK 156 (176)
T ss_pred EECCCH---HHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf 978987---89999999999999986849988999986320212223333024677779999999997799789994789
Q ss_pred CCCCCCCCCCCHH
Q ss_conf 2477411221000
Q gi|254780787|r 529 NNLNLDKLLDAIL 541 (884)
Q Consensus 529 ~~~~~~~~~~~~~ 541 (884)
++.|++++++.+.
T Consensus 157 ~~~nV~e~F~~~~ 169 (176)
T cd04133 157 TQQNVKAVFDAAI 169 (176)
T ss_pred CCCCHHHHHHHHH
T ss_conf 8809899999999
No 212
>COG2262 HflX GTPases [General function prediction only]
Probab=99.00 E-value=6.5e-09 Score=78.92 Aligned_cols=150 Identities=25% Similarity=0.324 Sum_probs=98.2
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECC-CCEEEEEECCCH---------HHHHHHHHHH
Q ss_conf 553038986236850446777886422210012310001214999517-843888851661---------5789998666
Q gi|254780787|r 381 IRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQ-GKNITFLDTPGH---------AAFYEMRARG 450 (884)
Q Consensus 381 ~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~-~~~~~~iDtPGh---------~~f~~~r~rg 450 (884)
.--|.|.+.|--+.||+|||-.|.+.++...-.=--|-.--.-.+... +..+.+-||-|+ +||-+.-. -
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLE-E 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLE-E 268 (411)
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHCCCEECCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHH-H
T ss_conf 699758987323444999998872457130466642105740489807996499865756715598679999999898-7
Q ss_pred HHCCCCEEEEEECCCC-CCHHHHHHHHHHHHC---CCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEE
Q ss_conf 4206805999983667-402357778989970---994156123312443320002210000132000123474036311
Q gi|254780787|r 451 ARVTDIAVLVLAADEE-IMPQAIESINHAKAA---DVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEIS 526 (884)
Q Consensus 451 ~~~~d~~ilvv~~~~g-~~~qt~e~~~~~~~~---~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (884)
+.-+|+.++|||+-|. +..|-.-+.+++... ..|.|+++||||+..... ........ . ...+.+|
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~~~------~--~~~v~iS 337 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE---ILAELERG------S--PNPVFIS 337 (411)
T ss_pred HHCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHH---HHHHHHHC------C--CCEEEEE
T ss_conf 62277799974068851899999999999974889997899976410157322---23456634------8--9748998
Q ss_pred ECCCCCCCCCCCCHHC
Q ss_conf 0024774112210000
Q gi|254780787|r 527 AKNNLNLDKLLDAILL 542 (884)
Q Consensus 527 ~~~~~~~~~~~~~~~~ 542 (884)
|.++.|++.|++.+..
T Consensus 338 A~~~~gl~~L~~~i~~ 353 (411)
T COG2262 338 AKTGEGLDLLRERIIE 353 (411)
T ss_pred ECCCCCHHHHHHHHHH
T ss_conf 0667598999999999
No 213
>TIGR00450 thdF tRNA modification GTPase TrmE; InterPro: IPR004520 The GTP-binding domain of all TrmE/ThdF orthologues is found in the C-terminal portion of the molecule. The N-terminal half can be removed without affecting the GTP-binding/hydrolysis function of the GTP-binding domain. The last four amino acids of all orthologues of ThdF/TrmE are highly conserved, being either CIGK or CLGK. This matches the Caax (where 'a' represents an aliphatic amino acid, and 'x' represents any amino acid) motif for isoprenylation that anchors small GTP-binding proteins to cell membranes in eukaryotic cells. However, protein isoprenylation has never been shown to occur in bacteria. Interestingly, biochemical experiments have shown that the Escherichia coli TrmE protein peripherally associates with the membrane fraction . Although the biochemical properties of TrmE have been investigated for the E. coli and Thermotoga maritima proteins, nothing is known about the relationship of this protein to tRNA modification. Orthologues of TrmE are present in eukaryotes and bacteria, but are not present in archaea. In Saccharomyces cerevisiae, Mss1p is a nuclear-encoded mitochondrial protein that is the yeast orthologue of TrmE. Mss1p interacts with the 15S rRNA of the yeast mitochondria, which is equivalent to the 16S rRNA of bacteria. Subsequent analysis of the S. cerevisiae MTO1 gene suggests that MSS1 and MTO1 act together in a pathway involved in optimizing mitochondrial protein synthesis. TrmE may play a role in tRNA processing and may be directly or indirectly involved in regulating ribosome function.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006400 tRNA modification, 0005622 intracellular.
Probab=98.96 E-value=6e-09 Score=79.15 Aligned_cols=188 Identities=20% Similarity=0.283 Sum_probs=120.2
Q ss_pred CCCHHHHHHHHHHHCCHHHHHHHHCCEE--ECCCCCCCHHHHH-HHHHHHCCCCCCCCCHHHHHHHHHHC-C-CCC-CCC
Q ss_conf 1100001222222100134555302400--0234455356677-66654101111222101233322101-2-410-012
Q gi|254780787|r 307 TITIQELSQRMSERSADVIKFLMKEGQI--MKPGDVIDADLSE-IIANEFGNTVKRVLESDIEVGIFDVA-D-SES-DLD 380 (884)
Q Consensus 307 ~itv~ELA~~m~~~~~evik~l~~~G~~--~t~nq~lD~etae-lva~E~g~ev~~~~~~~~~~~~~~~~-~-~~~-~~~ 380 (884)
.+.+..|+..|...-.++...+..+-.. +.++...|.+-.. ....-..-.+.. ..+..+..+.... . ... ..+
T Consensus 143 ~~~l~~L~G~l~~~i~~~~~~~l~ll~~~ev~iDY~~~~~e~d~~~~~~~~~~~~~-~~~~L~~i~~~~~aq~~~~vl~~ 221 (473)
T TIGR00450 143 DIALNKLAGELDQKIEELRKSLLQLLAQVEVNIDYEEDDDELDQLELVSLNQKLEK-IIAELKDILNSANAQRSKKVLEK 221 (473)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998506712256899999998888874310267545775311200017899999-99999999987641003458998
Q ss_pred CCCCE-EEEEECCCCCHHHHHHHHHHHHHHH-CCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHH-------HHHHH-
Q ss_conf 55303-8986236850446777886422210-01231000121499951784388885166157899-------98666-
Q gi|254780787|r 381 IRPPV-VTIMGHVDHGKTSLLDAIRKADVAK-GEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYE-------MRARG- 450 (884)
Q Consensus 381 ~R~pv-v~v~ghvd~GKt~lld~~r~~~~~~-~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~-------~r~rg- 450 (884)
++.|+ ++|.|.++.||+|||-++..+.-+- ..--|-|-.+==-.+..+|+.+.+|||=|=-.-.+ .+++.
T Consensus 222 l~~g~k~ai~G~~NvGKSSLLNa~l~~DrAiVS~~kGtTRD~vE~~~~L~G~~~~~lDTAGiR~~~~~~E~~GiekS~~~ 301 (473)
T TIGR00450 222 LKDGFKLAIVGKPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILVKLLDTAGIREHADKVERLGIEKSFKA 301 (473)
T ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 40894799964788757899998762287055276688320442057774678998514675102004667768998999
Q ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 420680599998366740235777898997099415612331244
Q gi|254780787|r 451 ARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKL 495 (884)
Q Consensus 451 ~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~ 495 (884)
..-||++|+|+|+.+|..+.-.+-|...++.+-|||+++||+|+.
T Consensus 302 i~~A~LVi~~~D~~~~~~~ddf~li~~~~k~~k~~~~V~NK~DL~ 346 (473)
T TIGR00450 302 IKQADLVIYVLDASQPLTKDDFELIITLNKKKKPLILVLNKIDLA 346 (473)
T ss_pred HHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 860573478887478988105899999732179779997350165
No 214
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.96 E-value=3.8e-09 Score=80.53 Aligned_cols=143 Identities=20% Similarity=0.265 Sum_probs=92.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCE------EEEECCCCEEEEEECCCHHHH-HHHHHHHHHCCCCEE
Q ss_conf 8986236850446777886422210012310001214------999517843888851661578-999866642068059
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGA------YQVAYQGKNITFLDTPGHAAF-YEMRARGARVTDIAV 458 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga------~~~~~~~~~~~~iDtPGh~~f-~~~r~rg~~~~d~~i 458 (884)
|+++|.--.|||+|+-.+....-...- ...||. ..+......+.|.||+|++.| ..|+..--.-+|++|
T Consensus 5 iv~lGd~~VGKTsli~r~~~~~F~~~~----~~Tig~d~~~k~i~v~~~~v~l~iwDtaG~e~~~~s~~~~~~~~a~~~i 80 (170)
T cd04115 5 IIVIGDSNVGKTCLTYRFCAGRFPERT----EATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCC----CCCEEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHCCCCEEE
T ss_conf 999997997799999999539889987----8863078789999999999999999778853056777899845773579
Q ss_pred EEEECCCCCCHHHHHHHH----HHH----HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEC--
Q ss_conf 999836674023577789----899----7099415612331244332000221000013200012347403631100--
Q gi|254780787|r 459 LVLAADEEIMPQAIESIN----HAK----AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAK-- 528 (884)
Q Consensus 459 lvv~~~~g~~~qt~e~~~----~~~----~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 528 (884)
||.|+.+ +++.+.+. .++ ...+|+|++-||+|+.... .+..+... .+...+ +..+..+||+
T Consensus 81 lvydvt~---~~Sf~~~~~w~~~i~~~~~~~~~p~vlVGNK~DL~~~r--~Vs~~e~~--~~a~~~--~~~~~E~SAK~~ 151 (170)
T cd04115 81 FVYDVTN---MASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQI--QVPTDLAQ--RFADAH--SMPLFETSAKDP 151 (170)
T ss_pred EEEECCC---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHC--CCCHHHHH--HHHHHC--CCEEEEECCCCC
T ss_conf 9950474---76799999999999986588899799999982134117--87999999--999977--999999888998
Q ss_pred -CCCCCCCCCCCHH
Q ss_conf -2477411221000
Q gi|254780787|r 529 -NNLNLDKLLDAIL 541 (884)
Q Consensus 529 -~~~~~~~~~~~~~ 541 (884)
+++|++.++..+.
T Consensus 152 ~~~~nV~~~F~~la 165 (170)
T cd04115 152 SENDHVEAIFMTLA 165 (170)
T ss_pred CCCCCHHHHHHHHH
T ss_conf 51708899999999
No 215
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.96 E-value=6.8e-09 Score=78.78 Aligned_cols=151 Identities=23% Similarity=0.246 Sum_probs=94.5
Q ss_pred EEEEECCCCCHHHHHHHHHH-HHHHHCCCCCCEECCCEE--EEECCC--CEEEEEECCCHHH--------HHHHHHHHHH
Q ss_conf 89862368504467778864-222100123100012149--995178--4388885166157--------8999866642
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRK-ADVAKGEIGGITQHIGAY--QVAYQG--KNITFLDTPGHAA--------FYEMRARGAR 452 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~-~~~~~~e~ggitq~iga~--~~~~~~--~~~~~iDtPGh~~--------f~~~r~rg~~ 452 (884)
|+|||.-..|||+|+-..-. .-.....+ |.....| .+..++ ..+.+.||||.+. |..+|.|+..
T Consensus 3 ivvlG~~gVGKTsli~rf~~~~F~~~y~p---Tig~~~~~k~v~~dg~~~~l~IwDtag~~~~~~tagqe~~~~r~~~ir 79 (198)
T cd04142 3 VAVLGAPGVGKTAIVRQFLAQEFPEEYIP---TEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLR 79 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCC---CCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 99999799899999999971988887478---466167899999999999999995877304555652123555644014
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHH-HH---H---HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEE
Q ss_conf 068059999836674023577789-89---9---7099415612331244332000221000013200012347403631
Q gi|254780787|r 453 VTDIAVLVLAADEEIMPQAIESIN-HA---K---AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEI 525 (884)
Q Consensus 453 ~~d~~ilvv~~~~g~~~qt~e~~~-~~---~---~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (884)
-+|.+|||.|+.+---=+-+..|. .+ + ...+|+|++-||+|+.... .+..+-... .. ....+..++.+
T Consensus 80 ~a~~~ilVydvt~~~SF~~v~~~~~~i~~~~~~~~~~~piiLVGNK~DL~~~R--~v~~~~~~~--~a-~~~~~~~f~Et 154 (198)
T cd04142 80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHR--FAPRHVLSV--LV-RKSWKCGYLEC 154 (198)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC--CCCHHHHHH--HH-HHCCCCEEEEC
T ss_conf 68889999988677888999999999999851479998289983454310035--688999999--99-85199769988
Q ss_pred EECCCCCCCCCCCCHHCCC
Q ss_conf 1002477411221000023
Q gi|254780787|r 526 SAKNNLNLDKLLDAILLQA 544 (884)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~ 544 (884)
||+++.|++++++.++...
T Consensus 155 SAK~~~nV~~~F~~lvr~i 173 (198)
T cd04142 155 SAKYNWHILLLFKELLISA 173 (198)
T ss_pred CCCCCCCHHHHHHHHHHHH
T ss_conf 7889969899999999999
No 216
>PRK12299 obgE GTPase ObgE; Reviewed
Probab=98.94 E-value=5.9e-09 Score=79.21 Aligned_cols=145 Identities=23% Similarity=0.338 Sum_probs=99.0
Q ss_pred EEEEECCCCCHHHHHHHHHH--HHHHHCCCCCCEECCCEEEEECCCCEEEEEECCC-----HHHH--HHHHHHHHHCCCC
Q ss_conf 89862368504467778864--2221001231000121499951784388885166-----1578--9998666420680
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRK--ADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPG-----HAAF--YEMRARGARVTDI 456 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~--~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPG-----h~~f--~~~r~rg~~~~d~ 456 (884)
|.++|-=+.||+|||-+|.+ ..|++...-.++=++|...+. +...+++.|+|| |+-- -.---|-..=|.+
T Consensus 161 VgLVG~PNaGKSTLl~~is~A~pkIa~YpFTTl~P~lGvv~~~-d~~~~~iaDiPGlIegA~~g~GLG~~FLrHieR~~~ 239 (334)
T PRK12299 161 VGLVGLPNAGKSTLISSVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRL 239 (334)
T ss_pred CEEEECCCCCHHHHHHHHHCCCCCCCCCCCEECCCEEEEEEEC-CCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCE
T ss_conf 0146369874669999876476433578730038754799946-886789986674335523477747899876653436
Q ss_pred EEEEEECCCCCCHHHHHHHHH----HHH-----CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEE
Q ss_conf 599998366740235777898----997-----09941561233124433200022100001320001234740363110
Q gi|254780787|r 457 AVLVLAADEEIMPQAIESINH----AKA-----ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISA 527 (884)
Q Consensus 457 ~ilvv~~~~g~~~qt~e~~~~----~~~-----~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (884)
.+.|||+... ..++.+.. ++. .+.|.||++||||.+.... ...+... +.... ....+++||
T Consensus 240 L~~viD~s~~---d~~~~~~~l~~EL~~y~~~L~~Kp~ivvlNK~Dl~~~~~---~~~~~~~--~~~~~--~~~v~~ISA 309 (334)
T PRK12299 240 LLHLVDASSE---DPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEE---RKEKIKE--LIKAL--GGPVFLISA 309 (334)
T ss_pred EEEEEECCCC---CHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH---HHHHHHH--HHHHC--CCCEEEEEC
T ss_conf 9999979988---989999999999998506553698799998810688567---8999999--99870--996899978
Q ss_pred CCCCCCCCCCCCHH
Q ss_conf 02477411221000
Q gi|254780787|r 528 KNNLNLDKLLDAIL 541 (884)
Q Consensus 528 ~~~~~~~~~~~~~~ 541 (884)
.+++|+++|++.+.
T Consensus 310 ~~g~Gl~eL~~~i~ 323 (334)
T PRK12299 310 VTGEGLDELLRALW 323 (334)
T ss_pred CCCCCHHHHHHHHH
T ss_conf 77849999999999
No 217
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.94 E-value=9.4e-09 Score=77.85 Aligned_cols=160 Identities=20% Similarity=0.220 Sum_probs=108.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECC--CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 38986236850446777886422210012310001214999517--8438888516615789998666420680599998
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQ--GKNITFLDTPGHAAFYEMRARGARVTDIAVLVLA 462 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~--~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~ 462 (884)
=|.|+|....|||||+-++.+.....+-.-.|+..+.+..+... ...+.++||+|++.|..++.---.-++.+++|+|
T Consensus 7 kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d 86 (219)
T COG1100 7 KIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYD 86 (219)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEECCCCCEEECCCCCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 99999999998899999996476765567614540432036226660026767679869999988750438978999997
Q ss_pred CCC--CCCHHHHHHHHHHHHC---CCCEEEECCCCCCCCCCCCHHHH-------H-H-HCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 366--7402357778989970---99415612331244332000221-------0-0-0013200012347403631100
Q gi|254780787|r 463 ADE--EIMPQAIESINHAKAA---DVSIIVAINKIDKLGADPQKVRM-------S-L-LKHDVFVESMGGDILDVEISAK 528 (884)
Q Consensus 463 ~~~--g~~~qt~e~~~~~~~~---~~p~iva~nk~d~~~~~~~~~~~-------~-~-~~~~~~~~~~~~~~~~~~~~~~ 528 (884)
... +...=+.+-+..+... .+|+|++.||+|+.........- . + ................+.+|+.
T Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 166 (219)
T COG1100 87 STLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAK 166 (219)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHEEEEE
T ss_conf 62056578899999999987466886799969761055430136788775324530002223444233200044324210
Q ss_pred --CCCCCCCCCCCHHCCC
Q ss_conf --2477411221000023
Q gi|254780787|r 529 --NNLNLDKLLDAILLQA 544 (884)
Q Consensus 529 --~~~~~~~~~~~~~~~~ 544 (884)
.+.++..++.......
T Consensus 167 ~~~~~~v~~~~~~~~~~~ 184 (219)
T COG1100 167 SLTGPNVNELFKELLRKL 184 (219)
T ss_pred CCCCCCHHHHHHHHHHHH
T ss_conf 167878789999999999
No 218
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.94 E-value=5.8e-09 Score=79.25 Aligned_cols=145 Identities=18% Similarity=0.244 Sum_probs=92.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHH-HHHCCCCCCEECCCEE-----EEECCCCEEEEEECCCHHHHHHH-HHHHHHCCCCEE
Q ss_conf 8986236850446777886422-2100123100012149-----99517843888851661578999-866642068059
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKAD-VAKGEIGGITQHIGAY-----QVAYQGKNITFLDTPGHAAFYEM-RARGARVTDIAV 458 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~-~~~~e~ggitq~iga~-----~~~~~~~~~~~iDtPGh~~f~~~-r~rg~~~~d~~i 458 (884)
|+++|.-..|||+|+..+-+.. ..... ..||.. .+......+.+.||+|.+.|..+ +.+=..-+|++|
T Consensus 2 iv~vGd~~VGKTsli~rf~~~~f~~~y~-----~T~~~~~~~~~~v~~~~~~l~iwDtaG~e~~~~~~~~~~~~~a~~~i 76 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLTKRFIGEYD-----PNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFV 76 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCC-----CCCCCEEEEEEEECCEEEEEEEEECCCCCCCCHHHHHHHCCCCCEEE
T ss_conf 9999989977899999997498998759-----95563057999999999999999289850122012554304587899
Q ss_pred EEEECCCCCCHHHHHHH----HHHH--HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCC-C
Q ss_conf 99983667402357778----9899--709941561233124433200022100001320001234740363110024-7
Q gi|254780787|r 459 LVLAADEEIMPQAIESI----NHAK--AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNN-L 531 (884)
Q Consensus 459 lvv~~~~g~~~qt~e~~----~~~~--~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 531 (884)
||.|+.+--.-+.+..| ...+ ..++|+|++-||+|+.... .+..+... .+...+ +..+..+||+++ .
T Consensus 77 lvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGNK~DL~~~r--~Vs~ee~~--~~a~~~--~~~f~E~SAk~~~~ 150 (165)
T cd04146 77 LVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYR--QVSTEEGE--KLASEL--GCLFFEVSAAEDYD 150 (165)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC--CCCHHHHH--HHHHHC--CCEEEEEECCCCCC
T ss_conf 9986588899999999999999984669995399844554521036--77999999--999981--99899975208782
Q ss_pred CCCCCCCCHH
Q ss_conf 7411221000
Q gi|254780787|r 532 NLDKLLDAIL 541 (884)
Q Consensus 532 ~~~~~~~~~~ 541 (884)
|+++++..+.
T Consensus 151 ~V~~~F~~l~ 160 (165)
T cd04146 151 GVHSVFHELC 160 (165)
T ss_pred CHHHHHHHHH
T ss_conf 6999999999
No 219
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.92 E-value=6.1e-09 Score=79.14 Aligned_cols=150 Identities=18% Similarity=0.244 Sum_probs=106.8
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHH---------HHHHH---
Q ss_conf 303898623685044677788642221001231000121499951784388885166157899---------98666---
Q gi|254780787|r 383 PPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYE---------MRARG--- 450 (884)
Q Consensus 383 ~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~---------~r~rg--- 450 (884)
.-.|...|.=+.|||||+-.|.+++..-|--=|.|-....-.+...+..++++|.||-=++++ ...|-
T Consensus 3 ~i~IALvGNPN~GKSTLFN~LTG~~q~VgNwPGvTVEkk~G~~~~~~~~~~ivDLPG~YSL~~~S~e~s~dE~Var~~ll 82 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL 82 (772)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 35699888998789999999868998357899764742389999689469999799778699999777730899999861
Q ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 42068059999836674023577789899709941561233124433200022100001320001234740363110024
Q gi|254780787|r 451 ARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNN 530 (884)
Q Consensus 451 ~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (884)
..-.|++|.||||.. ++-. .--.-.+.+.++|.|+|+|.+|.......+...+.++ +.+ .++.++++|..+
T Consensus 83 ~~~pDvvvnVvDAtn-LeRn-LyLt~QllElg~PvVvaLNM~D~A~~~Gi~ID~~~Ls-----~~L--GvPVV~~~A~~g 153 (772)
T PRK09554 83 SGDADLLINVVDASN-LERN-LYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALS-----ARL--GCPVIPLVSTRG 153 (772)
T ss_pred CCCCCEEEEEEECCC-HHHH-HHHHHHHHHCCCCEEEEEECHHHHHHCCCEECHHHHH-----HHH--CCCEEEEEECCC
T ss_conf 399989999801687-5442-8999999974999899987799898877932899999-----985--899899982788
Q ss_pred CCCCCCCCCHH
Q ss_conf 77411221000
Q gi|254780787|r 531 LNLDKLLDAIL 541 (884)
Q Consensus 531 ~~~~~~~~~~~ 541 (884)
+|+++|.+++.
T Consensus 154 ~Gi~eL~~ai~ 164 (772)
T PRK09554 154 RGIEALKLAID 164 (772)
T ss_pred CCHHHHHHHHH
T ss_conf 79999999999
No 220
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.91 E-value=6.3e-09 Score=79.00 Aligned_cols=146 Identities=17% Similarity=0.249 Sum_probs=96.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE----EEECC---CCEEEEEECCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 89862368504467778864222100123100012149----99517---843888851661578999866642068059
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY----QVAYQ---GKNITFLDTPGHAAFYEMRARGARVTDIAV 458 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~----~~~~~---~~~~~~iDtPGh~~f~~~r~rg~~~~d~~i 458 (884)
|+++|--..|||+|+-.+-.......- ...||+- .+... ...+.+.||+|.+.|..++..=-.-++.+|
T Consensus 5 ivllGd~~VGKTsL~~rf~~~~F~~~~----~~Tig~df~~k~i~i~dg~~v~l~IwDTaGqe~~~si~~~yyr~a~g~i 80 (211)
T cd04111 5 LIVIGDSTVGKSSLLKRFTEGRFAEVS----DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCC----CCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHCCEEE
T ss_conf 999999996199999999819999986----8720168899899977995999999979886345644287742124468
Q ss_pred EEEECCCCCCHHHHHHH-HHHHH----CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 99983667402357778-98997----09941561233124433200022100001320001234740363110024774
Q gi|254780787|r 459 LVLAADEEIMPQAIESI-NHAKA----ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNL 533 (884)
Q Consensus 459 lvv~~~~g~~~qt~e~~-~~~~~----~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (884)
||.|+.+----+.+..| ..++. ..+|+|++-||+|+... ..+..+..+ .+...++ ..++.+||++|.|+
T Consensus 81 lVyDvt~~~SF~~l~~W~~ei~~~~~~~~~~iiLVGNK~DL~~~--R~Vs~ee~~--~~A~~~~--~~f~EtSAK~g~nV 154 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQ--RQVTREEAE--KLAKDLG--MKYIETSARTGDNV 154 (211)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHH--CCCCHHHHH--HHHHHHC--CEEEEECCCCCCCH
T ss_conf 97147777999999999999999749888538988742312856--788999999--9999839--97999759998198
Q ss_pred CCCCCCHH
Q ss_conf 11221000
Q gi|254780787|r 534 DKLLDAIL 541 (884)
Q Consensus 534 ~~~~~~~~ 541 (884)
++++..+.
T Consensus 155 ~e~F~~la 162 (211)
T cd04111 155 EEAFELLT 162 (211)
T ss_pred HHHHHHHH
T ss_conf 99999999
No 221
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.91 E-value=1.2e-08 Score=77.07 Aligned_cols=146 Identities=21% Similarity=0.240 Sum_probs=95.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCE-E---EEECC---CCEEEEEECCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 8986236850446777886422210012310001214-9---99517---843888851661578999866642068059
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGA-Y---QVAYQ---GKNITFLDTPGHAAFYEMRARGARVTDIAV 458 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga-~---~~~~~---~~~~~~iDtPGh~~f~~~r~rg~~~~d~~i 458 (884)
|+++|--..|||+|+-.+....... ...+.||. | .+..+ ...+.+.||+|++.|..|+..=..-+|.+|
T Consensus 3 vvllGd~~VGKTSli~rf~~~~F~~----~y~~TiG~d~~~k~i~i~~~~~v~l~iwDtaGqe~~~~~~~~y~~~a~~~i 78 (215)
T cd04109 3 IVVLGDGAVGKTSLCRRFAKEGFGK----SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVF 78 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCC----CCCCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCEE
T ss_conf 9999999970999999997498988----778865578899999987994699999969985002378999997515137
Q ss_pred EEEECCCCCCHHHHHHHH-----HHHHCC--CCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 999836674023577789-----899709--9415612331244332000221000013200012347403631100247
Q gi|254780787|r 459 LVLAADEEIMPQAIESIN-----HAKAAD--VSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNL 531 (884)
Q Consensus 459 lvv~~~~g~~~qt~e~~~-----~~~~~~--~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (884)
||.|+.+=--=+-++.|. ...... .|+|++-||+|+.... .+..+ +...+...+ +..++.+||++|+
T Consensus 79 lVYDitn~~SF~~l~~W~~~i~~~~~~~~~~~~iiLVGNK~DL~~~R--~Vs~e--e~~~~A~~~--g~~f~E~SAktg~ 152 (215)
T cd04109 79 LVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNR--TVKDD--KHARFAQAN--GMESCLVSAKTGD 152 (215)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHC--CCCHH--HHHHHHHHC--CCEEEEEECCCCC
T ss_conf 74147867899989999999999850457785299997545428647--76999--999999982--9989998389994
Q ss_pred CCCCCCCCHH
Q ss_conf 7411221000
Q gi|254780787|r 532 NLDKLLDAIL 541 (884)
Q Consensus 532 ~~~~~~~~~~ 541 (884)
|+++++..+.
T Consensus 153 nV~e~F~~la 162 (215)
T cd04109 153 RVNLLFQQLA 162 (215)
T ss_pred CHHHHHHHHH
T ss_conf 9899999999
No 222
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.89 E-value=1.3e-08 Score=76.79 Aligned_cols=147 Identities=16% Similarity=0.232 Sum_probs=93.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE---EEECCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89862368504467778864222100123100012149---995178--4388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY---QVAYQG--KNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~---~~~~~~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
|+++|.-..|||+|+-++-.-.-...- ...|+.. .+..++ ..+.+.||+|++.|..||..--.-+|++|||
T Consensus 8 ivlvGd~~VGKTsLi~r~~~~~F~~~y----~pTi~~~~~~~~~i~~~~v~l~iwDTaGqe~f~~l~~~~y~~~~~~ilv 83 (182)
T cd04172 8 IVVVGDSQCGKTALLHVFAKDCFPENY----VPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC 83 (182)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCC----CCEEEEEEEEEEEECCEEEEEEEEECCCCHHCCCCCHHHHCCCCEEEEE
T ss_conf 999999998999999999839999986----8735322689999999999999996898620122125551278789999
Q ss_pred EECCCCCCHHHHHHH-----HHHHH--CCCCEEEECCCCCCCCCCCCHHHHHHHCC---------CCCCCCCCCCCEEEE
Q ss_conf 983667402357778-----98997--09941561233124433200022100001---------320001234740363
Q gi|254780787|r 461 LAADEEIMPQAIESI-----NHAKA--ADVSIIVAINKIDKLGADPQKVRMSLLKH---------DVFVESMGGDILDVE 524 (884)
Q Consensus 461 v~~~~g~~~qt~e~~-----~~~~~--~~~p~iva~nk~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 524 (884)
.|+.+ +.+.+++ ..++. -++|+|++-||+|+-..... ...+..+ +......-+...++.
T Consensus 84 ydit~---~~Sf~~v~~~W~~ei~~~~~~~~iiLVGnK~DLr~~~~~--~~~l~~~~~~~Vs~eeg~~~A~~~g~~~y~E 158 (182)
T cd04172 84 FDISR---PETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTT--LVELSNHRQTPVSYDQGANMAKQIGAATYIE 158 (182)
T ss_pred EECCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHH--HHHHHHCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 64897---788999999999999986879988999617101244145--6677645677869999999999769979999
Q ss_pred EEECCCCC-CCCCCCCHH
Q ss_conf 11002477-411221000
Q gi|254780787|r 525 ISAKNNLN-LDKLLDAIL 541 (884)
Q Consensus 525 ~~~~~~~~-~~~~~~~~~ 541 (884)
+||+++++ ++++++...
T Consensus 159 tSAk~~~n~V~e~F~~a~ 176 (182)
T cd04172 159 CSALQSENSVRDIFHVAT 176 (182)
T ss_pred CCCCCCCCCHHHHHHHHH
T ss_conf 170789959899999999
No 223
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.89 E-value=1e-08 Score=77.61 Aligned_cols=150 Identities=19% Similarity=0.182 Sum_probs=92.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHC--C-CCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 89862368504467778864222100--1-23100012149995178438888516615789998666420680599998
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKG--E-IGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLA 462 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~--e-~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~ 462 (884)
|++||----|||+|+-.+........ . .+|..-.--...+......+.++||+|.+.|......- ..+|++|||-|
T Consensus 3 VvllGd~gVGKTSLi~rf~~~~f~~~~y~~t~~~d~~~k~v~vd~~~~~l~i~Dt~g~e~~~~~~~~~-~~ada~ilVYd 81 (221)
T cd04148 3 VVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMWTEDSCMQ-YQGDAFVVVYS 81 (221)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHH-HCCCEEEEEEE
T ss_conf 99999899709999999981986986678744248899999999999899999898731266665653-06868999996
Q ss_pred CCCCCCHHHHHHH-HHHHH----CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 3667402357778-98997----099415612331244332000221000013200012347403631100247741122
Q gi|254780787|r 463 ADEEIMPQAIESI-NHAKA----ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLL 537 (884)
Q Consensus 463 ~~~g~~~qt~e~~-~~~~~----~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (884)
+.+=--=+-++-| ..++. .++|+|++-||+|+... ..+-.+-. ..+...+ +..++.+||+++.|+++++
T Consensus 82 vtdr~SF~~~~~~~~~l~~~~~~~~~piILVGNK~DL~~~--R~Vs~eEg--~~~A~~~--~~~F~EtSAk~~~NV~elF 155 (221)
T cd04148 82 VTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARS--REVSVQEG--RACAVVF--DCKFIETSAGLQHNVDELL 155 (221)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHH--CCCCHHHH--HHHHHHC--CCEEEECCCCCCCCHHHHH
T ss_conf 4667788889999999998648999519998535666863--89999999--9999985--9989994579994989999
Q ss_pred CCHHC
Q ss_conf 10000
Q gi|254780787|r 538 DAILL 542 (884)
Q Consensus 538 ~~~~~ 542 (884)
+.++-
T Consensus 156 ~~lvr 160 (221)
T cd04148 156 EGIVR 160 (221)
T ss_pred HHHHH
T ss_conf 99999
No 224
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.87 E-value=2.5e-08 Score=74.98 Aligned_cols=152 Identities=24% Similarity=0.335 Sum_probs=109.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHH-----HHHHH---HCCC
Q ss_conf 038986236850446777886422210012310001214999517843888851661578999-----86664---2068
Q gi|254780787|r 384 PVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEM-----RARGA---RVTD 455 (884)
Q Consensus 384 pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~-----r~rg~---~~~d 455 (884)
..|++.|.=+.|||||+-+|.++|..=|---|.|-...--.+...+..++++|.||-=+++.- ..|-. .-.|
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D 83 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPD 83 (653)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEECCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 43898569985489999998566746547898069987889973585489986897565888992089999998638998
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 05999983667402357778989970994156123312443320002210000132000123474036311002477411
Q gi|254780787|r 456 IAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDK 535 (884)
Q Consensus 456 ~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (884)
.+|-||||.. ++-.-.=. -.+.+.+.|.|+|+|.+|......-+...+.++ +.. .++.++++|+.|.|+++
T Consensus 84 ~ivnVvDA~n-LeRnLylt-lQLlE~g~p~ilaLNm~D~A~~~Gi~Id~~~L~-----~~L--GvPVv~tvA~~g~G~~~ 154 (653)
T COG0370 84 LIVNVVDATN-LERNLYLT-LQLLELGIPMILALNMIDEAKKRGIRIDIEKLS-----KLL--GVPVVPTVAKRGEGLEE 154 (653)
T ss_pred EEEEEECCCH-HHHHHHHH-HHHHHCCCCEEEEECCHHHHHHCCCCCCHHHHH-----HHH--CCCEEEEEECCCCCHHH
T ss_conf 8999602323-77778999-999985998599961275688649712699999-----986--89889987305889799
Q ss_pred CCCCHHCCC
Q ss_conf 221000023
Q gi|254780787|r 536 LLDAILLQA 544 (884)
Q Consensus 536 ~~~~~~~~~ 544 (884)
++..+....
T Consensus 155 l~~~i~~~~ 163 (653)
T COG0370 155 LKRAIIELA 163 (653)
T ss_pred HHHHHHHHC
T ss_conf 999998743
No 225
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.86 E-value=1.2e-08 Score=77.00 Aligned_cols=141 Identities=18% Similarity=0.221 Sum_probs=91.7
Q ss_pred EECCCCCHHHHHHHHHHHHH-HHCCCCCCEECCCE--EEEEC--CCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 62368504467778864222-10012310001214--99951--784388885166157899986664206805999983
Q gi|254780787|r 389 MGHVDHGKTSLLDAIRKADV-AKGEIGGITQHIGA--YQVAY--QGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 389 ~ghvd~GKt~lld~~r~~~~-~~~e~ggitq~iga--~~~~~--~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
+|.-..|||+|+-+..+-.- ....+ |..+.. ..+.. ....+.+.||.|++.|..|+..=-.-++.+|||.|+
T Consensus 1 vGD~gVGKTsli~R~~~~~F~~~y~p---TiGvd~~~~~~~~~~~~i~l~iWDTAGqE~f~sl~~~yyr~a~~~IlvfDv 77 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVA---TLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDV 77 (200)
T ss_pred CCCCCCCHHHHHHHHHCCCCCCCCCC---CEEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCHHHCCCCCEEEEEEEC
T ss_conf 98988789999999940999999788---714898999999899899999998988700011026550578788999635
Q ss_pred CCCCCHHHHHHHH-HHH--HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCH
Q ss_conf 6674023577789-899--7099415612331244332000221000013200012347403631100247741122100
Q gi|254780787|r 464 DEEIMPQAIESIN-HAK--AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAI 540 (884)
Q Consensus 464 ~~g~~~qt~e~~~-~~~--~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (884)
.+=-.-.-+..|. .+. ..++|+|++-||+|+.. .++..+- ..+.... +..+..+||+++.|+++++..+
T Consensus 78 t~~~SF~~l~~W~~~l~~~~~~ipiiLvGNK~DL~~---r~V~~e~---~~~a~~~--~~~y~EtSAKt~~Nv~e~F~~L 149 (200)
T smart00176 78 TARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKD---RKVKAKS---ITFHRKK--NLQYYDISAKSNYNFEKPFLWL 149 (200)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC---CCCCHHH---HHHHHHC--CCCEEEEECCCCCCHHHHHHHH
T ss_conf 877899989999999998579998899998875740---4365999---9999987--9978983004696979999999
No 226
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.83 E-value=2.7e-08 Score=74.74 Aligned_cols=149 Identities=17% Similarity=0.224 Sum_probs=96.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCE-----EEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 8986236850446777886422210012310001214-----99951784388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGA-----YQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga-----~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
|.++|.-..|||+||-.+-.-...... ...|+. +.+......+.+.||-|++.|..||.---.-+|++|||
T Consensus 16 iVlVGD~~VGKTsLl~~~~~~~F~~~y----~pTv~~~~~~~i~v~~~~v~L~lWDTAGqE~y~~lr~~yY~~a~~~ll~ 91 (232)
T cd04174 16 LVLVGDVQCGKTAMLQVLAKDCYPETY----VPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCC----CCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCHHHHHHHCCCCEEEEE
T ss_conf 999998998999999999739899985----8836888899999999999999983899701003679974068789999
Q ss_pred EECCCCCCHHHHHHH----H-HHH--HCCCCEEEECCCCCCCCCCCCHHHHHHHCCC---------CCCCCCCCCCEEEE
Q ss_conf 983667402357778----9-899--7099415612331244332000221000013---------20001234740363
Q gi|254780787|r 461 LAADEEIMPQAIESI----N-HAK--AADVSIIVAINKIDKLGADPQKVRMSLLKHD---------VFVESMGGDILDVE 524 (884)
Q Consensus 461 v~~~~g~~~qt~e~~----~-~~~--~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 524 (884)
.|+.+ |+|.+++ . -++ .-++|+|++-||+|+-.. .. ...++.... .......|...++.
T Consensus 92 Fdvt~---~~Sfe~~~~~Wi~Ei~~~~p~~piiLVGnK~DLr~d-~~-~l~~L~~~~~~pVt~eeg~~~Ak~iga~~Y~E 166 (232)
T cd04174 92 FDISR---PETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTD-LS-TLMELSNQKQAPISYEQGCALAKQLGAEVYLE 166 (232)
T ss_pred EECCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHCCCC-HH-HHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 96898---799998999999999986899978999876021547-57-78899756888757999999999749978998
Q ss_pred EEECCCC-CCCCCCCCHHCC
Q ss_conf 1100247-741122100002
Q gi|254780787|r 525 ISAKNNL-NLDKLLDAILLQ 543 (884)
Q Consensus 525 ~~~~~~~-~~~~~~~~~~~~ 543 (884)
+||++|+ ++++.+....+.
T Consensus 167 ~SA~tge~~v~~vF~~a~~~ 186 (232)
T cd04174 167 CSAFTSEKSIHSIFRSASLL 186 (232)
T ss_pred CCCCCCCCCHHHHHHHHHHH
T ss_conf 75686662599999999999
No 227
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.82 E-value=4.5e-08 Score=73.16 Aligned_cols=147 Identities=15% Similarity=0.262 Sum_probs=95.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE---EEECC--CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89862368504467778864222100123100012149---99517--84388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY---QVAYQ--GKNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~---~~~~~--~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
|.++|.-.-|||+||-.+-.-.....- .-.|+.. .+..+ ...+.+.||.|.+.|.+||.---.-+|++|||
T Consensus 4 iVlvGD~~VGKTsLl~~f~~~~F~~~y----~pTi~~~~~~~~~vd~~~v~L~iWDTAGqE~y~~lr~~yyr~a~~~llv 79 (222)
T cd04173 4 IVVVGDAECGKTALLQVFAKDAYPGSY----VPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCC----CCCEEEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEE
T ss_conf 999898998989999999639999984----7845877899999999999999976888503455678750369899999
Q ss_pred EECCCCCCHHHHHHH----H-HHHH--CCCCEEEECCCCCCCCCCCCHHHHHHHCC---------CCCCCCCCCCCEEEE
Q ss_conf 983667402357778----9-8997--09941561233124433200022100001---------320001234740363
Q gi|254780787|r 461 LAADEEIMPQAIESI----N-HAKA--ADVSIIVAINKIDKLGADPQKVRMSLLKH---------DVFVESMGGDILDVE 524 (884)
Q Consensus 461 v~~~~g~~~qt~e~~----~-~~~~--~~~p~iva~nk~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 524 (884)
.|+.+ ++|.+++ . .++. -++|+|++-||+|+-.. .. ...++... +.......|...++.
T Consensus 80 fdit~---~~SF~~v~~~W~~ei~~~~p~~piiLVGnK~DLR~d-~~-~~~el~~~~~~pVt~eeg~~lA~~~ga~~y~E 154 (222)
T cd04173 80 FDISR---PETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTD-LA-TLRELSKQRLIPVTHEQGTVLAKQVGAVSYVE 154 (222)
T ss_pred EECCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC-HH-HHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 83897---788999999999999985899978999587424568-78-89999855788878999999999769988998
Q ss_pred EEECCCCC-CCCCCCCHH
Q ss_conf 11002477-411221000
Q gi|254780787|r 525 ISAKNNLN-LDKLLDAIL 541 (884)
Q Consensus 525 ~~~~~~~~-~~~~~~~~~ 541 (884)
+||+++++ +++.++...
T Consensus 155 cSAk~~~n~V~evF~~a~ 172 (222)
T cd04173 155 CSSRSSERSVRDVFHVAT 172 (222)
T ss_pred CCCCCCCCCHHHHHHHHH
T ss_conf 884868749899999999
No 228
>pfam08477 Miro Miro-like protein. Mitochondrial Rho proteins (Miro-1 and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis.
Probab=98.79 E-value=6.8e-08 Score=71.96 Aligned_cols=108 Identities=20% Similarity=0.280 Sum_probs=76.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHC---CCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 89862368504467778864222100---123100012149995178438888516615789998666420680599998
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKG---EIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLA 462 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~---e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~ 462 (884)
|.|+|-=..|||+|+-.+........ +..+.+-.+-..........+.|.||+|++.|..++.+-..-+|++|||.|
T Consensus 2 ivvvG~~~vGKTSLi~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~~ilvyd 81 (118)
T pfam08477 2 VVVIGDKGSGKSSLLSQLVGGEFPPEIPEEIQGDTLAVDTLEVDGDTELLHIWDFGGREELKFEHIIFMKTADAILLVYD 81 (118)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 99999899789999999983988876667877776888999999928999999899967776666542258746789997
Q ss_pred CCCCCCHHHHHH----HHHHHH--CCCCEEEECCCCC
Q ss_conf 366740235777----898997--0994156123312
Q gi|254780787|r 463 ADEEIMPQAIES----INHAKA--ADVSIIVAINKID 493 (884)
Q Consensus 463 ~~~g~~~qt~e~----~~~~~~--~~~p~iva~nk~d 493 (884)
+.+----+.++. |..++. .++|+|++-||+|
T Consensus 82 it~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGnK~D 118 (118)
T pfam08477 82 LTDRESLNRVSRLIAWLPHLRKLGKKIPVILVGNKFD 118 (118)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 9987899999999999999982099998899996859
No 229
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=1.2e-07 Score=70.31 Aligned_cols=105 Identities=23% Similarity=0.410 Sum_probs=81.7
Q ss_pred CCCC-EEEEEECCCCCHHHHHHHHH--HHHHHHCC-CCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCC
Q ss_conf 5530-38986236850446777886--42221001-23100012149995178438888516615789998666420680
Q gi|254780787|r 381 IRPP-VVTIMGHVDHGKTSLLDAIR--KADVAKGE-IGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDI 456 (884)
Q Consensus 381 ~R~p-vv~v~ghvd~GKt~lld~~r--~~~~~~~e-~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~ 456 (884)
.-|| ||+|||--.+|||||+-.|- -|...-.+ -|.||- +.....++||+.|| .+.+.|. --+.++|+
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTv------vsgK~RRiTflEcp--~Dl~~mi-DvaKIaDL 136 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITV------VSGKTRRITFLECP--SDLHQMI-DVAKIADL 136 (1077)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEE------EECCEEEEEEEECH--HHHHHHH-HHHHHHHE
T ss_conf 899758996369988746899999999877542036786478------61563578988671--7888887-68875213
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EECCCCCC
Q ss_conf 599998366740235777898997099415-61233124
Q gi|254780787|r 457 AVLVLAADEEIMPQAIESINHAKAADVSII-VAINKIDK 494 (884)
Q Consensus 457 ~ilvv~~~~g~~~qt~e~~~~~~~~~~p~i-va~nk~d~ 494 (884)
++|+||++-|++-.|.|-++++-.++.|-| -+++-+|.
T Consensus 137 VlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDl 175 (1077)
T COG5192 137 VLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDL 175 (1077)
T ss_pred EEEEECCCCCCEEHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 578863666704248899999866489724788862113
No 230
>PRK12298 obgE GTPase ObgE; Reviewed
Probab=98.76 E-value=9.6e-08 Score=70.94 Aligned_cols=145 Identities=20% Similarity=0.281 Sum_probs=101.3
Q ss_pred EEEEECCCCCHHHHHHHHHH--HHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCH-----H------HHHHHHHHHHH
Q ss_conf 89862368504467778864--22210012310001214999517843888851661-----5------78999866642
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRK--ADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGH-----A------AFYEMRARGAR 452 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~--~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh-----~------~f~~~r~rg~~ 452 (884)
|.++|-=+.||+|||-+|.+ ..|++...-.++=++|...+. +...+++-|.||- + .|..-. .
T Consensus 162 VGLvG~PNAGKSTll~~iS~AkPKIAdYpFTTL~PnLGvV~~~-~~~~fviADIPGLIeGAs~G~GLG~~FLrHi----e 236 (380)
T PRK12298 162 VGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD-DERSFVIADIPGLIEGAAEGAGLGIRFLKHL----E 236 (380)
T ss_pred CCEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEC-CCCEEEEEECCCCCCCCCCCCCHHHHHHHHH----H
T ss_conf 5146369886108998855589754788753368746799946-9866999877755577555877289999998----7
Q ss_pred CCCCEEEEEECC--CCCCHHHHHHHHH----HH-----HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCE
Q ss_conf 068059999836--6740235777898----99-----709941561233124433200022100001320001234740
Q gi|254780787|r 453 VTDIAVLVLAAD--EEIMPQAIESINH----AK-----AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDIL 521 (884)
Q Consensus 453 ~~d~~ilvv~~~--~g~~~qt~e~~~~----~~-----~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (884)
=|.+.+.|||+. ++-.| .+.+.. ++ -.+-|.||++||||++..... .+.... +.+..+....
T Consensus 237 Rt~~LlhviD~s~~~~~dp--~~~~~~i~~EL~~Y~~~L~~kp~iiv~NK~Dl~~~~e~---~~~~~~--~~~~~~~~~~ 309 (380)
T PRK12298 237 RCRVLLHLIDIAPIDGSDP--VENARIIVNELEKYSPKLAEKPRWLVFNKIDLLDEEEA---EERAKE--IVEALGWEGP 309 (380)
T ss_pred HHCEEEEEEECCCCCCCCH--HHHHHHHHHHHHHHCHHHCCCCEEEEEECCCCCCHHHH---HHHHHH--HHHHCCCCCC
T ss_conf 5358999996887775199--99999999999985976605987999988548997999---999999--9997088888
Q ss_pred EEEEEECCCCCCCCCCCCHHC
Q ss_conf 363110024774112210000
Q gi|254780787|r 522 DVEISAKNNLNLDKLLDAILL 542 (884)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~ 542 (884)
..++||++++|++.|+..+.-
T Consensus 310 v~~ISA~tgeG~~~L~~~i~~ 330 (380)
T PRK12298 310 VYLISAASGEGTKELCWDLMT 330 (380)
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 799978768799999999999
No 231
>PRK12297 obgE GTPase ObgE; Reviewed
Probab=98.71 E-value=1.2e-07 Score=70.21 Aligned_cols=144 Identities=24% Similarity=0.326 Sum_probs=99.1
Q ss_pred EEEEEECCCCCHHHHHHHHHH--HHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCH-----------HHHHHHHHHHH
Q ss_conf 389862368504467778864--22210012310001214999517843888851661-----------57899986664
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRK--ADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGH-----------AAFYEMRARGA 451 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~--~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh-----------~~f~~~r~rg~ 451 (884)
=|.++|-=+.||+|||-+|.+ ..++....-.++=++|...+. +...+++.|.||- -.|..- .
T Consensus 160 DVGLvG~PNaGKSTll~~is~A~pkIa~YpFTTl~P~lGvv~~~-~~~~~~iADiPGLIeGA~~g~GLG~~FLrH----i 234 (429)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADLPGLIEGASEGVGLGHQFLRH----I 234 (429)
T ss_pred CCCEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEC-CCCEEEEEECCCCCCCCCCCCCCCHHHHHH----H
T ss_conf 76336479984578998875489755787740257666689856-986699962674567744688866888887----6
Q ss_pred HCCCCEEEEEECC--CCCCH-HHHHHHH-HH-----HHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEE
Q ss_conf 2068059999836--67402-3577789-89-----97099415612331244332000221000013200012347403
Q gi|254780787|r 452 RVTDIAVLVLAAD--EEIMP-QAIESIN-HA-----KAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILD 522 (884)
Q Consensus 452 ~~~d~~ilvv~~~--~g~~~-qt~e~~~-~~-----~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (884)
.=|.+.+.|||+. ++-.| +..+.|+ -+ .-..-|.||++||||.+.+.. ....+.... ......
T Consensus 235 eR~~~L~hviD~s~~~~~dp~~d~~~i~~EL~~y~~~L~~kp~ivv~NK~Dl~~~~~--~~~~~~~~~------~~~~~i 306 (429)
T PRK12297 235 ERTRVIVHVIDMSGSEGRDPIEDYETINKELKKYNLRLLERPQIIVANKMDLPEAEE--NLEEFKEKL------AKGKKV 306 (429)
T ss_pred HHCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCHHHHCCCEEEEEECCCCCCHHH--HHHHHHHHH------HCCCCE
T ss_conf 624679999978787777989999999999998689872696699997645857699--999999975------346978
Q ss_pred EEEEECCCCCCCCCCCCHH
Q ss_conf 6311002477411221000
Q gi|254780787|r 523 VEISAKNNLNLDKLLDAIL 541 (884)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~ 541 (884)
+++||.+++|+++|+..+.
T Consensus 307 ~~iSa~t~egl~~l~~~i~ 325 (429)
T PRK12297 307 FPISALTKQGLDELLYAIA 325 (429)
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9996844519999999999
No 232
>KOG1191 consensus
Probab=98.70 E-value=1.5e-07 Score=69.55 Aligned_cols=162 Identities=25% Similarity=0.279 Sum_probs=110.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH--HHHCCCCCCEECCCEEEEECCCCEEEEEECCCH--------HHHHHHHHHH-
Q ss_conf 53038986236850446777886422--210012310001214999517843888851661--------5789998666-
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKAD--VAKGEIGGITQHIGAYQVAYQGKNITFLDTPGH--------AAFYEMRARG- 450 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~~--~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh--------~~f~~~r~rg- 450 (884)
..+=+.|+|-=+.||+|||-.|-+.. +..-++ |.|-.-=-..|...+.+++++||-|- |+.+-+|++-
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~-GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVP-GTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCC-CCCHHHHEEEEECCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 5772899769987788999887507744767899-964100122763087589997341310026870677768999988
Q ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHH------------CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCC-
Q ss_conf 420680599998366740235777898997------------0994156123312443320002210000132000123-
Q gi|254780787|r 451 ARVTDIAVLVLAADEEIMPQAIESINHAKA------------ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMG- 517 (884)
Q Consensus 451 ~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~------------~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~- 517 (884)
+..+|+++|||||+++.-.+-......+.. .+-|.|+++||+|.....++.....+. ..+....
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~---~~~~~~~~ 422 (531)
T KOG1191 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVV---YPSAEGRS 422 (531)
T ss_pred HHHCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCEEEEECHHHCCCCCCCCCCCCEE---CCCCCCCC
T ss_conf 765477999963300333253289999887425558970444346237886102215766445677400---23533576
Q ss_pred CCCEEEEEEECCCCCCCCCCCCHHCCCCCC
Q ss_conf 474036311002477411221000023333
Q gi|254780787|r 518 GDILDVEISAKNNLNLDKLLDAILLQAEML 547 (884)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (884)
.....+.+|+++++++..|.++++.....+
T Consensus 423 ~~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191 423 VFPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_conf 663378864120044899999999999875
No 233
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.65 E-value=1.3e-07 Score=70.00 Aligned_cols=144 Identities=14% Similarity=0.217 Sum_probs=89.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEE--ECC--CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8986236850446777886422210012310001214999--517--843888851661578999866642068059999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQV--AYQ--GKNITFLDTPGHAAFYEMRARGARVTDIAVLVL 461 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~--~~~--~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv 461 (884)
|++||.-.-|||+|+-............ |+ .|.|.- ..+ ...+.+.||.|.+.|...| .+|.+|||.
T Consensus 3 ivllGd~~VGKTsl~~Rf~~~~F~~~~~---pt-~~~~~~~~~vdg~~~~l~i~DTaG~~~~~~~~-----~ada~ilVy 73 (158)
T cd04103 3 LGIVGNLQSGKSALVHRYLTGSYVQLES---PE-GGRFKKEVLVDGQSHLLLIRDEGGAPDAQFAS-----WVDAVIFVF 73 (158)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCC---CC-CCEEEEEEEECCEEEEEEEEECCCCCCHHHHC-----CCCEEEEEE
T ss_conf 9999969987999999998094787444---66-44179999999999999999589983433321-----499899999
Q ss_pred ECCCCCCHHHHHHHH-HHHH----CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 836674023577789-8997----09941561233124433200022100001320001234740363110024774112
Q gi|254780787|r 462 AADEEIMPQAIESIN-HAKA----ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKL 536 (884)
Q Consensus 462 ~~~~g~~~qt~e~~~-~~~~----~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (884)
|+.+=--=+.+..|. .+.. ..+|+|++-||.|....+...+..+-... ...++ ++..+..+||+++.|++++
T Consensus 74 dit~~~SF~~v~~~~~~i~~~~~~~~ipiilvGnK~dl~~~~~r~V~~~e~~~--~a~~~-~~~~f~EtSAk~~~NV~~~ 150 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQ--LCADM-KRCSYYETCATYGLNVERV 150 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEECCHHHHHH--HHHHC-CCCEEEEEECCCCCCHHHH
T ss_conf 88988899999999999998559789968999877003657761479999999--99856-9988999017999598999
Q ss_pred CCCHH
Q ss_conf 21000
Q gi|254780787|r 537 LDAIL 541 (884)
Q Consensus 537 ~~~~~ 541 (884)
+..+.
T Consensus 151 F~~~~ 155 (158)
T cd04103 151 FQEAA 155 (158)
T ss_pred HHHHH
T ss_conf 99999
No 234
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.63 E-value=2.9e-07 Score=67.64 Aligned_cols=153 Identities=24% Similarity=0.293 Sum_probs=93.2
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHH--HHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHH--HH--HHHHH---
Q ss_conf 1255303898623685044677788642--221001231000121499951784388885166157--89--99866---
Q gi|254780787|r 379 LDIRPPVVTIMGHVDHGKTSLLDAIRKA--DVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAA--FY--EMRAR--- 449 (884)
Q Consensus 379 ~~~R~pvv~v~ghvd~GKt~lld~~r~~--~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~--f~--~~r~r--- 449 (884)
..+=.|-|.|-|+=+-||+||+-+|.+. .||..=.-.--.|||.|. .+..++.+|||||-=+ |. |...+
T Consensus 164 Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe--~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi 241 (346)
T COG1084 164 IDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFE--RGYLRIQVIDTPGLLDRPLEERNEIERQAI 241 (346)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEE--CCCCEEEEECCCCCCCCCHHHHCHHHHHHH
T ss_conf 799997389856998758999988754897667888533654676550--487058984288645788577368999999
Q ss_pred --HHHCCCCEEEEEECCCCCCHHHHHHHHHH----HHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEE
Q ss_conf --64206805999983667402357778989----970994156123312443320002210000132000123474036
Q gi|254780787|r 450 --GARVTDIAVLVLAADEEIMPQAIESINHA----KAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDV 523 (884)
Q Consensus 450 --g~~~~d~~ilvv~~~~g~~~qt~e~~~~~----~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (884)
-..+.++++.++|.-+-.-.--.+-+.|+ ..++.|+|+++||+|..+-+.......... ..+ .....
T Consensus 242 ~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~------~~~-~~~~~ 314 (346)
T COG1084 242 LALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASVL------EEG-GEEPL 314 (346)
T ss_pred HHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH------HHC-CCCCC
T ss_conf 99997428589997685002899999999999999853887699974101246667899999987------632-65543
Q ss_pred EEEECCCCCCCCCCCCH
Q ss_conf 31100247741122100
Q gi|254780787|r 524 EISAKNNLNLDKLLDAI 540 (884)
Q Consensus 524 ~~~~~~~~~~~~~~~~~ 540 (884)
.+++..+.+.+.+-+.+
T Consensus 315 ~~~~~~~~~~d~~~~~v 331 (346)
T COG1084 315 KISATKGCGLDKLREEV 331 (346)
T ss_pred CEEEEEHHHHHHHHHHH
T ss_conf 13543000178899999
No 235
>KOG2486 consensus
Probab=98.62 E-value=4e-07 Score=66.66 Aligned_cols=156 Identities=24% Similarity=0.283 Sum_probs=108.6
Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHH-HHHHHHCCC--CCCEECCCEEEEECCCCEEEEEECCC-------H---HHHHHH
Q ss_conf 2553038986236850446777886-422210012--31000121499951784388885166-------1---578999
Q gi|254780787|r 380 DIRPPVVTIMGHVDHGKTSLLDAIR-KADVAKGEI--GGITQHIGAYQVAYQGKNITFLDTPG-------H---AAFYEM 446 (884)
Q Consensus 380 ~~R~pvv~v~ghvd~GKt~lld~~r-~~~~~~~e~--ggitq~iga~~~~~~~~~~~~iDtPG-------h---~~f~~~ 446 (884)
+-++|=+.++|.-+-||.+||+.+- .-+++..+. -|-||-|-.|.+ +...+.+|-|| | +.|.++
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v---~~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV---GKSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC---CCEEEEEECCCCCCCCCCCCCCCHHHHH
T ss_conf 7888526662477622788876543214556403788765113200120---5548998468865456785574147675
Q ss_pred -----HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCC-----CCCCCC
Q ss_conf -----8666420680599998366740235777898997099415612331244332000221000013-----200012
Q gi|254780787|r 447 -----RARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHD-----VFVESM 516 (884)
Q Consensus 447 -----r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~-----~~~~~~ 516 (884)
-.|-.-++ +.|.||+.-+++|--.++|..+-..++|+.+++||||+...-..--....+... +.+.-+
T Consensus 210 t~~Y~leR~nLv~--~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f 287 (320)
T KOG2486 210 TKSYLLERENLVR--VFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVF 287 (320)
T ss_pred HHHHHHHHHHHHE--EEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHCCCCCCCCCCCCEEEHHHCCCCCE
T ss_conf 7888872653311--56663036788998769998875249973886302445553022355754001210200150004
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCH
Q ss_conf 347403631100247741122100
Q gi|254780787|r 517 GGDILDVEISAKNNLNLDKLLDAI 540 (884)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~ 540 (884)
-...+.+-+|+++..|++.|+--+
T Consensus 288 ~~~~Pw~~~Ssvt~~Grd~Ll~~i 311 (320)
T KOG2486 288 LVDLPWIYVSSVTSLGRDLLLLHI 311 (320)
T ss_pred ECCCCCEEEECCCCCCCEEEEEEH
T ss_conf 115870132043425720011016
No 236
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.62 E-value=7.6e-08 Score=71.64 Aligned_cols=81 Identities=37% Similarity=0.559 Sum_probs=73.2
Q ss_pred EEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHCCHHHHHHHCCCEEEEEEECCEEEEECCE
Q ss_conf 89997887338987078999852178469807996699899822625766446006687279766999728411005898
Q gi|254780787|r 792 NAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRFKDEVSEVHAGQDCGMAFEKYDNIQAGDM 871 (884)
Q Consensus 792 ~a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~~~~~~~gD~ 871 (884)
.+.|..+|..++.|.+++|+|.+|+|++|..+.+.+.+.. +.++|.+|++++..+.++..|+.||+.+.++.+++.||+
T Consensus 2 ~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~-~~~~v~~i~~~~~~~~~~~aG~~~~~~~~~~~~~~~gd~ 80 (83)
T cd01342 2 RALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGG-VKGKVKSLKRFKGEVDEAVAGDIVGIVLKDKDDIKIGDT 80 (83)
T ss_pred EEEEEEEEEECCCEEEEEEEECCCEEECCCEEEEECCCCC-EEEEEEEEEEECCCCCEECCCCEEEEEECCHHHCCCCCE
T ss_conf 1299999991896899999993429989999999709963-899998999922377798489899999716353479989
Q ss_pred EE
Q ss_conf 99
Q gi|254780787|r 872 IE 873 (884)
Q Consensus 872 i~ 873 (884)
|.
T Consensus 81 ~~ 82 (83)
T cd01342 81 LT 82 (83)
T ss_pred EC
T ss_conf 82
No 237
>PRK12296 obgE GTPase ObgE; Reviewed
Probab=98.61 E-value=5.2e-07 Score=65.91 Aligned_cols=142 Identities=23% Similarity=0.290 Sum_probs=98.3
Q ss_pred EEEEECCCCCHHHHHHHHHH--HHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCH-----------HHHHHHHHHHHH
Q ss_conf 89862368504467778864--22210012310001214999517843888851661-----------578999866642
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRK--ADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGH-----------AAFYEMRARGAR 452 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~--~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh-----------~~f~~~r~rg~~ 452 (884)
|.++|-=+.||+|||-+|.+ ..++....-.++=++|..++. ...+++-|-||- -.|..- ..
T Consensus 162 VGLvG~PNaGKSTLl~~iS~AkpkIA~YpFTTL~PnLGvv~~~--d~~f~iADiPGLIeGAs~g~GLG~~FLRH----ie 235 (495)
T PRK12296 162 VGLVGFPSAGKSSLISAISAAKPKIADYPFTTLVPNLGVVSAG--DHTFTVADVPGLIPGASEGRGLGLDFLRH----IE 235 (495)
T ss_pred CCEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECC--CCEEEEEECCCCCCCCCCCCCCHHHHHHH----HH
T ss_conf 1101189996158998875488765787755457546789707--95289985664346500389843999998----75
Q ss_pred CCCCEEEEEECCC---CCCH-HHHHHHH-HHHHC--------------CCCEEEECCCCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf 0680599998366---7402-3577789-89970--------------99415612331244332000221000013200
Q gi|254780787|r 453 VTDIAVLVLAADE---EIMP-QAIESIN-HAKAA--------------DVSIIVAINKIDKLGADPQKVRMSLLKHDVFV 513 (884)
Q Consensus 453 ~~d~~ilvv~~~~---g~~~-qt~e~~~-~~~~~--------------~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~ 513 (884)
=|-+.+.|||+.- |-.| +-++.|+ -|..+ .-|.|||+||||.+.+.. ..++... ..
T Consensus 236 R~~vL~hviD~~~~e~~rDP~~d~~~I~~EL~~Y~~~l~~~~~~~~L~erpqIVvlNKiDlp~a~e---~~e~~~~--~l 310 (495)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPISDIDALEAELAAYTPTLQGDAGLGDLAERPRLVVLNKIDVPDARE---LAEFVRP--EL 310 (495)
T ss_pred HCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCEEEEEECCCCCCHHH---HHHHHHH--HH
T ss_conf 254799999688766678969999999999997191430443323210196599996656757699---9999999--99
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCH
Q ss_conf 012347403631100247741122100
Q gi|254780787|r 514 ESMGGDILDVEISAKNNLNLDKLLDAI 540 (884)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (884)
+.. ....+++|+.+++|+++|+..+
T Consensus 311 ~~~--g~~Vf~ISA~t~eGl~eL~~~l 335 (495)
T PRK12296 311 EER--GWPVFEVSTVTREGLRPLSFAL 335 (495)
T ss_pred HHC--CCCEEEEECCCCCCHHHHHHHH
T ss_conf 874--9957998641003899999999
No 238
>KOG1423 consensus
Probab=98.60 E-value=8.6e-07 Score=64.40 Aligned_cols=177 Identities=19% Similarity=0.186 Sum_probs=111.0
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC--CCCCEECCCEEEEECCCCEEEEEECCCHHH------------HH
Q ss_conf 1255303898623685044677788642221001--231000121499951784388885166157------------89
Q gi|254780787|r 379 LDIRPPVVTIMGHVDHGKTSLLDAIRKADVAKGE--IGGITQHIGAYQVAYQGKNITFLDTPGHAA------------FY 444 (884)
Q Consensus 379 ~~~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e--~ggitq~iga~~~~~~~~~~~~iDtPGh~~------------f~ 444 (884)
...|+--|.|+|-=+.||+||...+-+..|..-- ....|++|-+. +..+...+.|.||||--+ |.
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi-~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI-ITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred HCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEE-EECCCEEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 11157899997089765455445764872120115665302013578-71596589996487645334135678888765
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCC--------------C----HHHHH
Q ss_conf 99866642068059999836674023577789899-70994156123312443320--------------0----02210
Q gi|254780787|r 445 EMRARGARVTDIAVLVLAADEEIMPQAIESINHAK-AADVSIIVAINKIDKLGADP--------------Q----KVRMS 505 (884)
Q Consensus 445 ~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~-~~~~p~iva~nk~d~~~~~~--------------~----~~~~~ 505 (884)
..-.+.+..+|+++.|+|+-+--.+-..-.+..++ -.++|-|.++||||.+..-. . ++...
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~ 226 (379)
T KOG1423 147 QNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEK 226 (379)
T ss_pred HCHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEECCCHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 37898886388799998556776756807877789986187203304000221466776667760555100345658887
Q ss_pred HHCCCCCCCC------CCCCCEEEEEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCC
Q ss_conf 0001320001------234740363110024774112210000233334200034866
Q gi|254780787|r 506 LLKHDVFVES------MGGDILDVEISAKNNLNLDKLLDAILLQAEMLDLKTSINRKA 557 (884)
Q Consensus 506 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (884)
+... ...+. |..-.-.+.+||+.|.|++++.+.++-++..-+.++....+.
T Consensus 227 f~~~-p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T 283 (379)
T KOG1423 227 FTDV-PSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVT 283 (379)
T ss_pred HCCC-CCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 3559-74335643247645314899840466678999999972379999877766606
No 239
>TIGR00491 aIF-2 translation initiation factor aIF-2; InterPro: IPR004544 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this family undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation.; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=98.59 E-value=1.5e-08 Score=76.47 Aligned_cols=144 Identities=21% Similarity=0.197 Sum_probs=77.3
Q ss_pred HHHHHCCCCHHHHHHHHHCCC--CCEEEEEEEECCCCCCCHHHHHHHHHC--CCEEE-EECCCCCHHHHHHHHHCCCEEE
Q ss_conf 433310231234555421157--653565788512685757788764325--98799-9638999899999998398599
Q gi|254780787|r 687 IIKGDVQGSVEAIVDSLGALK--NSEVCLSIVHSSVGAINETDVSLAKAS--GAVIF-GFNVRASSQARVLAIKDEIKIL 761 (884)
Q Consensus 687 ~ik~d~~gs~eal~~~l~~~~--~~ev~i~v~~~~VG~v~~~DV~~A~~~--~a~Il-~FnVkv~~~a~~~A~~~gV~I~ 761 (884)
+-..-.--|-|.+..+|..|. +...+|+|+. =.++||..-.+. ++.|= |-=++.-++|... +.
T Consensus 441 yenGkeiPsyeivkkflnslkPknldkkikvle-----GkerdvnylkafesdGlienGrltklGrealni-------Wk 508 (1145)
T TIGR00491 441 YENGKEIPSYEIVKKFLNSLKPKNLDKKIKVLE-----GKERDVNYLKAFESDGLIENGRLTKLGREALNI-------WK 508 (1145)
T ss_pred ECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEC-----CCCHHHHHHHHHCCCCCEECCCHHHHHHHHHHH-------HH
T ss_conf 047863750899999985227522124034432-----762012454432137721155201332678876-------52
Q ss_pred EEEHHHHHHHHHHHHHHHH--CCCEEEEE--EEEEEEEEEEEECCC---CCCEEEEEEEEEEEE---CCCEEEEEE--CC
Q ss_conf 7502678999999999630--69404788--887899978873389---870789998521784---698079966--99
Q gi|254780787|r 762 YYKIIYDLLDSIKDSMSEL--LSPEIRET--FLGNAEVLEVFAVTK---LGNVAGCKVSEGKVE---RGSGVRLIR--NS 829 (884)
Q Consensus 762 ~~~IIY~L~d~~~~~~~~~--l~~~~~~~--~~g~a~v~~vF~~~k---~~~i~G~~V~~G~i~---~~~~~~v~r--~~ 829 (884)
.|+-=-+=+|.++..++.. .+-+-.+. +-|+ ||..+- .=..-|+.|-+-||- |++.| +-| +|
T Consensus 509 nhefGkenidymkslieniafvevedveiidydGy-----vydlttethnfianGivvhnTTLLDkIRks~V-v~kEAGg 582 (1145)
T TIGR00491 509 NHEFGKENIDYMKSLIENIAFVEVEDVEIIDYDGY-----VYDLTTETHNFIANGIVVHNTTLLDKIRKSAV-VKKEAGG 582 (1145)
T ss_pred CCCCCCHHHHHHHHHHHHHEEEEEEEEEEEECCCE-----EEEECCCHHHHHHCCEEEECCCCCCCCCCCCE-EEECCCC
T ss_conf 01346125789998874100356520578732762-----67401000123226647851433100033401-3247788
Q ss_pred EEEEEE----EEHHHHHCCHHHH
Q ss_conf 899822----6257664460066
Q gi|254780787|r 830 TVIYEG----KLKTLKRFKDEVS 848 (884)
Q Consensus 830 ~~i~~g----~i~sl~~~k~~v~ 848 (884)
-+-|.| .++-+++.-+|..
T Consensus 583 iTQhiGAsevP~dVI~~ic~Dl~ 605 (1145)
T TIGR00491 583 ITQHIGASEVPLDVIKKICGDLL 605 (1145)
T ss_pred CCEECCCEECCHHHHHHHCHHHH
T ss_conf 40100666546689865132121
No 240
>TIGR00437 feoB ferrous iron transport protein B; InterPro: IPR003373 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent .; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=98.57 E-value=4.2e-08 Score=73.41 Aligned_cols=143 Identities=22% Similarity=0.348 Sum_probs=109.6
Q ss_pred ECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHH---HH------HHCCCCEEEE
Q ss_conf 23685044677788642221001231000121499951784388885166157899986---66------4206805999
Q gi|254780787|r 390 GHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRA---RG------ARVTDIAVLV 460 (884)
Q Consensus 390 ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~---rg------~~~~d~~ilv 460 (884)
|.=+.|||||+-+|.+.|..=|=-=|.|-..---++.+.+..++|||+||==+|+..=. +- .--.|++|=|
T Consensus 1 GNPNVGKStlFN~LTG~~~~vGNwPG~TVek~eg~l~~~g~~i~ivDLPG~YSL~~~S~~dE~v~~dyl~~e~~DLv~nV 80 (733)
T TIGR00437 1 GNPNVGKSTLFNALTGANQKVGNWPGVTVEKKEGKLKFQGEDIEIVDLPGIYSLTTFSGLDEKVARDYLLNEKPDLVVNV 80 (733)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEECCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf 99981589999874158707873588707877889752462789984487300589987427999899753899679997
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCH
Q ss_conf 98366740235777898997099415612331244332000221000013200012347403631100247741122100
Q gi|254780787|r 461 LAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAI 540 (884)
Q Consensus 461 v~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (884)
|||. .++=+-.=.++ +-..++|.|+|||.+|.....--+...+.++. .+ .++.+++||..|.|+..|...+
T Consensus 81 VDA~-nLERnL~LTLQ-L~E~G~p~i~~LN~~DeA~k~GI~Id~~~Lee-----~L--GvPVv~~~A~~g~G~~~L~~~i 151 (733)
T TIGR00437 81 VDAS-NLERNLYLTLQ-LLELGIPMILALNLVDEAEKKGIRIDEEKLEE-----RL--GVPVVPTSATEGRGIEELKDAI 151 (733)
T ss_pred ECHH-HHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHCCCEECHHHHHH-----HC--CCCEEEEEEEECCCHHHHHHHH
T ss_conf 2566-77789999999-99716258568726789977296312577754-----33--8652565321057789999999
Q ss_pred H
Q ss_conf 0
Q gi|254780787|r 541 L 541 (884)
Q Consensus 541 ~ 541 (884)
.
T Consensus 152 ~ 152 (733)
T TIGR00437 152 R 152 (733)
T ss_pred H
T ss_conf 9
No 241
>KOG0410 consensus
Probab=98.56 E-value=4e-07 Score=66.71 Aligned_cols=143 Identities=27% Similarity=0.264 Sum_probs=98.6
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEEC-CCCEEEEEECCCH---------HHHHHHHHHHH
Q ss_conf 5303898623685044677788642221001231000121499951-7843888851661---------57899986664
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAY-QGKNITFLDTPGH---------AAFYEMRARGA 451 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~-~~~~~~~iDtPGh---------~~f~~~r~rg~ 451 (884)
-.|||+|.|--+.|||||+.+|..+++...+-=--|-.--.-.... .+..+.|-||-|+ ++|.+.-.--+
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeVa 256 (410)
T KOG0410 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEVA 256 (410)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHCCCCCHHHEECCCHHHHCCCCCCCEEEEEECHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 78628999634766889999987500583000110125313430079986799960346665474999999999999875
Q ss_pred HCCCCEEEEEECCCCC-CHHHHHHHHHHHHCCCC-------EEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEE
Q ss_conf 2068059999836674-02357778989970994-------156123312443320002210000132000123474036
Q gi|254780787|r 452 RVTDIAVLVLAADEEI-MPQAIESINHAKAADVS-------IIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDV 523 (884)
Q Consensus 452 ~~~d~~ilvv~~~~g~-~~qt~e~~~~~~~~~~p-------~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (884)
-+|+.+-|||+-|.. +.|-.-.+..++..++| +|=+=||||...++.. ++. ...+
T Consensus 257 -eadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e-------------~E~---n~~v 319 (410)
T KOG0410 257 -EADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE-------------EEK---NLDV 319 (410)
T ss_pred -HCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCC-------------CCC---CCCC
T ss_conf -23448998615796688889899999974699847777678742123566556675-------------355---7851
Q ss_pred EEEECCCCCCCCCCCCHH
Q ss_conf 311002477411221000
Q gi|254780787|r 524 EISAKNNLNLDKLLDAIL 541 (884)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~ 541 (884)
++|+++|.|.+++++++.
T Consensus 320 ~isaltgdgl~el~~a~~ 337 (410)
T KOG0410 320 GISALTGDGLEELLKAEE 337 (410)
T ss_pred CCCCCCCCCHHHHHHHHH
T ss_conf 430156754799999888
No 242
>KOG1489 consensus
Probab=98.56 E-value=5.8e-07 Score=65.57 Aligned_cols=144 Identities=25% Similarity=0.296 Sum_probs=97.5
Q ss_pred EEEEEECCCCCHHHHHHHHHH--HHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHH-----------HHHHHHHHHH
Q ss_conf 389862368504467778864--222100123100012149995178438888516615-----------7899986664
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRK--ADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHA-----------AFYEMRARGA 451 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~--~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~-----------~f~~~r~rg~ 451 (884)
=|-.+|-=+.||+|||-+|.+ ..|+....-.+--|||..++ -+-..+++-|-||-- .|..-..
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~y-ddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiE--- 273 (366)
T KOG1489 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNY-DDFSQITVADIPGIIEGAHMNKGLGYKFLRHIE--- 273 (366)
T ss_pred CCCEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEC-CCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHH---
T ss_conf 5432128988678898776405875455420344464112513-545146850476534454346765489999887---
Q ss_pred HCCCCEEEEEECCCCCCHHHHHHHHHHH---------HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEE
Q ss_conf 2068059999836674023577789899---------7099415612331244332000221000013200012347403
Q gi|254780787|r 452 RVTDIAVLVLAADEEIMPQAIESINHAK---------AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILD 522 (884)
Q Consensus 452 ~~~d~~ilvv~~~~g~~~qt~e~~~~~~---------~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (884)
=|++.++|||+.-+..----+.+.++. ...-|.+|++||||.+.+.... ..+|..... +...
T Consensus 274 -R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~-l~~L~~~lq-------~~~V 344 (366)
T KOG1489 274 -RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNL-LSSLAKRLQ-------NPHV 344 (366)
T ss_pred -HHCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH-HHHHHHHCC-------CCCE
T ss_conf -5334899997787555887899999999999986542358538997446736678889-999998737-------9817
Q ss_pred EEEEECCCCCCCCCCCCHH
Q ss_conf 6311002477411221000
Q gi|254780787|r 523 VEISAKNNLNLDKLLDAIL 541 (884)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~ 541 (884)
+++||++++++.+|++.+.
T Consensus 345 ~pvsA~~~egl~~ll~~lr 363 (366)
T KOG1489 345 VPVSAKSGEGLEELLNGLR 363 (366)
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 8764004645688998776
No 243
>KOG0076 consensus
Probab=98.55 E-value=2.8e-07 Score=67.79 Aligned_cols=152 Identities=19% Similarity=0.196 Sum_probs=112.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHH-HHCCC--CCCE----ECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 89862368504467778864222-10012--3100----01214999517843888851661578999866642068059
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADV-AKGEI--GGIT----QHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAV 458 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~-~~~e~--ggit----q~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~i 458 (884)
|-|+|-=..||||+|.++-..-. +.+++ --|| ++||...+ .+.++.|+|-=|.+..-+|-..=-..|..+|
T Consensus 20 vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v--~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii 97 (197)
T KOG0076 20 VLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV--CNAPLSFWDLGGQESLRSLWKKYYWLAHGII 97 (197)
T ss_pred HEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHEECCCCEEECCEEE--CCCEEEEEECCCHHHHHHHHHHHHHHHCEEE
T ss_conf 00242445785208988777887651688888810122403131641--2541677886780878999999999726347
Q ss_pred EEEECCCC-----CCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 99983667-----4023577789899709941561233124433200022100001320001234740363110024774
Q gi|254780787|r 459 LVLAADEE-----IMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNL 533 (884)
Q Consensus 459 lvv~~~~g-----~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (884)
.|||+.+- ...+-...+..-+.-++|.++++||=|+.+.-........... .....-.+.++.|+||++|+|+
T Consensus 98 ~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~--~e~~~~rd~~~~pvSal~gegv 175 (197)
T KOG0076 98 YVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGL--AELIPRRDNPFQPVSALTGEGV 175 (197)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHH--HHHCCCCCCCCCCCHHHHCCCH
T ss_conf 76417777888887999999998787628715434004330305668989877426--6536886576442145405567
Q ss_pred CCCCCCHH
Q ss_conf 11221000
Q gi|254780787|r 534 DKLLDAIL 541 (884)
Q Consensus 534 ~~~~~~~~ 541 (884)
.++...+.
T Consensus 176 ~egi~w~v 183 (197)
T KOG0076 176 KEGIEWLV 183 (197)
T ss_pred HHHHHHHH
T ss_conf 78899999
No 244
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.55 E-value=3.6e-07 Score=67.00 Aligned_cols=113 Identities=18% Similarity=0.201 Sum_probs=74.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEEC-------CCCEEEEEECCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 898623685044677788642221001231000121499951-------7843888851661578999866642068059
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAY-------QGKNITFLDTPGHAAFYEMRARGARVTDIAV 458 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~-------~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~i 458 (884)
|.++|.--.|||+|+..+.+........-.|.-.++...+.. ....+.|.||.|.+.|..||..=-.-+|++|
T Consensus 3 IlllGDsgVGKTSL~~~~~~~~f~~~~~~TiG~~v~~k~~~~~~~~~~~k~~~l~lWDtaGqery~sl~~~yYr~a~gvI 82 (202)
T cd04102 3 VLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGII 82 (202)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCEEE
T ss_conf 99999999899999999983988888888503678999999337876783899999989987757767899758898999
Q ss_pred EEEECCCCCCHHHHHHHH-----------------------HHHHCCCCEEEECCCCCCCCCC
Q ss_conf 999836674023577789-----------------------8997099415612331244332
Q gi|254780787|r 459 LVLAADEEIMPQAIESIN-----------------------HAKAADVSIIVAINKIDKLGAD 498 (884)
Q Consensus 459 lvv~~~~g~~~qt~e~~~-----------------------~~~~~~~p~iva~nk~d~~~~~ 498 (884)
||.|+.+----.-+..|. ......+|++|+-||.|+....
T Consensus 83 LVyDvTnr~SF~nL~~Wl~Eil~~~~~~~~~~~~~~~~~~~~~~~~~vPilvVGtK~D~~~~r 145 (202)
T cd04102 83 LVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHCCCC
T ss_conf 999894989998699999999753676665455666555333467897589997606524343
No 245
>KOG1532 consensus
Probab=98.52 E-value=2.1e-08 Score=75.50 Aligned_cols=166 Identities=20% Similarity=0.319 Sum_probs=108.1
Q ss_pred CCCCCCCCEEEEEECCCCCHHHHHHHHHHH---------------------------------------HHHHCCCCCCE
Q ss_conf 001255303898623685044677788642---------------------------------------22100123100
Q gi|254780787|r 377 SDLDIRPPVVTIMGHVDHGKTSLLDAIRKA---------------------------------------DVAKGEIGGIT 417 (884)
Q Consensus 377 ~~~~~R~pvv~v~ghvd~GKt~lld~~r~~---------------------------------------~~~~~e~ggit 417 (884)
+....||+++-|+|---.||||.+-.|-.- +.+-|--|||+
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV 92 (366)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 55556870799994477884139999999986236998088678888548886677566543099999983889986403
Q ss_pred ECCCEEEEE-----------CCCCEEEEEECCCH-HHHHHHHHHHHHCC--------CCEEEEEECCCCCCHHHHH----
Q ss_conf 012149995-----------17843888851661-57899986664206--------8059999836674023577----
Q gi|254780787|r 418 QHIGAYQVA-----------YQGKNITFLDTPGH-AAFYEMRARGARVT--------DIAVLVLAADEEIMPQAIE---- 473 (884)
Q Consensus 418 q~iga~~~~-----------~~~~~~~~iDtPGh-~~f~~~r~rg~~~~--------d~~ilvv~~~~g~~~qt~e---- 473 (884)
-.+.-|... .+.....+|||||. ++|+ --+.|+-+| -+++.|||.-..-.|-|-=
T Consensus 93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~Ft-WSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMl 171 (366)
T KOG1532 93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFT-WSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNML 171 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEE-ECCCCCCHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHH
T ss_conf 358999987899999999742204779974888068998-4278501586676139859999944776788416998899
Q ss_pred -HHHHHHHCCCCEEEECCCCCCCCCCCCHH-HHHH-------------------HCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf -78989970994156123312443320002-2100-------------------00132000123474036311002477
Q gi|254780787|r 474 -SINHAKAADVSIIVAINKIDKLGADPQKV-RMSL-------------------LKHDVFVESMGGDILDVEISAKNNLN 532 (884)
Q Consensus 474 -~~~~~~~~~~p~iva~nk~d~~~~~~~~~-~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (884)
+-.++-+.++||||+.||+|......... .+.| ...-+..+++....-.+-+|+++|.|
T Consensus 172 YAcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G 251 (366)
T KOG1532 172 YACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEG 251 (366)
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCC
T ss_conf 99999986268769997143445618899999999999999976303266776654798999998317557774045786
Q ss_pred CCCCCCCHHCC
Q ss_conf 41122100002
Q gi|254780787|r 533 LDKLLDAILLQ 543 (884)
Q Consensus 533 ~~~~~~~~~~~ 543 (884)
.++++.++.-.
T Consensus 252 ~ddf~~av~~~ 262 (366)
T KOG1532 252 FDDFFTAVDES 262 (366)
T ss_pred HHHHHHHHHHH
T ss_conf 78899999999
No 246
>PRK12735 elongation factor Tu; Reviewed
Probab=98.50 E-value=1.2e-05 Score=56.48 Aligned_cols=108 Identities=18% Similarity=0.355 Sum_probs=82.4
Q ss_pred EEEEEHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEE--CCEEEEEEEE
Q ss_conf 99750267899999999963069404788887899978873389870789998521784698079966--9989982262
Q gi|254780787|r 760 ILYYKIIYDLLDSIKDSMSELLSPEIRETFLGNAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIR--NSTVIYEGKL 837 (884)
Q Consensus 760 I~~~~IIY~L~d~~~~~~~~~l~~~~~~~~~g~a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r--~~~~i~~g~i 837 (884)
....+-|+.|+|.+..++. .|.....-.-+.-|-.+|.++..|.|+.-+|..|+|+.|..+.++. .+. ..+|
T Consensus 185 ~~~~~~i~~Ll~~l~~~~~---~p~r~~~~pfrl~Id~vf~v~G~GtVVtGtV~sG~i~~Gd~v~i~~~~~~~---~~~V 258 (396)
T PRK12735 185 WIGEAKILELMEALDSYIP---TPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKDTQ---KTTV 258 (396)
T ss_pred CCCHHHHHHHHHHHHHHCC---CCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEEEECCCCC---EEEE
T ss_conf 3444779999999885267---877777886599976477767971599989812156279989997269984---6999
Q ss_pred HHHHHCCHHHHHHHCCCEEEEEEECC--EEEEECCEEE
Q ss_conf 57664460066872797669997284--1100589899
Q gi|254780787|r 838 KTLKRFKDEVSEVHAGQDCGMAFEKY--DNIQAGDMIE 873 (884)
Q Consensus 838 ~sl~~~k~~v~ev~~g~ecgi~~~~~--~~~~~gD~i~ 873 (884)
.||+.+...|.++..|+-|+|.+.|. +|++-||+|-
T Consensus 259 ~sIq~~~~~v~~a~aG~~v~l~L~gi~~~~i~rG~VL~ 296 (396)
T PRK12735 259 TGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLA 296 (396)
T ss_pred EEEEECCCCCCEECCCCEEEEEECCCCHHHCCCEEEEE
T ss_conf 99998670802714887899994799889856267996
No 247
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381 Members of this family function in ethanolamine and propanediol degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=98.50 E-value=1e-07 Score=70.67 Aligned_cols=135 Identities=27% Similarity=0.316 Sum_probs=98.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCC----HHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 898623685044677788642221001231000121499951784388885166----1578999866642068059999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPG----HAAFYEMRARGARVTDIAVLVL 461 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPG----h~~f~~~r~rg~~~~d~~ilvv 461 (884)
+-+||.|--|||||.-+|++..+-..- ||-|--+. -..||||| |-.|-.==.--+.=+|+.+||-
T Consensus 3 ~~f~G~~gCGKTTL~q~L~g~~~~YKK----TQAvE~~~-------k~~IDTPGEY~enr~~Y~AL~vtaaDAd~i~lV~ 71 (144)
T TIGR02528 3 IMFIGSVGCGKTTLTQALQGEEIKYKK----TQAVEYKD-------KEAIDTPGEYVENRRYYSALIVTAADADVIALVQ 71 (144)
T ss_pred EEEEECCCCCHHHHHHHCCCCCCCEEE----EEEEEECC-------CCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEEE
T ss_conf 788715888744354311687321023----34454258-------8865598500157523788888872102366773
Q ss_pred ECCCCCCHHHHHHHHHHHHCCC-CEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCH
Q ss_conf 8366740235777898997099-415612331244332000221000013200012347403631100247741122100
Q gi|254780787|r 462 AADEEIMPQAIESINHAKAADV-SIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAI 540 (884)
Q Consensus 462 ~~~~g~~~qt~e~~~~~~~~~~-p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (884)
+++++- +.-+-..+--..- |.|=.|+|+|++..+.+..+.+..- ..+|....+.+++.--.|++++++.+
T Consensus 72 ~a~~~~---~~f~PgF~~~f~kK~~IG~vTK~DLA~~d~~i~r~~~~L------~~AG~~~iF~~~~~d~~G~~~l~~yL 142 (144)
T TIGR02528 72 SATDEE---SRFSPGFASIFVKKEVIGIVTKIDLAEADKDIERAKRLL------ETAGAEKIFEISSVDEKGIEELVDYL 142 (144)
T ss_pred CCCCCC---CCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHH------HHCCCCCCEEECCCCCHHHHHHHHHH
T ss_conf 577642---237850002367886347884037887734799999998------72365433165077804589999984
No 248
>KOG0394 consensus
Probab=98.49 E-value=8.8e-07 Score=64.35 Aligned_cols=160 Identities=24% Similarity=0.278 Sum_probs=110.1
Q ss_pred CCCE-EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEE----CCCCE--EEEEECCCHHHHHHHHHHHHHCC
Q ss_conf 5303-89862368504467778864222100123100012149995----17843--88885166157899986664206
Q gi|254780787|r 382 RPPV-VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVA----YQGKN--ITFLDTPGHAAFYEMRARGARVT 454 (884)
Q Consensus 382 R~pv-v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~----~~~~~--~~~iDtPGh~~f~~~r~rg~~~~ 454 (884)
|.+. |.|||.--||||+|+-..-+...-..- --.|||-++. .+... +.+-||-|.|.|-+|+..=-.-+
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qy----kaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRga 82 (210)
T KOG0394 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQY----KATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGA 82 (210)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH----CCCCCCEEEEEEEEECCEEEEEEEEECCCHHHHHHCCCCEECCC
T ss_conf 64359999379984478999999888888874----32000110322799867699999873311777631464112477
Q ss_pred CCEEEEEECCCCCCHHHHHHHH--HHHHCC------CCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEE
Q ss_conf 8059999836674023577789--899709------94156123312443320002210000132000123474036311
Q gi|254780787|r 455 DIAVLVLAADEEIMPQAIESIN--HAKAAD------VSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEIS 526 (884)
Q Consensus 455 d~~ilvv~~~~g~~~qt~e~~~--~~~~~~------~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (884)
|..+||-|.++-=.=.+++.|. .+..+. -||||.-||||...+....+-...++.- -...|+++...+|
T Consensus 83 DcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~W---C~s~gnipyfEtS 159 (210)
T KOG0394 83 DCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTW---CKSKGNIPYFETS 159 (210)
T ss_pred CEEEEEECCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCEEEHHHHHHH---HHHCCCCEEEEEC
T ss_conf 5478983268646651187899999874687997756679975511477775012018899999---9865995068710
Q ss_pred ECCCCCCCCCCCCHHCCCCCCC
Q ss_conf 0024774112210000233334
Q gi|254780787|r 527 AKNNLNLDKLLDAILLQAEMLD 548 (884)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~ 548 (884)
|+...|++..++.+.-.+...+
T Consensus 160 AK~~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394 160 AKEATNVDEAFEEIARRALANE 181 (210)
T ss_pred CCCCCCHHHHHHHHHHHHHHCC
T ss_conf 2434468999999999998612
No 249
>KOG0092 consensus
Probab=98.44 E-value=6.2e-07 Score=65.36 Aligned_cols=149 Identities=26% Similarity=0.358 Sum_probs=96.0
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEE----ECCC--CEEEEEECCCHHHH---HHHHHHHH
Q ss_conf 553038986236850446777886422210012310001214999----5178--43888851661578---99986664
Q gi|254780787|r 381 IRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQV----AYQG--KNITFLDTPGHAAF---YEMRARGA 451 (884)
Q Consensus 381 ~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~----~~~~--~~~~~iDtPGh~~f---~~~r~rg~ 451 (884)
.|.-=+++||-...|||||+-+.-+-.--.. +-..|||-++ ..+. .++-+-||-|.|.| ..|=-||+
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~----~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA 78 (200)
T KOG0092 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHEN----IEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGA 78 (200)
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHCCCCCC----CCCCCCEEEEEEEEEECCCEEEEEEEECCCCCCCCCCCCCEECCC
T ss_conf 4257999986787770241122232756632----345400078999998489578999987677300335561010477
Q ss_pred HCCCCEEEEEECCCCCCHHHHHHH-HHHHHCCCC-EEEEC--CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEE
Q ss_conf 206805999983667402357778-989970994-15612--33124433200022100001320001234740363110
Q gi|254780787|r 452 RVTDIAVLVLAADEEIMPQAIESI-NHAKAADVS-IIVAI--NKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISA 527 (884)
Q Consensus 452 ~~~d~~ilvv~~~~g~~~qt~e~~-~~~~~~~~p-~iva~--nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (884)
+.||||-|+++-=.=++...| ..+....-| +|||| ||+|+.. ...+..+ +...+.+. ...+++.+||
T Consensus 79 ---~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~--~R~V~~~--ea~~yAe~--~gll~~ETSA 149 (200)
T KOG0092 79 ---NAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE--RREVEFE--EAQAYAES--QGLLFFETSA 149 (200)
T ss_pred ---CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHC--CCCCCHH--HHHHHHHH--CCCEEEEEEC
T ss_conf ---6799998556678999999999999862798759998325165410--3454688--88989985--4987999852
Q ss_pred CCCCCCCCCCCCHHC
Q ss_conf 024774112210000
Q gi|254780787|r 528 KNNLNLDKLLDAILL 542 (884)
Q Consensus 528 ~~~~~~~~~~~~~~~ 542 (884)
++|.|+++++..|.-
T Consensus 150 KTg~Nv~~if~~Ia~ 164 (200)
T KOG0092 150 KTGENVNEIFQAIAE 164 (200)
T ss_pred CCCCCHHHHHHHHHH
T ss_conf 556589999999997
No 250
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.43 E-value=1e-06 Score=63.94 Aligned_cols=152 Identities=17% Similarity=0.195 Sum_probs=86.9
Q ss_pred EEEEECCCCCHHHHH-HHHHHHHHHHCCC--------CCCEECCC---EE---EEECCC--CEEEEEECCCHHHHHHHHH
Q ss_conf 898623685044677-7886422210012--------31000121---49---995178--4388885166157899986
Q gi|254780787|r 386 VTIMGHVDHGKTSLL-DAIRKADVAKGEI--------GGITQHIG---AY---QVAYQG--KNITFLDTPGHAAFYEMRA 448 (884)
Q Consensus 386 v~v~ghvd~GKt~ll-d~~r~~~~~~~e~--------ggitq~ig---a~---~~~~~~--~~~~~iDtPGh~~f~~~r~ 448 (884)
|.++|--.-|||+|| -+..+.....++. +++-+... .+ ....++ ..+.+-||.|++.+. |.
T Consensus 5 iVlvGDs~VGKTsLl~~~~~n~~~~~~~~~~~~~pTv~~~~~~~~~~~~~~~~~~~vdg~~v~L~iWDTAG~~~~~--r~ 82 (195)
T cd01873 5 CVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDKD--RR 82 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEECCEEEEEEEEECCCCHHHC--CC
T ss_conf 9998789989899997787478765565666758866333331344443022114218959999999789962001--21
Q ss_pred HHHHCCCCEEEEEECCCCCCHHHHHH--HHHHHH--CCCCEEEECCCCCCCCCCCCHHHH---------------HHHCC
Q ss_conf 66420680599998366740235777--898997--099415612331244332000221---------------00001
Q gi|254780787|r 449 RGARVTDIAVLVLAADEEIMPQAIES--INHAKA--ADVSIIVAINKIDKLGADPQKVRM---------------SLLKH 509 (884)
Q Consensus 449 rg~~~~d~~ilvv~~~~g~~~qt~e~--~~~~~~--~~~p~iva~nk~d~~~~~~~~~~~---------------~~~~~ 509 (884)
-.-.-+|+++|+.|+.+----+.+.. +..++. -++|+|++-||+|+-+.+.+.... ...+.
T Consensus 83 ~~y~~~~~~ll~fdv~~~~Sf~~v~~~W~~ei~~~~~~~piiLVG~K~DLr~~~~~~~~~~~~~~~~~~~~~~~v~~ee~ 162 (195)
T cd01873 83 FAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETG 162 (195)
T ss_pred CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCCCHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf 43568889999996698014899999999999986899988999637575446302455543001365543576789999
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCCCCCCCHH
Q ss_conf 32000123474036311002477411221000
Q gi|254780787|r 510 DVFVESMGGDILDVEISAKNNLNLDKLLDAIL 541 (884)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (884)
.....++| ...+.+||++++|++++++.+.
T Consensus 163 ~~~A~~~g--~~y~EtSAkt~~gV~e~F~~ai 192 (195)
T cd01873 163 RAVAKELG--IPYYETSVVTQFGVKDVFDNAI 192 (195)
T ss_pred HHHHHHHC--CEEEECCCCCCCCHHHHHHHHH
T ss_conf 99999829--9899828487989799999999
No 251
>PRK00049 elongation factor Tu; Reviewed
Probab=98.42 E-value=1.2e-05 Score=56.64 Aligned_cols=105 Identities=17% Similarity=0.368 Sum_probs=78.7
Q ss_pred EEHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEE--CCEEEEEEEEHHH
Q ss_conf 50267899999999963069404788887899978873389870789998521784698079966--9989982262576
Q gi|254780787|r 763 YKIIYDLLDSIKDSMSELLSPEIRETFLGNAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIR--NSTVIYEGKLKTL 840 (884)
Q Consensus 763 ~~IIY~L~d~~~~~~~~~l~~~~~~~~~g~a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r--~~~~i~~g~i~sl 840 (884)
++-|+.|++.+..++. .|.....-.-+.-|-.+|.++..|.|+.-+|..|+|+.|..+.++- .+.. .+|.||
T Consensus 189 ~~~i~~Ll~~ld~~~~---~p~r~~~~p~r~~Id~vf~i~G~GtVVtGtv~sG~i~~Gd~v~i~~~~~~~~---~~VksI 262 (397)
T PRK00049 189 EAKILELMEAVDSYIP---EPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRDTQK---TTVTGV 262 (397)
T ss_pred HHHHHHHHHHHHHHCC---CCCCCCCCCEEEEECCEEEECCCCEEEEEEEEEEEECCCCEEEEEECCCCCE---EEEEEE
T ss_conf 7899999999986477---8888888860777233887679727999898000560799899960698847---999999
Q ss_pred HHCCHHHHHHHCCCEEEEEEECC--EEEEECCEEE
Q ss_conf 64460066872797669997284--1100589899
Q gi|254780787|r 841 KRFKDEVSEVHAGQDCGMAFEKY--DNIQAGDMIE 873 (884)
Q Consensus 841 ~~~k~~v~ev~~g~ecgi~~~~~--~~~~~gD~i~ 873 (884)
+.+++.|.++..|+-|+|.|.|. .|++-||+|-
T Consensus 263 q~~~~~v~~a~aG~~v~i~L~gi~~~~I~rG~vL~ 297 (397)
T PRK00049 263 EMFRKLLDEGQAGDNVGLLLRGIKREDVERGQVLA 297 (397)
T ss_pred EECCEEEEEECCCCEEEEEECCCCHHHCCCCCEEE
T ss_conf 96270702635887799997799889857601995
No 252
>PTZ00099 rab6; Provisional
Probab=98.42 E-value=6.7e-07 Score=65.15 Aligned_cols=108 Identities=20% Similarity=0.153 Sum_probs=75.2
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH-HHH---HCCCCEEEECCCCCCCCCCCCHHHH
Q ss_conf 843888851661578999866642068059999836674023577789-899---7099415612331244332000221
Q gi|254780787|r 429 GKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESIN-HAK---AADVSIIVAINKIDKLGADPQKVRM 504 (884)
Q Consensus 429 ~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~-~~~---~~~~p~iva~nk~d~~~~~~~~~~~ 504 (884)
...+.+.||.|++.|..|+..=..-++++|||.|+.+---=+.+..|. .+. ..++|++++-||+|+... ..+..
T Consensus 28 ~v~l~IWDTAGqE~f~sl~~~y~r~a~~~ilVyDit~~~SF~~l~~W~~~i~~~~~~~~~iiLVGNK~DL~~~--r~V~~ 105 (176)
T PTZ00099 28 PVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL--RKVTY 105 (176)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHH--CCCCH
T ss_conf 9999999799863413576887079867999850420778999999999999853887743999855655861--68599
Q ss_pred HHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHC
Q ss_conf 00001320001234740363110024774112210000
Q gi|254780787|r 505 SLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAILL 542 (884)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (884)
+ +...+...+ +..++.+||++|.|++++++.+.-
T Consensus 106 e--e~~~~A~~~--~~~f~EtSAktg~nV~e~F~~la~ 139 (176)
T PTZ00099 106 E--EGMQKAQEY--NTMFHETSAKAGHNIKVLFKKIAA 139 (176)
T ss_pred H--HHHHHHHHC--CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9--999999985--999999848999498999999999
No 253
>pfam00350 Dynamin_N Dynamin family.
Probab=98.40 E-value=2e-06 Score=61.95 Aligned_cols=107 Identities=20% Similarity=0.307 Sum_probs=70.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECC-----C----------E----------------------------
Q ss_conf 89862368504467778864222100123100012-----1----------4----------------------------
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHI-----G----------A---------------------------- 422 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~i-----g----------a---------------------------- 422 (884)
|.|+|+.-.||+|||-+|-+.++...-++.-|-.+ | .
T Consensus 1 ivvvG~~ssGKSSliNALlG~~ilP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (168)
T pfam00350 1 IAVVGDQSAGKSSVLNALLGRDILPRGPGPTTRRPLVLRLGEEPGAIPGAVKVEYKDGLKKFEDFSELREEIEDETDKIS 80 (168)
T ss_pred CEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 98991788989999999978873688997651671899957887655541211123330014889999999997554313
Q ss_pred ------------EE-EECCCCEEEEEECCCHHHH----HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH-HHHHCCCC
Q ss_conf ------------99-9517843888851661578----999866642068059999836674023577789-89970994
Q gi|254780787|r 423 ------------YQ-VAYQGKNITFLDTPGHAAF----YEMRARGARVTDIAVLVLAADEEIMPQAIESIN-HAKAADVS 484 (884)
Q Consensus 423 ------------~~-~~~~~~~~~~iDtPGh~~f----~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~-~~~~~~~p 484 (884)
+. .......++||||||.-+- ..|-..=..-+|++++|++|+..+..|-..-+. .+...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~lvDtPGl~s~~~~~~~~t~~~i~~~d~il~V~~a~~~~~~~~~~~l~~~~d~~~~r 160 (168)
T pfam00350 81 GTGKGISSEPIILEILSPLVPGLTLVDTPGLDSVAVGDQDLTEEYIKPADIILAVVDANHDLSTSEALFLAREVDPNGKR 160 (168)
T ss_pred CCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCE
T ss_conf 45778777108998368888881898279865444336999999985386699998469516661999999973999983
Q ss_pred EEEECCCC
Q ss_conf 15612331
Q gi|254780787|r 485 IIVAINKI 492 (884)
Q Consensus 485 ~iva~nk~ 492 (884)
+|+++||.
T Consensus 161 ~i~V~tk~ 168 (168)
T pfam00350 161 TIGVLTKD 168 (168)
T ss_pred EEEEECCC
T ss_conf 89998188
No 254
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.37 E-value=5.2e-06 Score=59.07 Aligned_cols=90 Identities=21% Similarity=0.409 Sum_probs=73.9
Q ss_pred CCCEEEEEEEEEEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHCCHHHHHHHCCCEEEEEE
Q ss_conf 69404788887899978873389870789998521784698079966998998226257664460066872797669997
Q gi|254780787|r 781 LSPEIRETFLGNAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRFKDEVSEVHAGQDCGMAF 860 (884)
Q Consensus 781 l~~~~~~~~~g~a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~ 860 (884)
..+.....-.-+.-|..+|+.+..|.|+.-+|..|.|+.|..+.++-.+.. ++|+||..+..+|.++..|+.|+|.|
T Consensus 217 ~~~~~~~~~p~r~~I~~v~~~~g~Gtvv~G~v~sG~i~~Gd~v~i~Ps~~~---~~VksI~~~~~~v~~a~aG~~v~l~L 293 (426)
T PRK12317 217 KPPEKPTDKPLRIPIQDVYSITGVGTVPVGRVETGVLKVGDKVVFMPAGKV---GEVKSIEMHHEELPQAEPGDNIGFNV 293 (426)
T ss_pred CCCCCCCCCCEEEEEEEEEEECCCEEEEEEEECCCCCCCCCEEEEECCCCC---EEEEEEEECCCEEEEEECCCEEEEEE
T ss_conf 777665578535578778840687079986844385437999999679986---58976886694788995898699998
Q ss_pred EC--CEEEEECCEEE
Q ss_conf 28--41100589899
Q gi|254780787|r 861 EK--YDNIQAGDMIE 873 (884)
Q Consensus 861 ~~--~~~~~~gD~i~ 873 (884)
.+ .+|+.-||+|-
T Consensus 294 ~~i~~~dI~rG~Vl~ 308 (426)
T PRK12317 294 RGVGKNDIKRGDVAG 308 (426)
T ss_pred ECCCHHCCCCCCEEE
T ss_conf 367442277864894
No 255
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.37 E-value=1.3e-06 Score=63.28 Aligned_cols=84 Identities=30% Similarity=0.425 Sum_probs=60.6
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHH--HHHCCCCCCEECCCEEEEECCCCEEEEEECCCH-HHHHHHHHHH------HHC
Q ss_conf 3038986236850446777886422--210012310001214999517843888851661-5789998666------420
Q gi|254780787|r 383 PPVVTIMGHVDHGKTSLLDAIRKAD--VAKGEIGGITQHIGAYQVAYQGKNITFLDTPGH-AAFYEMRARG------ARV 453 (884)
Q Consensus 383 ~pvv~v~ghvd~GKt~lld~~r~~~--~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh-~~f~~~r~rg------~~~ 453 (884)
.--|.+.|-=..||+|||-+|.+|. +++.++- |-..-+-.+++++..|.++|+||- +.++.-|.|| +.-
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FT--Tl~~vPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vls~~R~ 140 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFT--TLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCE--ECCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf 7389997688745899998876887643456741--02445744754781699972763125765688876465465215
Q ss_pred CCCEEEEEECCCCCC
Q ss_conf 680599998366740
Q gi|254780787|r 454 TDIAVLVLAADEEIM 468 (884)
Q Consensus 454 ~d~~ilvv~~~~g~~ 468 (884)
||++|+|+|+.....
T Consensus 141 ADlIiiVld~~~~~~ 155 (365)
T COG1163 141 ADLIIIVLDVFEDPH 155 (365)
T ss_pred CCEEEEEEECCCCHH
T ss_conf 888999971688824
No 256
>KOG0070 consensus
Probab=98.35 E-value=1.1e-06 Score=63.75 Aligned_cols=149 Identities=18% Similarity=0.178 Sum_probs=106.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 89862368504467778864222100123100012149995178438888516615789998666420680599998366
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADE 465 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~ 465 (884)
|.++|==..||||+|=+|....+...- =|.--..-.+.+.+..++|-|.=|+..+-++-.-=-.-++.+|+|||..|
T Consensus 20 IlmvGLD~AGKTTILyklk~~E~vttv---PTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~nt~~lIfVvDS~D 96 (181)
T KOG0070 20 ILMVGLDAAGKTTILYKLKLGEIVTTV---PTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSD 96 (181)
T ss_pred EEEEECCCCCCCEEEEECCCCCCCCCC---CCCCCCEEEEEECCEEEEEEECCCCCCCCCCHHHHCCCCCEEEEEEECCC
T ss_conf 999961689860156750258741477---86453136999866189998158873545313532037727999981773
Q ss_pred CC-CHHHHHHH-HHHHH---CCCCEEEECCCCCCCCCCCCH-HHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 74-02357778-98997---099415612331244332000-22100001320001234740363110024774112210
Q gi|254780787|r 466 EI-MPQAIESI-NHAKA---ADVSIIVAINKIDKLGADPQK-VRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDA 539 (884)
Q Consensus 466 g~-~~qt~e~~-~~~~~---~~~p~iva~nk~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (884)
-. .+-+.+-+ .++.. .++|++|..||.|.+++-... +.+.+..+.+.. ..-.+..++|.+|+|+.++++.
T Consensus 97 r~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~----~~w~iq~~~a~~G~GL~egl~w 172 (181)
T KOG0070 97 RERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRS----RNWHIQSTCAISGEGLYEGLDW 172 (181)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHCCCCCCHHHHHHHHHHHCCCC----CCCEEEEECCCCCCCHHHHHHH
T ss_conf 888999999999997683447736999842120424578889886743301468----8728953013565448999999
Q ss_pred HH
Q ss_conf 00
Q gi|254780787|r 540 IL 541 (884)
Q Consensus 540 ~~ 541 (884)
+.
T Consensus 173 l~ 174 (181)
T KOG0070 173 LS 174 (181)
T ss_pred HH
T ss_conf 99
No 257
>KOG0078 consensus
Probab=98.29 E-value=4.8e-06 Score=59.28 Aligned_cols=150 Identities=22% Similarity=0.191 Sum_probs=105.0
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHH--HCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 303898623685044677788642221--001231000121499951784388885166157899986664206805999
Q gi|254780787|r 383 PPVVTIMGHVDHGKTSLLDAIRKADVA--KGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 383 ~pvv~v~ghvd~GKt~lld~~r~~~~~--~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
--.|.++|--+.|||.||+.+-.-.-. .--.-||-=++....++....++.+.||-|.+.|-.|-.-=..-+++++||
T Consensus 12 ~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~Lv 91 (207)
T KOG0078 12 LFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLV 91 (207)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHCCEEEEE
T ss_conf 89999977898765576665440667677651587887888998389089999997243056788999998654824999
Q ss_pred EECCC-----CCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 98366-----7402357778989970994156123312443320002210000132000123474036311002477411
Q gi|254780787|r 461 LAADE-----EIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDK 535 (884)
Q Consensus 461 v~~~~-----g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (884)
+|+.. ++.. =++.|.......+|.|.+=||+|... ...+..+..+ .+..++ ++.+..+||+++.|+++
T Consensus 92 yDitne~Sfeni~~-W~~~I~e~a~~~v~~~LvGNK~D~~~--~R~V~~e~ge--~lA~e~--G~~F~EtSAk~~~NI~e 164 (207)
T KOG0078 92 YDITNEKSFENIRN-WIKNIDEHASDDVVKILVGNKCDLEE--KRQVSKERGE--ALAREY--GIKFFETSAKTNFNIEE 164 (207)
T ss_pred EECCCHHHHHHHHH-HHHHHHHHCCCCCCEEEEECCCCCCC--CCCCCHHHHH--HHHHHH--CCEEEECCCCCCCCHHH
T ss_conf 98452577777999-99999863788874898511412101--3335679999--999984--98279713367998899
Q ss_pred CCCC
Q ss_conf 2210
Q gi|254780787|r 536 LLDA 539 (884)
Q Consensus 536 ~~~~ 539 (884)
.+-.
T Consensus 165 aF~~ 168 (207)
T KOG0078 165 AFLS 168 (207)
T ss_pred HHHH
T ss_conf 9999
No 258
>KOG0098 consensus
Probab=98.27 E-value=6.1e-06 Score=58.59 Aligned_cols=143 Identities=25% Similarity=0.282 Sum_probs=95.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 89862368504467778864222100123100012149995178--4388885166157899986664206805999983
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQG--KNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
+-|||.---||+.||-......-+.----.|-..-|+..+..++ +++.+-||-||+.|-..+..--.-+-.||||-|+
T Consensus 9 yIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydi 88 (216)
T KOG0098 9 YIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDI 88 (216)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECEEEEEECCCEEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 99987777328899999851576545343022440236988858168999975578676999888884467623899971
Q ss_pred CCCCCHHHHHHHHHH-------HH---CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 667402357778989-------97---09941561233124433200022100001320001234740363110024774
Q gi|254780787|r 464 DEEIMPQAIESINHA-------KA---ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNL 533 (884)
Q Consensus 464 ~~g~~~qt~e~~~~~-------~~---~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (884)
.. .|+++|| +. -|.-|++.-||+|+..-. .+..+ +-..+.+++ |..+ ..+||.+++++
T Consensus 89 t~------r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR--~Vs~E--EGeaFA~eh-gLif-mETSakt~~~V 156 (216)
T KOG0098 89 TR------RESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARR--EVSKE--EGEAFAREH-GLIF-METSAKTAENV 156 (216)
T ss_pred CC------HHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCC--CCCHH--HHHHHHHHC-CCEE-EHHHHHHHHHH
T ss_conf 30------6667789999999997267883899974414421023--46588--899999973-9544-41244554239
Q ss_pred CCCCCCH
Q ss_conf 1122100
Q gi|254780787|r 534 DKLLDAI 540 (884)
Q Consensus 534 ~~~~~~~ 540 (884)
++.+..+
T Consensus 157 EEaF~nt 163 (216)
T KOG0098 157 EEAFINT 163 (216)
T ss_pred HHHHHHH
T ss_conf 9999999
No 259
>PRK12736 elongation factor Tu; Reviewed
Probab=98.25 E-value=6.8e-06 Score=58.26 Aligned_cols=106 Identities=22% Similarity=0.399 Sum_probs=79.6
Q ss_pred EHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHC
Q ss_conf 02678999999999630694047888878999788733898707899985217846980799669989982262576644
Q gi|254780787|r 764 KIIYDLLDSIKDSMSELLSPEIRETFLGNAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRF 843 (884)
Q Consensus 764 ~IIY~L~d~~~~~~~~~l~~~~~~~~~g~a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~ 843 (884)
+-|++|++.+..++. .|.....-.-+.-|-.+|.++..|.|+.-+|..|+|+.|..+.++--+.. -..+|.||+.+
T Consensus 187 ~~i~~Ll~~ld~~~~---~p~r~~~~p~r~~Id~vf~v~G~GtVvtG~V~sG~i~~Gd~v~i~~~~~~-~~~~VrsI~~~ 262 (394)
T PRK12736 187 DAIMELMDAVDEYIP---TPERDTDKPFLMPVEDVFSITGRGTVVTGRVERGTVKVGDEVEIVGIKET-QKTTVTGVEMF 262 (394)
T ss_pred HHHHHHHHHHHHHCC---CCCCCCCCCEEEEEEEEEEECCCEEEEEEEEEECEEECCCEEEEEECCCC-CEEEEEEEEEC
T ss_conf 789999999985277---88887777628871117860897589999980146865998999707998-07999987367
Q ss_pred CHHHHHHHCCCEEEEEEECC--EEEEECCEEE
Q ss_conf 60066872797669997284--1100589899
Q gi|254780787|r 844 KDEVSEVHAGQDCGMAFEKY--DNIQAGDMIE 873 (884)
Q Consensus 844 k~~v~ev~~g~ecgi~~~~~--~~~~~gD~i~ 873 (884)
..+|.++..|+-|++.+.|. +|++-||+|-
T Consensus 263 ~~~v~~a~aG~~v~l~L~gid~~~i~rG~vL~ 294 (394)
T PRK12736 263 RKLLDEGQAGDNVGVLLRGVDRDEVERGQVLA 294 (394)
T ss_pred CCCCCCCCCCCEEEEEECCCCHHHCCCEEEEE
T ss_conf 83724804767899997689989967166996
No 260
>KOG0090 consensus
Probab=98.18 E-value=3.2e-06 Score=60.54 Aligned_cols=125 Identities=20% Similarity=0.274 Sum_probs=78.1
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHH---HHHCCCCEE
Q ss_conf 53038986236850446777886422210012310001214999517843888851661578999866---642068059
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRAR---GARVTDIAV 458 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~r---g~~~~d~~i 458 (884)
-+|-|-+.|--|.|||+|+--|+.-.... -.--|+-+-|+|.+-... .++||-|||...-.--.- +..-.-.+|
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~-TvtSiepn~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090 37 KQNAVLLVGLSDSGKTSLFTQLITGSHRG-TVTSIEPNEATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CCCCEEEEECCCCCCEEEEEEHHCCCCCC-EEEEECCCEEEEEECCCC--EEEEECCCCHHHHHHHHHHCCCCCCCEEEE
T ss_conf 68868999327898335542001387367-032104661357636862--388757995889999998734655221599
Q ss_pred EEEECCCCCCH--------HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCC
Q ss_conf 99983667402--------3577789899709941561233124433200022100001
Q gi|254780787|r 459 LVLAADEEIMP--------QAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKH 509 (884)
Q Consensus 459 lvv~~~~g~~~--------qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~ 509 (884)
.|||+..=... =++=.....+..++|+.||+||-|+..+.+....+..++.
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEk 172 (238)
T KOG0090 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEK 172 (238)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHCCCHHHHHHHHHH
T ss_conf 99833224600679999999999860123479988999555223213859999999999
No 261
>KOG0077 consensus
Probab=98.16 E-value=9.9e-06 Score=57.17 Aligned_cols=115 Identities=22% Similarity=0.237 Sum_probs=80.2
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 30389862368504467778864222100123100012149995178438888516615789998666420680599998
Q gi|254780787|r 383 PPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLA 462 (884)
Q Consensus 383 ~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~ 462 (884)
+-=.-.+|-=+.||||||..|..-....--. |+|=-.-+....+.++|.+|--||..=-..-.---..||.++..||
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qhvP---TlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvd 96 (193)
T KOG0077 20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQHVP---TLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVD 96 (193)
T ss_pred CCEEEEEEECCCCHHHHHHHHCCCCCCCCCC---CCCCCHHHHEECCCEEEEECCCCHHHHHHHHHHHHHHHCEEEEEEE
T ss_conf 7518999515775266898873300113578---7689767731357158997256679999888878765431685301
Q ss_pred C-CCCCCHHHHHHHHHHH----HCCCCEEEECCCCCCCCCCCC
Q ss_conf 3-6674023577789899----709941561233124433200
Q gi|254780787|r 463 A-DEEIMPQAIESINHAK----AADVSIIVAINKIDKLGADPQ 500 (884)
Q Consensus 463 ~-~~g~~~qt~e~~~~~~----~~~~p~iva~nk~d~~~~~~~ 500 (884)
+ +.......++.+..+- -+.+|++|..||||++++-.+
T Consensus 97 a~d~er~~es~~el~~ll~~e~la~vp~lilgnKId~~~a~se 139 (193)
T KOG0077 97 AYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASE 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCH
T ss_conf 1217776778999998876887715861011165568873337
No 262
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=98.15 E-value=5.1e-06 Score=59.15 Aligned_cols=80 Identities=19% Similarity=0.399 Sum_probs=71.1
Q ss_pred EEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHCCHHHHHHHCCCEEEEEEECC--EEEEEC
Q ss_conf 899978873389870789998521784698079966998998226257664460066872797669997284--110058
Q gi|254780787|r 792 NAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRFKDEVSEVHAGQDCGMAFEKY--DNIQAG 869 (884)
Q Consensus 792 ~a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~~--~~~~~g 869 (884)
+.-|-.+|.++..|.|+--+|..|+|+.|..+.++-.+.. .+|.||+.+.+++.++..|+.|||.|.|. ++++-|
T Consensus 6 RmpId~vf~i~G~GtVvtG~v~~G~i~~gd~v~i~P~~~~---~~VksI~~~~~~~~~a~aGd~v~l~L~gi~~~~i~rG 82 (91)
T cd03693 6 RLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVT---GEVKSVEMHHEPLEEALPGDNVGFNVKNVSKKDIKRG 82 (91)
T ss_pred EEEEEEEEECCCCEEEEEEEEEECEEECCCEEEECCCCCE---EEEEEEEECCCCCCEECCCCEEEEEECCCCHHHCCCC
T ss_conf 8899889972995699999981177857999772786433---7999999988495888899899999879989992676
Q ss_pred CEEEE
Q ss_conf 98999
Q gi|254780787|r 870 DMIEC 874 (884)
Q Consensus 870 D~i~~ 874 (884)
|+|=.
T Consensus 83 ~Vl~~ 87 (91)
T cd03693 83 DVAGD 87 (91)
T ss_pred CEEEC
T ss_conf 89955
No 263
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=98.11 E-value=9.5e-06 Score=57.27 Aligned_cols=80 Identities=16% Similarity=0.437 Sum_probs=67.9
Q ss_pred EEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHCCHHHHHHHCCCEEEEEEECC--EEEEECC
Q ss_conf 99978873389870789998521784698079966998998226257664460066872797669997284--1100589
Q gi|254780787|r 793 AEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRFKDEVSEVHAGQDCGMAFEKY--DNIQAGD 870 (884)
Q Consensus 793 a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~~--~~~~~gD 870 (884)
.-|-.+|.++..|+|+--+|..|+|+.|..+.++-.+.. ...+|.||+.++++|.++..|+.|||.|.|. ++++-||
T Consensus 3 m~Id~~f~v~G~GtVvtGtv~~G~i~~gd~v~i~~~~~~-~~~~V~sIq~~~~~v~~a~aG~rv~l~l~gi~~~~i~rG~ 81 (87)
T cd03697 3 MPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGET-LKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKREDVERGM 81 (87)
T ss_pred EEEEEEEECCCEEEEEEEEECCCCEECCCEEEEECCCCC-CEEEEEEEHHCCCCCCCCCCCCEEEEEECCCCHHHCCCCC
T ss_conf 368169966986899999955260847999999728997-1899999087194335379867999998588889837703
Q ss_pred EEE
Q ss_conf 899
Q gi|254780787|r 871 MIE 873 (884)
Q Consensus 871 ~i~ 873 (884)
+|-
T Consensus 82 vl~ 84 (87)
T cd03697 82 VLA 84 (87)
T ss_pred EEE
T ss_conf 994
No 264
>pfam04760 IF2_N Translation initiation factor IF-2, N-terminal region. This conserved feature at the N-terminus of bacterial translation initiation factor IF2 has recently had its structure solved. It shows structural similarity to the tRNA anticodon Stem Contact Fold domains of the methionyl-tRNA and glutaminyl-tRNA synthetases, and a similar fold is also found in the B5 domain of the phenylalanine-tRNA synthetase.
Probab=98.09 E-value=2e-06 Score=61.85 Aligned_cols=52 Identities=31% Similarity=0.498 Sum_probs=49.0
Q ss_pred CCCCCHHHHHHHHHHHCCHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 1111000012222221001345553024000234455356677666541011
Q gi|254780787|r 305 PETITIQELSQRMSERSADVIKFLMKEGQIMKPGDVIDADLSEIIANEFGNT 356 (884)
Q Consensus 305 pE~itv~ELA~~m~~~~~evik~l~~~G~~~t~nq~lD~etaelva~E~g~e 356 (884)
++.++|.|||..++.+..++++.||.+|++++.||.||.|++++++.+||++
T Consensus 1 ~~~itV~elA~~l~~~~~~vi~~L~~~Gi~~~~n~~ld~e~a~~i~~~~~~~ 52 (52)
T pfam04760 1 MEKIRVYELAKELGVSSKELIKKLFKLGIMKTHNSTLDEETAELLAEEFGVE 52 (52)
T ss_pred CCCEEHHHHHHHHCCCHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHCCC
T ss_conf 9817399999998888999999999879855677745999999999981989
No 265
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.08 E-value=3.6e-05 Score=53.30 Aligned_cols=146 Identities=26% Similarity=0.303 Sum_probs=99.3
Q ss_pred EEEEECCCCCHHHHHHHHHH--HHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCH-----------HHHHHHHHHHHH
Q ss_conf 89862368504467778864--22210012310001214999517843888851661-----------578999866642
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRK--ADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGH-----------AAFYEMRARGAR 452 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~--~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh-----------~~f~~~r~rg~~ 452 (884)
|-++|-=+.||+|||-++.+ ..+++...-.++-++|...+ .....+++-|-||- -.|..-..|
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER--- 237 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIER--- 237 (369)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEE-CCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHH---
T ss_conf 141258988579899888606885448865302475307996-4886079934753235644688763888878886---
Q ss_pred CCCCEEEEEECCCC--CCH-HHHHHHH-HHHH-----CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEE
Q ss_conf 06805999983667--402-3577789-8997-----0994156123312443320002210000132000123474036
Q gi|254780787|r 453 VTDIAVLVLAADEE--IMP-QAIESIN-HAKA-----ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDV 523 (884)
Q Consensus 453 ~~d~~ilvv~~~~g--~~~-qt~e~~~-~~~~-----~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (884)
|-+.+.|||+..- ..| +..+.|. -+.+ .+-|.||++||||.+..... ...+..... ...+.....
T Consensus 238 -t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~--~~~~~~~l~---~~~~~~~~~ 311 (369)
T COG0536 238 -TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEE--LEELKKALA---EALGWEVFY 311 (369)
T ss_pred -HHEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCHHHCCCCEEEEEECCCCCCCHHH--HHHHHHHHH---HHCCCCCCE
T ss_conf -51547998567656779899999999999985777535856999855577667899--999999998---740887631
Q ss_pred EEEECCCCCCCCCCCCHH
Q ss_conf 311002477411221000
Q gi|254780787|r 524 EISAKNNLNLDKLLDAIL 541 (884)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~ 541 (884)
++|+.++++++.|+..+.
T Consensus 312 ~ISa~t~~g~~~L~~~~~ 329 (369)
T COG0536 312 LISALTREGLDELLRALA 329 (369)
T ss_pred EEEHHCCCCHHHHHHHHH
T ss_conf 554310248799999999
No 266
>KOG0084 consensus
Probab=98.07 E-value=3.4e-05 Score=53.53 Aligned_cols=144 Identities=21% Similarity=0.284 Sum_probs=98.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCC--CCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 89862368504467778864222100123--1000121499951784388885166157899986664206805999983
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIG--GITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~g--gitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
+-|+|.-+.|||-||.+...-...+.--- |+-=.+....+.....++.+-||-|.+.|-.+...--.-++.+|+|.|+
T Consensus 12 iiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDi 91 (205)
T KOG0084 12 IILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDI 91 (205)
T ss_pred EEEECCCCCCHHHHHHHHCCCCCCHHHCCEEEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 99987789676355566626985333232312678898755526488887666365377755547661678759999976
Q ss_pred CCCCCHHHHHHHHHHH----------HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCE-EEEEEECCCCC
Q ss_conf 6674023577789899----------709941561233124433200022100001320001234740-36311002477
Q gi|254780787|r 464 DEEIMPQAIESINHAK----------AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDIL-DVEISAKNNLN 532 (884)
Q Consensus 464 ~~g~~~qt~e~~~~~~----------~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 532 (884)
.+ .++++-++ ..++|.+.+-||.|+...+.-..... + .+.... +.+ +.++||+...+
T Consensus 92 T~------~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a--~--~fa~~~--~~~~f~ETSAK~~~N 159 (205)
T KOG0084 92 TK------QESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEA--Q--EFADEL--GIPIFLETSAKDSTN 159 (205)
T ss_pred CC------HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHCCCCHHHH--H--HHHHHC--CCCCEEECCCCCCCC
T ss_conf 55------77765488999986652467787688862455186400179999--9--998642--983035504687547
Q ss_pred CCCCCCCHH
Q ss_conf 411221000
Q gi|254780787|r 533 LDKLLDAIL 541 (884)
Q Consensus 533 ~~~~~~~~~ 541 (884)
+++.+..+.
T Consensus 160 Ve~~F~~la 168 (205)
T KOG0084 160 VEDAFLTLA 168 (205)
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 267
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=2.8e-05 Score=54.10 Aligned_cols=107 Identities=22% Similarity=0.325 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHCC-CEEEEEEEEEEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHC
Q ss_conf 267899999999963069-4047888878999788733898707899985217846980799669989982262576644
Q gi|254780787|r 765 IIYDLLDSIKDSMSELLS-PEIRETFLGNAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRF 843 (884)
Q Consensus 765 IIY~L~d~~~~~~~~~l~-~~~~~~~~g~a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~ 843 (884)
..-+=|+++++++..+++ ++..+.-..+.-|=.+|..+..|+|+=-.|.+|+++-|-.+.+.--|+.+ +|.||+.+
T Consensus 145 ~~g~Gi~~Lk~~l~~L~~~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~~k~v---~VRsIq~~ 221 (447)
T COG3276 145 KTGRGIEELKNELIDLLEEIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPINKEV---RVRSIQAH 221 (447)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEEECCEEEEECCCCEE---EEEEEEEC
T ss_conf 257877999999987520055404786599975579951331799867864358878889990589768---99863206
Q ss_pred CHHHHHHHCCCEEEEEEECC--EEEEECCEEEE
Q ss_conf 60066872797669997284--11005898999
Q gi|254780787|r 844 KDEVSEVHAGQDCGMAFEKY--DNIQAGDMIEC 874 (884)
Q Consensus 844 k~~v~ev~~g~ecgi~~~~~--~~~~~gD~i~~ 874 (884)
..|++++..|+-||+.+.|- .+++=||+|-.
T Consensus 222 d~d~~~a~AG~RVglaL~~v~~eei~RG~~L~~ 254 (447)
T COG3276 222 DVDVEEAKAGQRVGLALKGVEKEEIERGDWLLK 254 (447)
T ss_pred CCCHHHCCCCCEEEEECCCCCHHHHHCCCEECC
T ss_conf 864555012251454237887788511227515
No 268
>PTZ00336 elongation factor 1-alpha; Provisional
Probab=98.02 E-value=9.8e-05 Score=50.34 Aligned_cols=88 Identities=16% Similarity=0.329 Sum_probs=73.2
Q ss_pred CEEEEEEEEEEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHCCHHHHHHHCCCEEEEEEEC
Q ss_conf 40478888789997887338987078999852178469807996699899822625766446006687279766999728
Q gi|254780787|r 783 PEIRETFLGNAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRFKDEVSEVHAGQDCGMAFEK 862 (884)
Q Consensus 783 ~~~~~~~~g~a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~ 862 (884)
|.....-.-+.-|..+|+....|.|+--+|..|.|+.|..|.++-.+.. .+|+||..+..+|.++..|+-|||.+.+
T Consensus 226 ~~r~~~~p~r~pV~~vf~~~g~gtvv~G~V~sG~v~~Gd~V~i~Ps~~~---~~VksI~~~~~~v~~A~aG~~V~i~L~~ 302 (449)
T PTZ00336 226 PVRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGIMKPGDVVTFAPANVT---TEVKSIEMHHEQLAEAQPGDNVGFNVKN 302 (449)
T ss_pred CCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCCEEEECCCCCE---EEEEEEEECCCEECEECCCCEEEEECCC
T ss_conf 8775667642340107732788318889994363058999999179987---9998999899385967799847892488
Q ss_pred C--EEEEECCEEE
Q ss_conf 4--1100589899
Q gi|254780787|r 863 Y--DNIQAGDMIE 873 (884)
Q Consensus 863 ~--~~~~~gD~i~ 873 (884)
- .|+.-||+|-
T Consensus 303 i~~~dI~rGdVl~ 315 (449)
T PTZ00336 303 VSVKDIRRGNVCG 315 (449)
T ss_pred CCHHCCCCCCEEE
T ss_conf 7353078863996
No 269
>KOG0073 consensus
Probab=98.00 E-value=8.3e-05 Score=50.82 Aligned_cols=149 Identities=19% Similarity=0.247 Sum_probs=102.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCE--EEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 38986236850446777886422210012310001214--9995178438888516615789998666420680599998
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGA--YQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLA 462 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga--~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~ 462 (884)
=|-|+|-=+.|||||+.++.+-.+- +|---.|. ..+..++..+++-|.-|...|-+.=..=-.-+|..|.|||
T Consensus 18 riLiLGLdNsGKTti~~kl~~~~~~-----~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvD 92 (185)
T KOG0073 18 RILILGLDNSGKTTIVKKLLGEDTD-----TISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVD 92 (185)
T ss_pred EEEEEECCCCCCHHHHHHHCCCCCC-----CCCCCCCEEEEEEEECCEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEE
T ss_conf 7999912789824489885389822-----32872113557877424289999748853368788776650472899997
Q ss_pred CCCCC-CHHHHHHHHHH----HHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 36674-02357778989----97099415612331244332000221000013200012347403631100247741122
Q gi|254780787|r 463 ADEEI-MPQAIESINHA----KAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLL 537 (884)
Q Consensus 463 ~~~g~-~~qt~e~~~~~----~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (884)
.-|-. |.++...+..+ +-++.|.+|..||.|.+++-........+...... -.-+...+.+|+++|+++..++
T Consensus 93 ssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~--ks~~~~l~~cs~~tge~l~~gi 170 (185)
T KOG0073 93 SSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELA--KSHHWRLVKCSAVTGEDLLEGI 170 (185)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHCHHHHC--CCCCCEEEEEECCCCCCHHHHH
T ss_conf 72088899999999999756543488439997347685524787888764778761--3367228998545456478888
Q ss_pred CCH
Q ss_conf 100
Q gi|254780787|r 538 DAI 540 (884)
Q Consensus 538 ~~~ 540 (884)
.-+
T Consensus 171 dWL 173 (185)
T KOG0073 171 DWL 173 (185)
T ss_pred HHH
T ss_conf 999
No 270
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=97.97 E-value=1.5e-05 Score=55.94 Aligned_cols=78 Identities=21% Similarity=0.399 Sum_probs=69.9
Q ss_pred EEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHCCHHHHHHHCCCEEEEEEECC--EEEEECC
Q ss_conf 99978873389870789998521784698079966998998226257664460066872797669997284--1100589
Q gi|254780787|r 793 AEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRFKDEVSEVHAGQDCGMAFEKY--DNIQAGD 870 (884)
Q Consensus 793 a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~~--~~~~~gD 870 (884)
.-|-.+|.++..|.|+--.|..|.|+.|..+.++-.++.+ +|+||+.+++++..+..|+-|||.|.|. .|++-||
T Consensus 3 ~~Id~~F~i~G~GtVvtGtv~sG~i~~gd~l~i~P~~~~~---~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~di~rG~ 79 (83)
T cd03696 3 LPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEET---RVRSIQVHGKDVEEAKAGDRVALNLTGVDAKDLERGD 79 (83)
T ss_pred EEEEEEEECCCCEEEEEEEECCCCCCCCCEEEECCCCCEE---EEEEEEECCCEECEECCCCEEEEEEECCCHHHCCCCC
T ss_conf 4886899818957999999967985699999997877338---9999998995968897998799997589767358678
Q ss_pred EEE
Q ss_conf 899
Q gi|254780787|r 871 MIE 873 (884)
Q Consensus 871 ~i~ 873 (884)
+|-
T Consensus 80 vl~ 82 (83)
T cd03696 80 VLS 82 (83)
T ss_pred EEE
T ss_conf 991
No 271
>CHL00071 tufA elongation factor Tu
Probab=97.94 E-value=2.3e-05 Score=54.71 Aligned_cols=107 Identities=23% Similarity=0.442 Sum_probs=81.1
Q ss_pred EEEEHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEE--ECCEEEEEEEEH
Q ss_conf 975026789999999996306940478888789997887338987078999852178469807996--699899822625
Q gi|254780787|r 761 LYYKIIYDLLDSIKDSMSELLSPEIRETFLGNAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLI--RNSTVIYEGKLK 838 (884)
Q Consensus 761 ~~~~IIY~L~d~~~~~~~~~l~~~~~~~~~g~a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~--r~~~~i~~g~i~ 838 (884)
..|+-++.|++.+..++. .|.....-.-+.-|-.+|..+..|.|+.-+|..|+|+.|..+.++ .++.. .+|.
T Consensus 194 ~w~~~~~~Ll~~l~~~~p---~~~r~~~~p~r~~Id~vf~v~G~GtVv~G~v~sG~v~~Gd~v~i~~~~~~~~---~~Vk 267 (409)
T CHL00071 194 KWVDKIYNLMDAVDSYIP---TPERDTDKPFLMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRETRT---TTVT 267 (409)
T ss_pred CHHHHHHHHHHHHHHCCC---CCCCCCCCCEEEEECCEEECCCCEEEEEEEEEECCCCCCCEEEEEECCCCCE---EEEE
T ss_conf 124479999998872377---8888767760644221475389788999999145634999899997699860---7999
Q ss_pred HHHHCCHHHHHHHCCCEEEEEEEC--CEEEEECCEEE
Q ss_conf 766446006687279766999728--41100589899
Q gi|254780787|r 839 TLKRFKDEVSEVHAGQDCGMAFEK--YDNIQAGDMIE 873 (884)
Q Consensus 839 sl~~~k~~v~ev~~g~ecgi~~~~--~~~~~~gD~i~ 873 (884)
||+.+..+++++..|+.|++.+.| .++++-||+|-
T Consensus 268 sI~~~~~~~~~a~aG~~v~l~L~gi~~~~I~rG~VL~ 304 (409)
T CHL00071 268 GLEMFQKTLDEGLAGDNVGILLRGIQKEDIERGMVLA 304 (409)
T ss_pred EEEECCCCCCEECCCCEEEEEECCCCHHHCCCEEEEE
T ss_conf 9998895988887998899997599878877468996
No 272
>PTZ00141 elongation factor 1 alpha; Provisional
Probab=97.93 E-value=2.4e-05 Score=54.54 Aligned_cols=81 Identities=16% Similarity=0.310 Sum_probs=71.6
Q ss_pred EEEEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHCCHHHHHHHCCCEEEEEEEC--CEEEE
Q ss_conf 8789997887338987078999852178469807996699899822625766446006687279766999728--41100
Q gi|254780787|r 790 LGNAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRFKDEVSEVHAGQDCGMAFEK--YDNIQ 867 (884)
Q Consensus 790 ~g~a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~--~~~~~ 867 (884)
.-+.-|..+|+.+..|.|+--+|..|+|+.|..+.++-.+.. .+|+||+.+..+|.++..|+-|+|.+.+ ..|+.
T Consensus 231 p~r~pI~~v~~~~g~gtvv~G~V~sG~i~~Gd~v~i~Ps~~~---~~VksI~~~~~~v~~A~aG~~V~i~L~~i~~~dI~ 307 (443)
T PTZ00141 231 PLRLPLQGVYKIGGIGTVPVGRVETGILKAGMVLTFAPSAVT---TECKSVEMHHEVVEEARPGDNVGFNVKNVSTKDIK 307 (443)
T ss_pred CCCCCEEEEEEECCCCEEEEEEEEEEEEECCCEEEECCCCCE---EEEEEEEECCCEECEECCCCEEEEECCCCCHHHCC
T ss_conf 653405038861687327876761569956978998779988---99989998996908786998379945898653027
Q ss_pred ECCEEE
Q ss_conf 589899
Q gi|254780787|r 868 AGDMIE 873 (884)
Q Consensus 868 ~gD~i~ 873 (884)
-||+|-
T Consensus 308 rG~Vl~ 313 (443)
T PTZ00141 308 RGHVAS 313 (443)
T ss_pred CCEEEE
T ss_conf 861976
No 273
>KOG1954 consensus
Probab=97.92 E-value=8e-05 Score=50.94 Aligned_cols=107 Identities=24% Similarity=0.390 Sum_probs=82.2
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCE-----EEE----------------------EC-------
Q ss_conf 53038986236850446777886422210012310001214-----999----------------------51-------
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGA-----YQV----------------------AY------- 427 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga-----~~~----------------------~~------- 427 (884)
--|.|-+||.-.+||||.+-+|....... -+||+ +++ |+
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg-------~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG 129 (532)
T KOG1954 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPG-------LRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFG 129 (532)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCCCC-------CCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCHHHHHHHH
T ss_conf 68448997246666039999987177875-------54689997530689985586566678625646877516566667
Q ss_pred ------------C---CCEEEEEECCCHHH-----------HHHHHHHHHHCCCCEEEEEECCC-CCCHHHHHHHHHHHH
Q ss_conf ------------7---84388885166157-----------89998666420680599998366-740235777898997
Q gi|254780787|r 428 ------------Q---GKNITFLDTPGHAA-----------FYEMRARGARVTDIAVLVLAADE-EIMPQAIESINHAKA 480 (884)
Q Consensus 428 ------------~---~~~~~~iDtPGh~~-----------f~~~r~rg~~~~d~~ilvv~~~~-g~~~qt~e~~~~~~~ 480 (884)
+ --.++||||||-=+ |+.-..-=+.-||++||+.|+-. -|.+.+.++|..++-
T Consensus 130 ~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG 209 (532)
T KOG1954 130 NAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG 209 (532)
T ss_pred HHHHHHHHHHCCCHHHHHHEEEECCCCCCCCCHHCCCCCCCHHHHHHHHHHHCCEEEEEECHHHCCCCHHHHHHHHHHHC
T ss_conf 99999887733875655004442367532012220123678088999999745689997246645666789999998618
Q ss_pred CCCCEEEECCCCCCC
Q ss_conf 099415612331244
Q gi|254780787|r 481 ADVSIIVAINKIDKL 495 (884)
Q Consensus 481 ~~~p~iva~nk~d~~ 495 (884)
+.-.+=|+|||-|..
T Consensus 210 ~EdkiRVVLNKADqV 224 (532)
T KOG1954 210 HEDKIRVVLNKADQV 224 (532)
T ss_pred CCCEEEEEECCCCCC
T ss_conf 864068883032443
No 274
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=97.92 E-value=8.3e-05 Score=50.83 Aligned_cols=25 Identities=8% Similarity=0.139 Sum_probs=20.3
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 5530389862368504467778864
Q gi|254780787|r 381 IRPPVVTIMGHVDHGKTSLLDAIRK 405 (884)
Q Consensus 381 ~R~pvv~v~ghvd~GKt~lld~~r~ 405 (884)
.-+|||.|=.+-..|=-.|.+.|..
T Consensus 139 ~~~pi~~vSa~tg~Gi~~L~~~L~~ 163 (615)
T PRK10512 139 AEAKLFVTAATEGRGIDALREHLLQ 163 (615)
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHH
T ss_conf 6797520145666799999999986
No 275
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.90 E-value=9.8e-05 Score=50.35 Aligned_cols=95 Identities=20% Similarity=0.174 Sum_probs=65.8
Q ss_pred CCHHHH-HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf 661578-9998666420680599998366740235777898997099415612331244332000221000013200012
Q gi|254780787|r 438 PGHAAF-YEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESM 516 (884)
Q Consensus 438 PGh~~f-~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~ 516 (884)
|||-+= ..-...-...+|++|.||||-+|+...-.+...+++ +.|+|+++||+|+...+.......+.. .
T Consensus 3 pghm~k~~~~~~~~l~~sDlIl~V~DaR~pl~~~~~~l~~~~~--~K~~ilV~NK~DL~~~~~~~~~~~~~~------~- 73 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILG--NKPRIIVLNKADLADPKKTKKWLKYFE------S- 73 (171)
T ss_pred CHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHC--CCCEEEEEECCCCCCHHHHHHHHHHHH------C-
T ss_conf 5489999999999998699999999898888765289999976--898899985555589789999999998------0-
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCHHC
Q ss_conf 34740363110024774112210000
Q gi|254780787|r 517 GGDILDVEISAKNNLNLDKLLDAILL 542 (884)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (884)
+....+.+|+..+.++.+++..+..
T Consensus 74 -~~~~~~~~sa~~~~g~~~l~~~i~~ 98 (171)
T cd01856 74 -KGEKVLFVNAKSGKGVKKLLKAAKK 98 (171)
T ss_pred -CCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf -7996799842266578999999999
No 276
>KOG0094 consensus
Probab=97.89 E-value=0.00021 Score=48.07 Aligned_cols=153 Identities=20% Similarity=0.242 Sum_probs=98.5
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCE----EEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCC
Q ss_conf 553038986236850446777886422210012310001214----9995178438888516615789998666420680
Q gi|254780787|r 381 IRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGA----YQVAYQGKNITFLDTPGHAAFYEMRARGARVTDI 456 (884)
Q Consensus 381 ~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga----~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~ 456 (884)
+|.-=+.+||.-.-|||+|+-..+.-.....= .-|+-|.+ +++.--..++.+-||-|.|.|-.|...=..-++.
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~Y--qATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~v 97 (221)
T KOG0094 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTY--QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 97 (221)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHHHHCCCC--CCEEEEEEEEEEEEECCCEEEEEEEECCCHHHHHHHHHHHCCCCEE
T ss_conf 30778999866765447888899876304645--6546567778889973817899987544678775310555038737
Q ss_pred EEEEEECCCC-CCHHHHHHHHHHH-HCCC--CEEEEC-CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 5999983667-4023577789899-7099--415612-331244332000221000013200012347403631100247
Q gi|254780787|r 457 AVLVLAADEE-IMPQAIESINHAK-AADV--SIIVAI-NKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNL 531 (884)
Q Consensus 457 ~ilvv~~~~g-~~~qt~e~~~~~~-~~~~--p~iva~-nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (884)
||+|.|+.+- --.+|.-=|+-++ ..+. ++|+.+ ||-|+... ..+-.+ +-.....+++. .++.+||+.|.
T Consensus 98 aviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk--rqvs~e--Eg~~kAkel~a--~f~etsak~g~ 171 (221)
T KOG0094 98 AVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK--RQVSIE--EGERKAKELNA--EFIETSAKAGE 171 (221)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCH--HHHHHH--HHHHHHHHHCC--EEEEECCCCCC
T ss_conf 9999963564017769999999986068886599997163124446--565388--78988987295--89983044799
Q ss_pred CCCCCCCCHH
Q ss_conf 7411221000
Q gi|254780787|r 532 NLDKLLDAIL 541 (884)
Q Consensus 532 ~~~~~~~~~~ 541 (884)
|+..|+..|.
T Consensus 172 NVk~lFrrIa 181 (221)
T KOG0094 172 NVKQLFRRIA 181 (221)
T ss_pred CHHHHHHHHH
T ss_conf 8899999999
No 277
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=97.87 E-value=3.8e-05 Score=53.19 Aligned_cols=78 Identities=18% Similarity=0.347 Sum_probs=68.9
Q ss_pred EEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHCCHHHHHHHCCCEEEEEEEC--CEEEEEC
Q ss_conf 89997887338987078999852178469807996699899822625766446006687279766999728--4110058
Q gi|254780787|r 792 NAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRFKDEVSEVHAGQDCGMAFEK--YDNIQAG 869 (884)
Q Consensus 792 ~a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~--~~~~~~g 869 (884)
+.-|..+|+... |.++.-+|..|.|+.|..+.++=.+.. .+|+||+.+.++++++..|+.|+|.|.| .+|+.-|
T Consensus 3 R~pI~~v~~~~g-G~vv~G~v~sG~i~~Gd~v~i~P~~~~---~~VksI~~~~~~~~~A~aG~~V~l~L~gid~~~i~rG 78 (83)
T cd03698 3 RLPISDKYKDQG-GTVVSGKVESGSIQKGDTLLVMPSKES---VEVKSIYVDDEEVDYAVAGENVRLKLKGIDEEDISPG 78 (83)
T ss_pred EEEEEEEEECCC-CCEEEEEEEECEECCCCEEEEECCCCE---EEEEEEEECCEEECEECCCCEEEEEECCCCHHHCCCC
T ss_conf 989974798699-739999990258728999999789988---9999999999172988899979999848989994798
Q ss_pred CEEE
Q ss_conf 9899
Q gi|254780787|r 870 DMIE 873 (884)
Q Consensus 870 D~i~ 873 (884)
|+|=
T Consensus 79 ~vlc 82 (83)
T cd03698 79 DVLC 82 (83)
T ss_pred CEEE
T ss_conf 8994
No 278
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.87 E-value=3.8e-05 Score=53.14 Aligned_cols=92 Identities=20% Similarity=0.161 Sum_probs=67.6
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEE
Q ss_conf 89998666420680599998366740235777898997099415612331244332000221000013200012347403
Q gi|254780787|r 443 FYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILD 522 (884)
Q Consensus 443 f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (884)
|-.+..+-..-+|++|.||||-+|+.+--.+..+++++.+.|+|+++||+|....+...... .. ... .....
T Consensus 2 ~rr~i~~~i~~~D~il~VvDar~p~~~~~~~l~~~l~~~~K~~ilvlNK~Dl~~~~~~~~~~---~~---~~~--~g~~~ 73 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWK---SI---KES--EGIPV 73 (156)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH---HH---HHC--CCCCE
T ss_conf 78999999987999999998788999869899999975699399997755558989999999---99---828--99973
Q ss_pred EEEEECCCCCCCCCCCCHHC
Q ss_conf 63110024774112210000
Q gi|254780787|r 523 VEISAKNNLNLDKLLDAILL 542 (884)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~ 542 (884)
+.+|+..+.|+..|++.+..
T Consensus 74 i~iSa~~~~g~~~L~~~i~~ 93 (156)
T cd01859 74 VYVSAKERLGTKILRRTIKE 93 (156)
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 78701267579999999998
No 279
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.81 E-value=3.3e-05 Score=53.59 Aligned_cols=133 Identities=23% Similarity=0.285 Sum_probs=92.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCH----HHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8986236850446777886422210012310001214999517843888851661----578999866642068059999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGH----AAFYEMRARGARVTDIAVLVL 461 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh----~~f~~~r~rg~~~~d~~ilvv 461 (884)
+.++|-|--|||||.-+|++..+-..- ||.+ ++.. --.|||||- -.+-.--.--+.=.|+.++|-
T Consensus 4 i~~vG~~gcGKTtL~q~L~G~~~lykK----TQAv-----e~~d--~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~ 72 (148)
T COG4917 4 IAFVGQVGCGKTTLFQSLYGNDTLYKK----TQAV-----EFND--KGDIDTPGEYFEHPRWYHALITTLQDADVIIYVH 72 (148)
T ss_pred EEEECCCCCCCHHHHHHHHCCHHHHCC----CCEE-----ECCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 687514565731678886160332100----0013-----3047--5565880666524678999988761133255430
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC-CCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCH
Q ss_conf 8366740235777898997099415612331244-332000221000013200012347403631100247741122100
Q gi|254780787|r 462 AADEEIMPQAIESINHAKAADVSIIVAINKIDKL-GADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAI 540 (884)
Q Consensus 462 ~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (884)
+++|+-. ..+-.++.-..-|.|=+++|+|++ .++...+...|.+.+ ....+.+|+..-.|+++|+..+
T Consensus 73 ~and~~s---~f~p~f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG--------a~~iF~~s~~d~~gv~~l~~~L 141 (148)
T COG4917 73 AANDPES---RFPPGFLDIGVKKVIGVVTKADLAEDADISLVKRWLREAG--------AEPIFETSAVDNQGVEELVDYL 141 (148)
T ss_pred CCCCCCC---CCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCC--------CCCEEEEECCCCCCHHHHHHHH
T ss_conf 0268444---4884213446665589986034664676899999999748--------7526887255831199999999
No 280
>KOG0395 consensus
Probab=97.81 E-value=4.9e-05 Score=52.42 Aligned_cols=153 Identities=25% Similarity=0.188 Sum_probs=95.8
Q ss_pred CCEEEEEECCCCCHHHHHHHHHH-HHHHHCCCCCC-EECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 30389862368504467778864-22210012310-00121499951784388885166157899986664206805999
Q gi|254780787|r 383 PPVVTIMGHVDHGKTSLLDAIRK-ADVAKGEIGGI-TQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 383 ~pvv~v~ghvd~GKt~lld~~r~-~~~~~~e~ggi-tq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
..=|.|+|.=--|||.|.=.... ..+-.... -| ++.--...+......+.|+||+|-+.|+.||..-..-.|.-+||
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~p-tied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDP-TIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CEEEEEECCCCCCCCCEEEEECCCCCCCCCCC-CCCCCEEEEEEECCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEE
T ss_conf 14799977898885305789635755443479-76763159999899788999982888534768888775548689999
Q ss_pred EECCCCCCH----HHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 983667402----3577789899-70994156123312443320002210000132000123474036311002477411
Q gi|254780787|r 461 LAADEEIMP----QAIESINHAK-AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDK 535 (884)
Q Consensus 461 v~~~~g~~~----qt~e~~~~~~-~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (884)
.++++=-.= +..+.|...+ ...+|+|++-||+|+.... .+..+. .......| ...++.+||....++++
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R--~V~~ee--g~~la~~~--~~~f~E~Sak~~~~v~~ 155 (196)
T KOG0395 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERER--QVSEEE--GKALARSW--GCAFIETSAKLNYNVDE 155 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHC--CCCHHH--HHHHHHHH--CCCEEEEECCCCCCHHH
T ss_conf 9898888999999999999864076778879998855532304--243999--99999970--99679975144758899
Q ss_pred CCCCHHC
Q ss_conf 2210000
Q gi|254780787|r 536 LLDAILL 542 (884)
Q Consensus 536 ~~~~~~~ 542 (884)
++..+..
T Consensus 156 ~F~~L~r 162 (196)
T KOG0395 156 VFYELVR 162 (196)
T ss_pred HHHHHHH
T ss_conf 9999999
No 281
>PRK13768 GTPase; Provisional
Probab=97.76 E-value=5.7e-05 Score=51.97 Aligned_cols=154 Identities=19% Similarity=0.229 Sum_probs=89.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCC--EEEEEC-----------------------------------
Q ss_conf 3898623685044677788642221001231000121--499951-----------------------------------
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIG--AYQVAY----------------------------------- 427 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~ig--a~~~~~----------------------------------- 427 (884)
++.|+|-=-.||||+...+..--...+-. ..+.++- +-++|.
T Consensus 4 ~~~ViGpaGSGKsT~~~~l~~~l~~~~r~-~~vvNLDPA~e~~pY~~~iDIRd~i~~~dVM~~~~LGPNGali~~~e~l~ 82 (253)
T PRK13768 4 IVFFLGTAGSGKTTLVGALSDWLEEQGYD-VAIVNLDPAVEYLPYKPDIDVREYVSAREIMRKYGLGPNGALIASVDLLL 82 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 89998999998899999999999976997-59997898665899998863786178999998819896468999999999
Q ss_pred ------------CCCEEEEEECCCH------H-HHHHHHH---HHHHCCCCEEEEEECCCCCCHHH-----HHHHHHHHH
Q ss_conf ------------7843888851661------5-7899986---66420680599998366740235-----777898997
Q gi|254780787|r 428 ------------QGKNITFLDTPGH------A-AFYEMRA---RGARVTDIAVLVLAADEEIMPQA-----IESINHAKA 480 (884)
Q Consensus 428 ------------~~~~~~~iDtPGh------~-~f~~~r~---rg~~~~d~~ilvv~~~~g~~~qt-----~e~~~~~~~ 480 (884)
......++||||. . +...+.. ++..+ .++.+||+..=..|.+ .-++...-.
T Consensus 83 ~~~d~l~~~i~~~~~dY~i~D~PGQiElft~~~~~~~i~~~L~~~~~~--~~v~l~D~~~~~~~~~fiS~~L~a~s~m~~ 160 (253)
T PRK13768 83 TKAEEIKEEIERLDADYVLVDTPGQMELFAFRESGRYLVEKLSSGSKS--LSVYLIDAVLAKDPSDFVSLLLLALSVQLR 160 (253)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCEEEEECCHHHHHHHHHHHCCCCE--EEEEEECHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 989999999851588759982687443222340799999998636862--899984505637887999999999999997
Q ss_pred CCCCEEEECCCCCCCCC--------CCCHHH---HHH-----------HCCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 09941561233124433--------200022---100-----------00132000123474036311002477411221
Q gi|254780787|r 481 ADVSIIVAINKIDKLGA--------DPQKVR---MSL-----------LKHDVFVESMGGDILDVEISAKNNLNLDKLLD 538 (884)
Q Consensus 481 ~~~p~iva~nk~d~~~~--------~~~~~~---~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (884)
.++|+|.++||+|.... |..... ..+ ........+.+....++|+|+.+++|+++++.
T Consensus 161 l~lP~inVlsK~Dll~~~~~~~i~~~~~D~~~l~~~l~~~~~~~~~l~~~l~~~l~e~~~~v~~ipvS~~~~eg~~~l~~ 240 (253)
T PRK13768 161 LGLPQIPVLNKIDLLSEEELERIRKWLEDPETLLEELKLDKGVQGDLAEELLSALEESGIPVRVIPVSAKTGEGFEELYA 240 (253)
T ss_pred CCCCEEEEEEHHHCCCHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
T ss_conf 39997998676862783779999998629999999985061158999999999999846666527756898787999999
Q ss_pred CHH
Q ss_conf 000
Q gi|254780787|r 539 AIL 541 (884)
Q Consensus 539 ~~~ 541 (884)
.+.
T Consensus 241 ~I~ 243 (253)
T PRK13768 241 LLQ 243 (253)
T ss_pred HHH
T ss_conf 999
No 282
>pfam03144 GTP_EFTU_D2 Elongation factor Tu domain 2. Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to pfam03143, and in fact has weak sequence matches to this domain.
Probab=97.73 E-value=4.8e-05 Score=52.45 Aligned_cols=67 Identities=27% Similarity=0.518 Sum_probs=58.8
Q ss_pred CCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHCCHHHHHHHCCCEEEEEEEC--CEEEEECCEE
Q ss_conf 7078999852178469807996699899822625766446006687279766999728--4110058989
Q gi|254780787|r 805 GNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRFKDEVSEVHAGQDCGMAFEK--YDNIQAGDMI 872 (884)
Q Consensus 805 ~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~--~~~~~~gD~i 872 (884)
|.++-.+|..|+|+.|..++++.++ ....++|.+|..++..+.++..|..||+.+.. ++|++.||+|
T Consensus 1 G~v~~grv~~G~lk~gd~v~~~~~~-~~~~~kV~~l~~~~~~~~~~~~g~~~g~iv~~~~~~~i~~Gdti 69 (70)
T pfam03144 1 GTVATGRVESGTLKKGDKVVIGPNG-TGKKGRVTSLEMFHGDLREAVAGANAGIILAGIGLKDIKRGDTL 69 (70)
T ss_pred CEEEEEEEEECEEECCCEEEEECCC-CCCCEEEEEEEEECCCHHHHHCCCCCEEEEEECCCCCCCCCCEE
T ss_conf 9599999980989659999993699-62213771899977551221151100037874670457246794
No 283
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=97.68 E-value=6e-05 Score=51.78 Aligned_cols=79 Identities=25% Similarity=0.434 Sum_probs=67.3
Q ss_pred EEEEEEECCCCCCEEEEEEEEEEEECCCEEEEE--ECCEEEEEEEEHHHHHCCHHHHHHHCCCEEEEEEECC--EEEEEC
Q ss_conf 997887338987078999852178469807996--6998998226257664460066872797669997284--110058
Q gi|254780787|r 794 EVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLI--RNSTVIYEGKLKTLKRFKDEVSEVHAGQDCGMAFEKY--DNIQAG 869 (884)
Q Consensus 794 ~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~--r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~~--~~~~~g 869 (884)
-|-.+|.++..|+|+.-.|..|+|+.|..+.+. .+|.- +.-+|.||+++++.+.++..|+.||+.|.+. ++++-|
T Consensus 4 ~ID~vf~v~G~GtVVtGtv~~G~i~~gd~v~i~P~~~G~f-~~v~VrsIq~~~~~v~~a~aG~~~~~~l~~i~~~~i~rG 82 (87)
T cd03694 4 QIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSF-RPVTVKSIHRNRSPVRVVRAGQSASLALKKIDRSLLRKG 82 (87)
T ss_pred CCEEEEECCCEEEEEEEEECCCCCCCCCEEEEECCCCCCE-EEEEEEEEEECCCCCCEECCCCEEEEEECCCCHHHCCCC
T ss_conf 5313798698568989998457153899999921678966-778998899888297897699898899869999990676
Q ss_pred CEEE
Q ss_conf 9899
Q gi|254780787|r 870 DMIE 873 (884)
Q Consensus 870 D~i~ 873 (884)
++|-
T Consensus 83 ~VL~ 86 (87)
T cd03694 83 MVLV 86 (87)
T ss_pred CEEE
T ss_conf 6996
No 284
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=97.67 E-value=0.00032 Score=46.80 Aligned_cols=155 Identities=25% Similarity=0.242 Sum_probs=99.3
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCC-------------CC-----------CEECCCEEEEEC---------
Q ss_conf 553038986236850446777886422210012-------------31-----------000121499951---------
Q gi|254780787|r 381 IRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEI-------------GG-----------ITQHIGAYQVAY--------- 427 (884)
Q Consensus 381 ~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~-------------gg-----------itq~iga~~~~~--------- 427 (884)
-++.+|.|-|-=-.||+||+|.|-..-...|.. || ..++-++|--+.
T Consensus 27 g~a~~iGiTG~PGaGKStli~~l~~~~~~~g~~vaVlAvDPSS~~sgGaiLGDr~RM~~~~~~~~vfiRs~~srg~lGGl 106 (267)
T pfam03308 27 GRAHRVGITGVPGAGKSTLIEALGMELRRRGHRVAVLAVDPSSPFTGGSILGDRTRMQRLAVDPGAFIRSSPSRGALGGL 106 (267)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCC
T ss_conf 99559987689988799999999999996898689999789998888630010777765058998588645778888871
Q ss_pred -------------CCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf -------------7843888851661578999866642068059999836674023577789899709941561233124
Q gi|254780787|r 428 -------------QGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDK 494 (884)
Q Consensus 428 -------------~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~ 494 (884)
-+.-+.||-|-|---=-. --+.++|+.+||....-|=+-|.+-+ =-..+.-|+++||.|+
T Consensus 107 s~~t~~~i~lleaaGfD~IivETVGVGQsE~---~v~~~aD~~llv~~Pg~GDeiQ~iKa----GImEiaDi~vVNKaD~ 179 (267)
T pfam03308 107 SRATREAILLLDAAGFDVIIIETVGVGQSEV---DIANMADTFVLVTIPGGGDDLQGIKA----GLMEIADIYVVNKADL 179 (267)
T ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCCCCCH---HHHHHCCEEEEEECCCCCHHHHHHHH----HHHHHCCEEEEECCCH
T ss_conf 4769999999997799999992477775303---55541576899955887608889875----3765354899966764
Q ss_pred CCCCCCHHHHHHHCCCCC--CCCCCCCCEEEEEEECCCCCCCCCCCCHHCCC
Q ss_conf 433200022100001320--00123474036311002477411221000023
Q gi|254780787|r 495 LGADPQKVRMSLLKHDVF--VESMGGDILDVEISAKNNLNLDKLLDAILLQA 544 (884)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (884)
+.+. +...++...+.+ ....+...+.+.+|+.+++|++++++.+.-+.
T Consensus 180 ~~A~--~~~~~l~~~l~l~~~~~~~W~p~Vl~tSA~~g~Gi~el~~~I~~~~ 229 (267)
T pfam03308 180 PGAE--RTARELRSALHLLTPKEAGWRPPVLTTSAVTGEGIDELWDAIEEHR 229 (267)
T ss_pred HHHH--HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7699--9999999998517987789999989987478899999999999999
No 285
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.64 E-value=0.00032 Score=46.80 Aligned_cols=111 Identities=15% Similarity=0.209 Sum_probs=76.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHH-----HHHCCCCCCEECCCEEEEECCCCEEEEEECCCHH-----HHHHHHHHHHHCCC
Q ss_conf 8986236850446777886422-----2100123100012149995178438888516615-----78999866642068
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKAD-----VAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHA-----AFYEMRARGARVTD 455 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~-----~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~-----~f~~~r~rg~~~~d 455 (884)
|.|.|--..||+|++-+||+-. ++..-.--.|+.+-.|..|.- ..+++.|.||-- .-..+..-+...+|
T Consensus 4 iaVtGesGaGKSSfINAlRGl~~~d~~aA~tGv~eTT~~~~~Y~~p~~-pnv~lwDlPG~Gt~~f~~~~Yl~~~~~~~yD 82 (197)
T cd04104 4 IAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKF-PNVTLWDLPGIGSTAFPPDDYLEEMKFSEYD 82 (197)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCC-CCCEEECCCCCCCCCCCHHHHHHHCCCCCCC
T ss_conf 999558998689999998688988777588888746778620479999-9876972899998765989999865855457
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
Q ss_conf 05999983667402357778989970994156123312443320
Q gi|254780787|r 456 IAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADP 499 (884)
Q Consensus 456 ~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~ 499 (884)
..|+|.| +-+..--+.-+..+...+.+|.++-||+|....+.
T Consensus 83 ~fiiiss--~rf~~nd~~la~~i~~~gK~fyfVRsK~D~dl~n~ 124 (197)
T cd04104 83 FFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNE 124 (197)
T ss_pred EEEEEEC--CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHH
T ss_conf 8999838--86414269999999980992899986121400056
No 286
>TIGR02729 Obg_CgtA GTP-binding protein Obg/CgtA; InterPro: IPR014100 This entry describes a universal, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure..
Probab=97.64 E-value=0.00052 Score=45.40 Aligned_cols=107 Identities=27% Similarity=0.425 Sum_probs=81.8
Q ss_pred EEEEECCCCCHHHHHHHHHH--HHHHHCCCCCCEECCCEEEEECCC--CEEEEEECCCH-----------HHHHHHHHHH
Q ss_conf 89862368504467778864--222100123100012149995178--43888851661-----------5789998666
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRK--ADVAKGEIGGITQHIGAYQVAYQG--KNITFLDTPGH-----------AAFYEMRARG 450 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~--~~~~~~e~ggitq~iga~~~~~~~--~~~~~iDtPGh-----------~~f~~~r~rg 450 (884)
|-++|==+.||+|||.+|.+ ..||+...-.+.=|+|.-++.... ..+++=|=||= -.|-.=..|
T Consensus 161 VGLvGfPNAGKSTLLs~~S~AkPKiAdYPFTTL~P~LGvv~~~~~~Y~~~fviADIPGLIEGAs~G~GLG~~FLKHIER- 239 (296)
T TIGR02729 161 VGLVGFPNAGKSTLLSAISNAKPKIADYPFTTLEPNLGVVRVDDNKYERSFVIADIPGLIEGASEGKGLGHKFLKHIER- 239 (296)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCEECCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCHHHHHCCCCCCHHHHHHHHH-
T ss_conf 2103578874688888876278822387874565311289874874168899985686156662688753355457520-
Q ss_pred HHCCCCEEEEEECCCC-------CCH-HHHHHHHH-HHH-----CCCCEEEECCCCCCCC
Q ss_conf 4206805999983667-------402-35777898-997-----0994156123312443
Q gi|254780787|r 451 ARVTDIAVLVLAADEE-------IMP-QAIESINH-AKA-----ADVSIIVAINKIDKLG 496 (884)
Q Consensus 451 ~~~~d~~ilvv~~~~g-------~~~-qt~e~~~~-~~~-----~~~p~iva~nk~d~~~ 496 (884)
|-+.+.|||+..- -.| +..+.|+. |++ .+-|.|||+||||.+.
T Consensus 240 ---t~~L~hviD~~~~qlSkh~~~~p~~~y~~l~~EL~~Y~~~L~~k~~~iv~NK~Dl~~ 296 (296)
T TIGR02729 240 ---TRLLLHVIDASGIQLSKHDGRDPIEDYETLRNELELYSPELADKPQIIVLNKIDLLD 296 (296)
T ss_pred ---EEEEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHCCCCEEEEEEECCCCC
T ss_conf ---266887980687534242898889999999999975087362780799986067789
No 287
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.63 E-value=0.00034 Score=46.67 Aligned_cols=161 Identities=21% Similarity=0.237 Sum_probs=101.1
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC-------------CC-----------CCEECCCEEEEECC------
Q ss_conf 1255303898623685044677788642221001-------------23-----------10001214999517------
Q gi|254780787|r 379 LDIRPPVVTIMGHVDHGKTSLLDAIRKADVAKGE-------------IG-----------GITQHIGAYQVAYQ------ 428 (884)
Q Consensus 379 ~~~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e-------------~g-----------gitq~iga~~~~~~------ 428 (884)
.--|++||-|-|-=-.||+||+|+|-.--.-.|. .| .++-|=|+|.-+..
T Consensus 47 ~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lG 126 (323)
T COG1703 47 RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLG 126 (323)
T ss_pred CCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCH
T ss_conf 17998378731799886688999999999977967899998899998785301207667764469981784268776510
Q ss_pred ----------------CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf ----------------8438888516615789998666420680599998366740235777898997099415612331
Q gi|254780787|r 429 ----------------GKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKI 492 (884)
Q Consensus 429 ----------------~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~ 492 (884)
+.-+-||-|-|---=-. --+.++|+.++|.-.--|=.-|.+-. -...+--|+||||.
T Consensus 127 GlS~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~----GimEiaDi~vINKa 199 (323)
T COG1703 127 GLSRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKA----GIMEIADIIVINKA 199 (323)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH---HHHHHCCEEEEEECCCCCCHHHHHHH----HHHHHHHEEEEECC
T ss_conf 166889999999986189889998147884155---77652166899965788827888874----14654033567256
Q ss_pred CCCCCCCCHHHHHHHCCCC--CCCCCCCCCEEEEEEECCCCCCCCCCCCHHCCCCC
Q ss_conf 2443320002210000132--00012347403631100247741122100002333
Q gi|254780787|r 493 DKLGADPQKVRMSLLKHDV--FVESMGGDILDVEISAKNNLNLDKLLDAILLQAEM 546 (884)
Q Consensus 493 d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (884)
|+..+......-.++.... ...+.+...+.+.+||..|+|+++|++.+.-+.+.
T Consensus 200 D~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 200 DRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 72658999999999997511454236888864676413577879999999999999
No 288
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=97.63 E-value=0.00014 Score=49.30 Aligned_cols=77 Identities=17% Similarity=0.325 Sum_probs=66.8
Q ss_pred EEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHCCHHHHHHHCCCEEEEEEEC--CEEEEEC
Q ss_conf 89997887338987078999852178469807996699899822625766446006687279766999728--4110058
Q gi|254780787|r 792 NAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRFKDEVSEVHAGQDCGMAFEK--YDNIQAG 869 (884)
Q Consensus 792 ~a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~--~~~~~~g 869 (884)
+.-|..+|+ . .|.++--+|..|.++.|..+.++=.+.. .+|.||..+.++++++..|+.++|.|.| .+|++-|
T Consensus 3 R~pi~dv~k-g-~G~vV~G~vesG~v~~Gd~v~i~P~~~~---~~Vk~I~~~~~~v~~A~aGd~V~l~L~gvd~~~i~rG 77 (82)
T cd04089 3 RLPIIDKYK-D-MGTVVLGKVESGTIKKGDKLLVMPNKTQ---VEVLSIYNEDVEVRYARPGENVRLRLKGIEEEDISPG 77 (82)
T ss_pred EEEEEEEEE-C-CCEEEEEEEEEEEECCCCEEEEECCCCE---EEEEEEEECCEEECEECCCCCEEEEECCCCHHHCCCC
T ss_conf 826878992-8-9889999993677829999999589988---9999999999795888699732688848888844788
Q ss_pred CEEE
Q ss_conf 9899
Q gi|254780787|r 870 DMIE 873 (884)
Q Consensus 870 D~i~ 873 (884)
|+|=
T Consensus 78 ~vlc 81 (82)
T cd04089 78 FVLC 81 (82)
T ss_pred CEEC
T ss_conf 7995
No 289
>KOG0460 consensus
Probab=97.62 E-value=0.00012 Score=49.75 Aligned_cols=104 Identities=18% Similarity=0.371 Sum_probs=84.8
Q ss_pred EHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHC
Q ss_conf 02678999999999630694047888878999788733898707899985217846980799669989982262576644
Q gi|254780787|r 764 KIIYDLLDSIKDSMSELLSPEIRETFLGNAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRF 843 (884)
Q Consensus 764 ~IIY~L~d~~~~~~~~~l~~~~~~~~~g~a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~ 843 (884)
+-||+|+|.+-.|+ ..|......+--.-|-.+|.++.-|+|+--++..|+|++|..+-++-.++.+- -+|.-++.|
T Consensus 231 ~aI~kLldavDsyi---p~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lk-ttvtgiemF 306 (449)
T KOG0460 231 EAIEKLLDAVDSYI---PTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLK-TTVTGIEMF 306 (449)
T ss_pred HHHHHHHHHHHCCC---CCCCCCCCCCCEEEHHHEEEECCCCEEEEEEEEECCCCCCCEEEEECCCCCEE-EEEEHHHHH
T ss_conf 99999999875158---98521357774043002466158834998778502214688789850676404-686269999
Q ss_pred CHHHHHHHCCCEEEEEEECC--EEEEECCE
Q ss_conf 60066872797669997284--11005898
Q gi|254780787|r 844 KDEVSEVHAGQDCGMAFEKY--DNIQAGDM 871 (884)
Q Consensus 844 k~~v~ev~~g~ecgi~~~~~--~~~~~gD~ 871 (884)
++.|.++..|..||..+.+. .|++-|=+
T Consensus 307 ~K~ld~a~AGDn~G~LlRGik~~dvkRGmv 336 (449)
T KOG0460 307 RKSLDEAQAGDNLGALLRGIKREDVKRGMV 336 (449)
T ss_pred HHHHHHCCCCCCEEHHHHCCCHHHHHCCCE
T ss_conf 877775015562016451477878744528
No 290
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=97.61 E-value=0.0002 Score=48.17 Aligned_cols=103 Identities=20% Similarity=0.305 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEEECCCCCC--------EEEEEEEEEEEECCCEEEEEEC------CEEE
Q ss_conf 7899999999963069404788887899978873389870--------7899985217846980799669------9899
Q gi|254780787|r 767 YDLLDSIKDSMSELLSPEIRETFLGNAEVLEVFAVTKLGN--------VAGCKVSEGKVERGSGVRLIRN------STVI 832 (884)
Q Consensus 767 Y~L~d~~~~~~~~~l~~~~~~~~~g~a~v~~vF~~~k~~~--------i~G~~V~~G~i~~~~~~~v~r~------~~~i 832 (884)
..|++.+..++ -.|.....-.-+.-|--+|.+++-|+ |++-.|..|+|+.|..+.+.=. +...
T Consensus 189 ~~L~~~l~~~~---~~p~r~~~~~f~m~Vdr~F~i~g~Gt~~~~~~G~VvtGtv~~G~ik~GD~vei~Pg~~~~~~~~~~ 265 (410)
T PRK04000 189 DALIEAIEEEI---PTPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEKGGKTK 265 (410)
T ss_pred CHHHHHHHHHC---CCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCCCCCCC
T ss_conf 08999898627---787778889944899888850579865535644178889976278429989994474334566531
Q ss_pred E---EEEEHHHHHCCHHHHHHHCCCEEEEEEE---CC--EEEEECCEE
Q ss_conf 8---2262576644600668727976699972---84--110058989
Q gi|254780787|r 833 Y---EGKLKTLKRFKDEVSEVHAGQDCGMAFE---KY--DNIQAGDMI 872 (884)
Q Consensus 833 ~---~g~i~sl~~~k~~v~ev~~g~ecgi~~~---~~--~~~~~gD~i 872 (884)
| .-+|.||+.+...+.++..|+-|||.+. +. .|+..|+++
T Consensus 266 ~~pi~t~V~si~~~~~~~~~a~aG~~vai~~~ld~~i~r~D~~rG~Vl 313 (410)
T PRK04000 266 WEPITTKITSLRAGGEKVEEARPGGLVGVGTKLDPALTKADALAGSVA 313 (410)
T ss_pred CCCCEEEEEEEEECCEEHHEECCCCEEEECCCCCCCCCHHHHHCCCEE
T ss_conf 122126998997478391101367658522334555335574156554
No 291
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.60 E-value=0.00011 Score=50.04 Aligned_cols=55 Identities=27% Similarity=0.431 Sum_probs=41.8
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHH-HCCCCCCEECCCEEEEECCCCEEEEEECCC
Q ss_conf 5303898623685044677788642221-001231000121499951784388885166
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKADVA-KGEIGGITQHIGAYQVAYQGKNITFLDTPG 439 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~~~~-~~e~ggitq~iga~~~~~~~~~~~~iDtPG 439 (884)
++.-|+|+|+-+.||+||+-+|++.+.+ -+..-|+|+++--+.+ ...+.||||||
T Consensus 100 ~~~~v~ivG~PNVGKSTLIN~L~~~~~~~v~~~pGtTr~~~~i~~---~~~~~liDTpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKI---TSKIYLLDTPG 155 (156)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEECCEEEEEE---CCCEEEEECCC
T ss_conf 662899981478459899999748813777599980705599997---99889998909
No 292
>TIGR00436 era GTP-binding protein Era; InterPro: IPR005662 Era is an essential G-protein in Escherichia coli identified originally as a homologue protein to Ras (E. coli Ras-like protein). It binds to GTP/GDP and contains a low intrinsic GTPase activity. Its function remains elusive, although it may be associated with cell division, energy metabolism, and cell-cycle check point. The protein has recently been shown to specifically bind to 16S rRNA and the 30S ribosomal subunit . Involvement of Era in protein synthesis is suggested by the fact that Era depletion results in the translation defect both in vitro and in vivo. A Type 2 KH domain is found near the C-terminus. ; GO: 0003723 RNA binding, 0005525 GTP binding, 0005622 intracellular.
Probab=97.58 E-value=0.00029 Score=47.14 Aligned_cols=154 Identities=21% Similarity=0.197 Sum_probs=105.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCC-CCEECCCEEEEECCCCE-EEEEECCCHHHH---------HHHHHHHHHC
Q ss_conf 389862368504467778864222100123-10001214999517843-888851661578---------9998666420
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADVAKGEIG-GITQHIGAYQVAYQGKN-ITFLDTPGHAAF---------YEMRARGARV 453 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~~~~e~g-gitq~iga~~~~~~~~~-~~~iDtPGh~~f---------~~~r~rg~~~ 453 (884)
.+.++|.-+.||+||+..+.+.++.--..- ..|.+--...+...... +.|+||||...- .........-
T Consensus 2 ~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~pg~~~~~~~~~~~~~~~~~~~~~~~ 81 (278)
T TIGR00436 2 FVAILGRPNVGKSTLLNKLLGQKISITSPKPQTTRNRISGILTTGASQNIIFIDTPGFHEPEKHKLGELLNKEARSALGG 81 (278)
T ss_pred CEEECCCCCCCHHHHHHHHHCCCHHCCCCCCHHHHHHHHEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 11211577653366777663241010023101234332001223665515786258765124567788888888753123
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 68059999836674023577789899709941561233124433200022100001320001234740363110024774
Q gi|254780787|r 454 TDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNL 533 (884)
Q Consensus 454 ~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (884)
.|+.+++|+.+++....-.-.+..++..+.|+++.+|++|.... .+.....+.... ....+. ....+++++..+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~ 158 (278)
T TIGR00436 82 VDLLLFVVDSDEWNGDGDEFLLEKLQNLKRPVLLTLNKLDNKNF-PDKLLPLLDKYA-GLEDFK-PWPIVPISALKGDNT 158 (278)
T ss_pred CEEEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCH-HHHHHHHHHHHH-HHHCCC-CCCEEEHHHHHHCHH
T ss_conf 22688986334455640468898765202101001223331010-356777776665-542046-752011011210005
Q ss_pred CCCCCCHH
Q ss_conf 11221000
Q gi|254780787|r 534 DKLLDAIL 541 (884)
Q Consensus 534 ~~~~~~~~ 541 (884)
..+...+.
T Consensus 159 ~~~~~~~~ 166 (278)
T TIGR00436 159 EELKAFLE 166 (278)
T ss_pred HHHHHHHH
T ss_conf 77888877
No 293
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.57 E-value=0.00024 Score=47.63 Aligned_cols=82 Identities=17% Similarity=0.192 Sum_probs=68.3
Q ss_pred EEEEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHCCHHHHHHHCCCEEEEEEECCEEEEEC
Q ss_conf 87899978873389870789998521784698079966998998226257664460066872797669997284110058
Q gi|254780787|r 790 LGNAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRFKDEVSEVHAGQDCGMAFEKYDNIQAG 869 (884)
Q Consensus 790 ~g~a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~~~~~~~g 869 (884)
.-+.-|..||+.+.......-+|..|.|+.|..|.++-.|.. .+|++|..+..++.++..|+-++|.|++-.|+.-|
T Consensus 245 pfRlPVq~V~r~~~~~rg~~G~I~sG~i~~GD~V~vlPsg~~---a~Vk~I~~~~~~~~~A~aG~sV~l~L~deiDIsRG 321 (475)
T PRK05124 245 PFRFPVQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSGKE---SNVARIVTFDGDLEEAFAGEAITLVLEDEIDISRG 321 (475)
T ss_pred CCCCCCEEEECCCCCCEEEEEEEEECEECCCCEEEECCCCCE---EEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCC
T ss_conf 655665798626877316889971332717998999389975---89899996586525438998799996034468998
Q ss_pred CEEEE
Q ss_conf 98999
Q gi|254780787|r 870 DMIEC 874 (884)
Q Consensus 870 D~i~~ 874 (884)
|+|-.
T Consensus 322 dVl~~ 326 (475)
T PRK05124 322 DLLVA 326 (475)
T ss_pred CEEEC
T ss_conf 38973
No 294
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=97.52 E-value=0.00013 Score=49.53 Aligned_cols=111 Identities=17% Similarity=0.109 Sum_probs=66.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHHC-------CCCEEEEEECCCCCCHH-----HHHHHHHHHHCCCCEEEECCCCCCCCCC
Q ss_conf 38888516615789998666420-------68059999836674023-----5777898997099415612331244332
Q gi|254780787|r 431 NITFLDTPGHAAFYEMRARGARV-------TDIAVLVLAADEEIMPQ-----AIESINHAKAADVSIIVAINKIDKLGAD 498 (884)
Q Consensus 431 ~~~~iDtPGh~~f~~~r~rg~~~-------~d~~ilvv~~~~g~~~q-----t~e~~~~~~~~~~p~iva~nk~d~~~~~ 498 (884)
...++||||.--|-..+.-|..+ .=.++.+||+..=-.|. ..-++...-..++|+|.++||+|.....
T Consensus 91 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~v~l~D~~~~~d~~~fis~~L~a~s~m~~l~lP~vnvlsK~Dl~~~~ 170 (234)
T pfam03029 91 DYYLFDTPGQIELFTHWDSLARGVEALEASRLGAVYLVDTRRLTDPIDFFSGLLYALSIMLRLGLPFVVALNKFDLLSLE 170 (234)
T ss_pred CEEEEECCCCEEEEECCHHHHHHHHHHHCCCEEEEEEECHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHCCCCH
T ss_conf 76998369835765400269999999712873899984257746888899999999999997489944310004135424
Q ss_pred -----CCHH----------HHHHHCCC-CCCCCCCCCCEEEEEEECCCCCCCCCCCCHH
Q ss_conf -----0002----------21000013-2000123474036311002477411221000
Q gi|254780787|r 499 -----PQKV----------RMSLLKHD-VFVESMGGDILDVEISAKNNLNLDKLLDAIL 541 (884)
Q Consensus 499 -----~~~~----------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (884)
-..+ ...+.... ...++++....+++++...++++..++..+.
T Consensus 171 ~~l~~~~d~~~l~~~l~~~~~~L~~~l~~lledf~lv~~f~~ls~~~~~s~~~ll~~ID 229 (234)
T pfam03029 171 FALKWFTDPDDLQLLLELDYRYLNEAIRLALDLFYLVPRFLCDARETGESMEDLLTLID 229 (234)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHH
T ss_conf 45777528788988878879999999999998725736614656886027999999988
No 295
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=97.50 E-value=0.00024 Score=47.69 Aligned_cols=79 Identities=19% Similarity=0.300 Sum_probs=68.4
Q ss_pred EEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHCCHHHHHHHCCCEEEEEEECCEEEEECCEE
Q ss_conf 99978873389870789998521784698079966998998226257664460066872797669997284110058989
Q gi|254780787|r 793 AEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRFKDEVSEVHAGQDCGMAFEKYDNIQAGDMI 872 (884)
Q Consensus 793 a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~~~~~~~gD~i 872 (884)
.-|+.||+.+......--+|..|.++.|..+.++-.|+. .+|++|..+.++++++..|+-|+|.|++--|+.=||+|
T Consensus 3 ~PVQ~V~r~~~~~R~~~G~v~sG~v~~GD~v~i~Psg~~---a~Vk~I~~~~~~~~~A~aG~~v~l~L~~eidisRGdvi 79 (81)
T cd03695 3 FPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKT---SRVKSIETFDGELDEAGAGESVTLTLEDEIDVSRGDVI 79 (81)
T ss_pred CCEEEEEECCCCCCEEEEEEEECCEECCCEEEECCCCCC---EEEEEEEECCCCCCEECCCCEEEEEECCCCCCCCCCEE
T ss_conf 251899826998468999993355838999996899981---89989995899824887998289997873115798798
Q ss_pred EE
Q ss_conf 99
Q gi|254780787|r 873 EC 874 (884)
Q Consensus 873 ~~ 874 (884)
-+
T Consensus 80 ~s 81 (81)
T cd03695 80 VA 81 (81)
T ss_pred EC
T ss_conf 59
No 296
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=97.49 E-value=0.001 Score=43.41 Aligned_cols=157 Identities=19% Similarity=0.194 Sum_probs=96.8
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCC-------------CC-C----------EECCCEEEEEC---------
Q ss_conf 553038986236850446777886422210012-------------31-0----------00121499951---------
Q gi|254780787|r 381 IRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEI-------------GG-I----------TQHIGAYQVAY--------- 427 (884)
Q Consensus 381 ~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~-------------gg-i----------tq~iga~~~~~--------- 427 (884)
-++.+|.|-|-=-.||+||+|+|-..-...|.. || | ..+-++|--+.
T Consensus 47 g~a~~iGiTG~pG~GKStli~~l~~~~~~~g~~v~vlavDPsS~~sgGaiLGDr~Rm~~~~~~~~~fiRs~~srg~lgg~ 126 (325)
T PRK09435 47 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGV 126 (325)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
T ss_conf 98259974279998688999999999996798589999789999888610103888876147998488406778886773
Q ss_pred -------------CCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf -------------7843888851661578999866642068059999836674023577789899709941561233124
Q gi|254780787|r 428 -------------QGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDK 494 (884)
Q Consensus 428 -------------~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~ 494 (884)
-+..+.||-|-|----- ..-+.++|..+||....-|=+-|.+-+= -..+.-|+++||.|.
T Consensus 127 ~~~~~~~~~~~~a~g~d~i~iETvGvGQ~e---~~v~~~~d~~~~~~~p~~GD~~Q~~K~G----ImEiaDi~vVNKaDg 199 (325)
T PRK09435 127 ARKTRETMLLCEAAGFDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIKKG----IMELADLIVINKADG 199 (325)
T ss_pred CHHHHHHHHHHHHCCCCEEEEEECCCCHHH---HHHHHHCCEEEEEECCCCCCHHHHHHHH----HHHHCCEEEEECCCC
T ss_conf 354999999999779998999706777148---8998742668888358876088998865----775042689977675
Q ss_pred CCCCC-CHHHHHHHCCCC-C-CCCCCCCCEEEEEEECCCCCCCCCCCCHHCCC
Q ss_conf 43320-002210000132-0-00123474036311002477411221000023
Q gi|254780787|r 495 LGADP-QKVRMSLLKHDV-F-VESMGGDILDVEISAKNNLNLDKLLDAILLQA 544 (884)
Q Consensus 495 ~~~~~-~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (884)
..... .+...++...+. + ....+...+.+.+||.+++|++++++.+.-+.
T Consensus 200 d~~~~A~~t~~e~~~aL~l~~~~~~~W~ppVl~~SA~~g~GI~eL~~~I~~h~ 252 (325)
T PRK09435 200 DNHTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDELWQAIEDHR 252 (325)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 56589999999999998607887899999989998158998799999999999
No 297
>KOG0075 consensus
Probab=97.48 E-value=0.00057 Score=45.13 Aligned_cols=151 Identities=23% Similarity=0.267 Sum_probs=100.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCE--EEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 8986236850446777886422210012310001214--99951784388885166157899986664206805999983
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGA--YQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga--~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
++++|-=..|||||.-.+-... ..|--+ -+.|+ +.+....-.+.+-|.||.-.|-.|=.|=-.-+|..+++|||
T Consensus 23 l~lvGLq~sGKtt~Vnvia~g~--~~edmi--ptvGfnmrkvtkgnvtik~wD~gGq~rfrsmWerycR~v~aivY~VDa 98 (186)
T KOG0075 23 LSLVGLQNSGKTTLVNVIARGQ--YLEDMI--PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDA 98 (186)
T ss_pred EEEEEECCCCCCEEEEEEECCC--CHHHHC--CCCCCEEEEECCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEEC
T ss_conf 8888532478525888875067--456643--024632688315836999983699760888999986038689999616
Q ss_pred CCC--CCHHHHHHHHHHH---HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 667--4023577789899---70994156123312443320002210000132000123474036311002477411221
Q gi|254780787|r 464 DEE--IMPQAIESINHAK---AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLD 538 (884)
Q Consensus 464 ~~g--~~~qt~e~~~~~~---~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (884)
-|- +..---|--.|+- -.++|..|.-||+|++++-......+-+..... ...++-..-+|++...+++..+.
T Consensus 99 ad~~k~~~sR~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~si---tdREvcC~siScke~~Nid~~~~ 175 (186)
T KOG0075 99 ADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSI---TDREVCCFSISCKEKVNIDITLD 175 (186)
T ss_pred CCCCCCHHHHHHHHHHHCCHHHCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCC---CCCEEEEEEEEECCCCCHHHHHH
T ss_conf 786534312999998850321148717996255667553227899998384524---46457899998768756899999
Q ss_pred CHHCC
Q ss_conf 00002
Q gi|254780787|r 539 AILLQ 543 (884)
Q Consensus 539 ~~~~~ 543 (884)
-+..+
T Consensus 176 Wli~h 180 (186)
T KOG0075 176 WLIEH 180 (186)
T ss_pred HHHHH
T ss_conf 99997
No 298
>KOG0095 consensus
Probab=97.47 E-value=0.00063 Score=44.81 Aligned_cols=148 Identities=22% Similarity=0.278 Sum_probs=103.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCC----EEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 898623685044677788642221001231000121----4999517843888851661578999866642068059999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIG----AYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVL 461 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~ig----a~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv 461 (884)
|...|.-..|||-|..+....-...|. |-|...+ ..++..+..++.+-||-|.+.|-++...--..+...|||-
T Consensus 10 ivlvgnagvgktclvrrftqglfppgq--gatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvy 87 (213)
T KOG0095 10 IVLVGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (213)
T ss_pred EEEECCCCCCCCHHHHHHHCCCCCCCC--CCEEEEEEEEEEEEECCEEEEEEEEECCCHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 999735776733004455226789998--766423379999998780899998413256888888998864116489998
Q ss_pred ECCCC----CCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 83667----40235777898997099415612331244332000221000013200012347403631100247741122
Q gi|254780787|r 462 AADEE----IMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLL 537 (884)
Q Consensus 462 ~~~~g----~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (884)
|+.-- ..|.-.--|...-..++--|.+-||+|+.. ...+.+++.+....+ .+..++..||+..++++.|+
T Consensus 88 discqpsfdclpewlreie~yan~kvlkilvgnk~d~~d--rrevp~qigeefs~~----qdmyfletsakea~nve~lf 161 (213)
T KOG0095 88 DISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLAD--RREVPQQIGEEFSEA----QDMYFLETSAKEADNVEKLF 161 (213)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHH--HHHHHHHHHHHHHHH----HHHHHHHHCCCCHHHHHHHH
T ss_conf 534574310139999999998506427876146656123--333058887888775----55665320200010399999
Q ss_pred CCHH
Q ss_conf 1000
Q gi|254780787|r 538 DAIL 541 (884)
Q Consensus 538 ~~~~ 541 (884)
..+.
T Consensus 162 ~~~a 165 (213)
T KOG0095 162 LDLA 165 (213)
T ss_pred HHHH
T ss_conf 9999
No 299
>KOG1144 consensus
Probab=97.39 E-value=0.00021 Score=48.08 Aligned_cols=279 Identities=11% Similarity=-0.001 Sum_probs=150.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEECCCCCCCCCCCCH----------HHHHHHCCCC----------
Q ss_conf 06805999983667402357778989970994-15612331244332000----------2210000132----------
Q gi|254780787|r 453 VTDIAVLVLAADEEIMPQAIESINHAKAADVS-IIVAINKIDKLGADPQK----------VRMSLLKHDV---------- 511 (884)
Q Consensus 453 ~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p-~iva~nk~d~~~~~~~~----------~~~~~~~~~~---------- 511 (884)
+-=..+||||--- .|++.-++.++.. +=+||-=+|...+-... .++.|.-.+-
T Consensus 537 ~kvPg~lvIdtpg------hEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~ 610 (1064)
T KOG1144 537 LKVPGLLVIDTPG------HESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKS 610 (1064)
T ss_pred CCCCEEEEECCCC------CHHHHHHHHCCCCCCCEEEEEEEHHCCCCCCHHHHHHHHHHCCCCEEEEEHHHHHHCCCCC
T ss_conf 3787048965887------2555556650433455377785311167742067899887548975986101344404424
Q ss_pred -----------CCCCCCCCCEEEEEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHC
Q ss_conf -----------000123474036311002477411221000023333420003486664167778863776200000000
Q gi|254780787|r 512 -----------FVESMGGDILDVEISAKNNLNLDKLLDAILLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQK 580 (884)
Q Consensus 512 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (884)
.|.....+.|..++..+..++.+++||+.+|+.+..+..+++.+|++++.++++.|.....+.+++..+
T Consensus 611 ~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m 690 (1064)
T KOG1144 611 CPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM 690 (1064)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 89831999998744789999999999999999971104434231467465588621221367880789999999999999
Q ss_pred CHHHCCCCCCCCCCCCCCEECC-------CCC-CCCCCCCCCCCCCCCCCCCCCCC-CCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 0000000002566555420001-------466-53221000012221111234755-55404312420366899999999
Q gi|254780787|r 581 GTLSKGNILVVGDQWGKIRALF-------NDR-GQGISKAVPSMPIEVLGLQGMPM-AGDKFGVVDSESRAREIAQYRQR 651 (884)
Q Consensus 581 g~~~~~~~~~~~~~~~~v~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 651 (884)
+.......-|.+ +..-|+.+- ... +..+.+ +.-+.+.|+.+... .-..++.+.+.++.|....|.++
T Consensus 691 ~~kl~y~~ev~c-TVlEVKvieG~GtTIDViLvNG~L~e---GD~IvvcG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hh 766 (1064)
T KOG1144 691 VEKLAYVDEVQC-TVLEVKVIEGHGTTIDVILVNGELHE---GDQIVVCGLQGPIVTTIRALLTPQPLKELRVKGTYVHH 766 (1064)
T ss_pred HHHHHHHHHEEE-EEEEEEEECCCCCEEEEEEECCEECC---CCEEEECCCCCCHHHHHHHHCCCCCHHHHCCCCCEEEH
T ss_conf 987742401004-78998752377716899987565526---98799827998616888976388644764105533236
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHH
Q ss_conf 99999987766445657888852000123023344433310231234555421157653565788512685757788764
Q gi|254780787|r 652 VTRNKSMARRLGSHSALEKLVKNANISSKMKEFPVIIKGDVQGSVEAIVDSLGALKNSEVCLSIVHSSVGAINETDVSLA 731 (884)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~d~~gs~eal~~~l~~~~~~ev~i~v~~~~VG~v~~~DV~~A 731 (884)
......+...+........+................++.+..-.++.+...+.+. ...+-|.....|.+- .=+.+-
T Consensus 767 kEvkaA~GiKI~A~~LEkaiaG~~l~VvgpeDd~e~lk~~~m~dl~~~l~~Id~s---geGv~vqastlgsle-allefl 842 (1064)
T KOG1144 767 KEVKAAQGIKIAAKDLEKAIAGTRLLVVGPEDDIEELKEEAMEDLESVLSRIDKS---GEGVYVQASTLGSLE-ALLEFL 842 (1064)
T ss_pred HHHHHHCCCHHHHCCHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCEEEEECCCCHHH-HHHHHH
T ss_conf 6756530502453256777537756875775448999999999999999876236---873588724420099-999998
Q ss_pred HHCCCEEEEECCCC
Q ss_conf 32598799963899
Q gi|254780787|r 732 KASGAVIFGFNVRA 745 (884)
Q Consensus 732 ~~~~a~Il~FnVkv 745 (884)
..+.-.+.|.|+-+
T Consensus 843 k~~kIPv~gi~IGP 856 (1064)
T KOG1144 843 KTVKIPVSGIGIGP 856 (1064)
T ss_pred HHCCCCCCCCCCCC
T ss_conf 60576402443464
No 300
>KOG0093 consensus
Probab=97.38 E-value=0.00041 Score=46.12 Aligned_cols=151 Identities=19% Similarity=0.220 Sum_probs=94.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHH--CCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 38986236850446777886422210--0123100012149995178438888516615789998666420680599998
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADVAK--GEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLA 462 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~~~--~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~ 462 (884)
-++|||.--.|||++|-.--...-+. -..=||-=.....+-.-...++.+.||-|.|.+..+-.---.-++..||..|
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyD 102 (193)
T KOG0093 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 102 (193)
T ss_pred EEEEECCCCCCCHHHHHHHHCCCCCCCEEEEEEEEEEEEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 68997268766213557760655440004663113788676514647788987166510356777887614645999985
Q ss_pred CCCCCCHHHHH----HHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 36674023577----78989970994156123312443320002210000132000123474036311002477411221
Q gi|254780787|r 463 ADEEIMPQAIE----SINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLD 538 (884)
Q Consensus 463 ~~~g~~~qt~e----~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (884)
+..--.--..+ -|++.---+.|+|+|.||+|+.. +++.... .-..+..++|.+ +...|++...|+.++++
T Consensus 103 itNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~---eRvis~e-~g~~l~~~LGfe--fFEtSaK~NinVk~~Fe 176 (193)
T KOG0093 103 ITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDS---ERVISHE-RGRQLADQLGFE--FFETSAKENINVKQVFE 176 (193)
T ss_pred CCCHHHHHHHHHHHHHHEEEECCCCEEEEEECCCCCCC---CEEEEHH-HHHHHHHHHCHH--HHHHCCCCCCCHHHHHH
T ss_conf 47878889899898875034316861899804557743---2001278-888999984847--75513302666999999
Q ss_pred CHH
Q ss_conf 000
Q gi|254780787|r 539 AIL 541 (884)
Q Consensus 539 ~~~ 541 (884)
.++
T Consensus 177 ~lv 179 (193)
T KOG0093 177 RLV 179 (193)
T ss_pred HHH
T ss_conf 999
No 301
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.33 E-value=0.00029 Score=47.08 Aligned_cols=56 Identities=32% Similarity=0.500 Sum_probs=42.5
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHH-HCCCCCCEECCCEEEEECCCCEEEEEECCC
Q ss_conf 55303898623685044677788642221-001231000121499951784388885166
Q gi|254780787|r 381 IRPPVVTIMGHVDHGKTSLLDAIRKADVA-KGEIGGITQHIGAYQVAYQGKNITFLDTPG 439 (884)
Q Consensus 381 ~R~pvv~v~ghvd~GKt~lld~~r~~~~~-~~e~ggitq~iga~~~~~~~~~~~~iDtPG 439 (884)
.++--|.|+|.-+.||+||+-+|++.+.+ -+..-|.|.++..+.. +..+.+|||||
T Consensus 113 ~~~~~v~ivG~PNVGKSSlIN~L~~~~~~~v~~~pGtTr~~~~i~~---~~~~~liDTPG 169 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKI---SPGIYLLDTPG 169 (171)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCEEEEEE---CCCEEEEECCC
T ss_conf 7771799973798761799999748863887698985326679996---89999997998
No 302
>KOG0072 consensus
Probab=97.30 E-value=0.00054 Score=45.25 Aligned_cols=150 Identities=21% Similarity=0.176 Sum_probs=99.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 38986236850446777886422210012310001214999517843888851661578999866642068059999836
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAAD 464 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~ 464 (884)
-+-|||-.-+||||+|=.+.--+|...-. |..-..-+++..+.++.+-|--|.-+.-..-..=-+-+|-+|.|||.-
T Consensus 20 rililgldGaGkttIlyrlqvgevvttkP---tigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDss 96 (182)
T KOG0072 20 RILILGLDGAGKTTILYRLQVGEVVTTKP---TIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSS 96 (182)
T ss_pred EEEEEECCCCCEEEEEEECCCCCCCCCCC---CCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHCCCCEEEEEEECC
T ss_conf 78985036777069998712586434589---988680215536655124671586433277888760666289997165
Q ss_pred CCCC--HHHHHHHHHHH---HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 6740--23577789899---709941561233124433200022100001320001234740363110024774112210
Q gi|254780787|r 465 EEIM--PQAIESINHAK---AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDA 539 (884)
Q Consensus 465 ~g~~--~qt~e~~~~~~---~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (884)
+--. .-..|-..++. -.+..++|++||.|..+.- ..++.+..+-.+.--..-...+..||++|+|++..++-
T Consensus 97 d~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~---t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DW 173 (182)
T KOG0072 97 DRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL---TRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDW 173 (182)
T ss_pred CHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCCCCHHHH---HHHHHHHHHCHHHHHHHEEEEEEECCCCCCCCCHHHHH
T ss_conf 434431468999998554865484699986045521355---69999998482887502268876011446677678999
Q ss_pred H
Q ss_conf 0
Q gi|254780787|r 540 I 540 (884)
Q Consensus 540 ~ 540 (884)
+
T Consensus 174 L 174 (182)
T KOG0072 174 L 174 (182)
T ss_pred H
T ss_conf 9
No 303
>KOG0079 consensus
Probab=97.29 E-value=0.0013 Score=42.57 Aligned_cols=146 Identities=21% Similarity=0.191 Sum_probs=94.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCE------EEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 8986236850446777886422210012310001214------9995178438888516615789998666420680599
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGA------YQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga------~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
-||+|.--.|||+||-..+...... --+-.||. ..++.+..++.+.||-|.|.|..|-..=-.-+..+|+
T Consensus 11 llIigDsgVGKssLl~rF~ddtFs~----sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079 11 LLIIGDSGVGKSSLLLRFADDTFSG----SYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHEECCCCCCHHHHHHHHHHCCCCC----CEEEEEEEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 8832687645789999985255565----148875335799986048868999986140579999998877038866999
Q ss_pred EEECCCCCCHHHHHHHHHHHHC---CCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 9983667402357778989970---9941561233124433200022100001320001234740363110024774112
Q gi|254780787|r 460 VLAADEEIMPQAIESINHAKAA---DVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKL 536 (884)
Q Consensus 460 vv~~~~g~~~qt~e~~~~~~~~---~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (884)
|-|...|-.---.--|..--.. -+|-|.+-||.|.+.-. -+..+.+ ..+.. +.++.....|++...|.+..
T Consensus 87 VYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~Rr--vV~t~dA--r~~A~--~mgie~FETSaKe~~NvE~m 160 (198)
T KOG0079 87 VYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERR--VVDTEDA--RAFAL--QMGIELFETSAKENENVEAM 160 (198)
T ss_pred EEECCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCE--EEEHHHH--HHHHH--HCCCHHEEHHHHHCCCCHHH
T ss_conf 997766365675999999998549643522104678875433--4303889--99998--66920100002330241678
Q ss_pred CCCHH
Q ss_conf 21000
Q gi|254780787|r 537 LDAIL 541 (884)
Q Consensus 537 ~~~~~ 541 (884)
+..|.
T Consensus 161 F~cit 165 (198)
T KOG0079 161 FHCIT 165 (198)
T ss_pred HHHHH
T ss_conf 99999
No 304
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.25 E-value=0.0004 Score=46.19 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=22.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC-CCCEEEECCCCCCC
Q ss_conf 805999983667402357778989970-99415612331244
Q gi|254780787|r 455 DIAVLVLAADEEIMPQAIESINHAKAA-DVSIIVAINKIDKL 495 (884)
Q Consensus 455 d~~ilvv~~~~g~~~qt~e~~~~~~~~-~~p~iva~nk~d~~ 495 (884)
|++|+||||-.|+.+.-.+...+++.. +-|+|+++||+|..
T Consensus 1 D~il~VvDaR~pl~~~~~~~~~~l~~~~~K~~ilvlNK~Dl~ 42 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLV 42 (155)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 989999968799998899999999865899489997673458
No 305
>KOG0071 consensus
Probab=97.23 E-value=0.0016 Score=42.06 Aligned_cols=148 Identities=18% Similarity=0.148 Sum_probs=102.1
Q ss_pred EEEEECCCCCHHHHHHHHHHH-HHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 898623685044677788642-2210012310001214999517843888851661578999866642068059999836
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKA-DVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAAD 464 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~-~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~ 464 (884)
+-.+|---.||||||-+|.-. .+..-- |---..-.|++.+.++++-|.-|..-.-.+-.+=-.-+...|.|+|+-
T Consensus 20 ilmlGLd~aGKTtiLyKLkl~~~~~~ip----TvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa 95 (180)
T KOG0071 20 ILMLGLDAAGKTTILYKLKLGQSVTTIP----TVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSA 95 (180)
T ss_pred EEEEECCCCCCEEHHHHHHCCCCCCCCC----CCCEEEEEEEEEEEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 7888126688400346876289764035----542047777730068852122671220488986356772599998243
Q ss_pred CC--CCH---HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 67--402---3577789899709941561233124433200022100001320001234740363110024774112210
Q gi|254780787|r 465 EE--IMP---QAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDA 539 (884)
Q Consensus 465 ~g--~~~---qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (884)
+- ++. .-.-.|++-....+||.|..||-|++.+-.......+++... --+..-...|.++.+|+++.++|.-
T Consensus 96 ~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~---~r~~~W~vqp~~a~~gdgL~eglsw 172 (180)
T KOG0071 96 DRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELER---IRDRNWYVQPSCALSGDGLKEGLSW 172 (180)
T ss_pred CCCHHHHHHHHHHHHHCCHHHHCCEEEEEECCCCCCCCCCHHHHHHHHCCCC---CCCCCCEEECCCCCCHHHHHHHHHH
T ss_conf 2104999999999985787661205898854665522169899888754231---2699606603534440278889999
Q ss_pred H
Q ss_conf 0
Q gi|254780787|r 540 I 540 (884)
Q Consensus 540 ~ 540 (884)
+
T Consensus 173 l 173 (180)
T KOG0071 173 L 173 (180)
T ss_pred H
T ss_conf 9
No 306
>KOG0086 consensus
Probab=97.23 E-value=0.0035 Score=39.70 Aligned_cols=147 Identities=19% Similarity=0.231 Sum_probs=86.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE--EEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 89862368504467778864222100123100012149--9951784388885166157899986664206805999983
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY--QVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~--~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
+.|+|.-.+||+-||...-...--+.-...|-...|.- +|-....++.+-||-|.+.|-..-..=-.-+-.|+||-|+
T Consensus 12 fl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~ 91 (214)
T KOG0086 12 FLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDI 91 (214)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEECCCEEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 68864688863279999998641365464420220110254057189999863425788999999875365642799852
Q ss_pred CCCCCHHHHHH-HHHHHHCCCC---EEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 66740235777-8989970994---156123312443320002210000132000123474036311002477411221
Q gi|254780787|r 464 DEEIMPQAIES-INHAKAADVS---IIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLD 538 (884)
Q Consensus 464 ~~g~~~qt~e~-~~~~~~~~~p---~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (884)
..--.--..-+ +.-++..--| +|.+-||-|+... +... +++.-.+..+ .+..+...|+.+|+|+++.+-
T Consensus 92 TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~---R~Vt-flEAs~FaqE--nel~flETSa~TGeNVEEaFl 164 (214)
T KOG0086 92 TSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPE---REVT-FLEASRFAQE--NELMFLETSALTGENVEEAFL 164 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHCCHH---HHHH-HHHHHHHHCC--CCEEEEEECCCCCCCHHHHHH
T ss_conf 45556999999888777647996799993771214412---1003-8998866330--311112202323556899999
No 307
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.21 E-value=0.00062 Score=44.86 Aligned_cols=55 Identities=27% Similarity=0.465 Sum_probs=40.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHH-HHCCCCCCEECCCEEEEECCCCEEEEEECCC
Q ss_conf 530389862368504467778864222-1001231000121499951784388885166
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKADV-AKGEIGGITQHIGAYQVAYQGKNITFLDTPG 439 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~~~-~~~e~ggitq~iga~~~~~~~~~~~~iDtPG 439 (884)
.+.-|+|+|+-+.||+||+-+|.+... .-+..=|.|.++--+.+. ..+.||||||
T Consensus 99 ~~~~i~ivG~PNVGKSsliN~L~~~~~~~v~~~pGtTrd~~~i~~~---~~~~liDTpG 154 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEECEEEEEEC---CCEEEEECCC
T ss_conf 6608999877774477899998478506266999838355999968---9989997929
No 308
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.0021 Score=41.20 Aligned_cols=103 Identities=22% Similarity=0.420 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHCCH
Q ss_conf 67899999999963069404788887899978873389870789998521784698079966998998226257664460
Q gi|254780787|r 766 IYDLLDSIKDSMSELLSPEIRETFLGNAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRFKD 845 (884)
Q Consensus 766 IY~L~d~~~~~~~~~l~~~~~~~~~g~a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~ 845 (884)
.+.|++.+- .+-.|...-.-+=+.-|+.++.++..|+|.=-+|-.|.|+.|..+.+.-.+.+ |.|.|+...++
T Consensus 211 GpTLleaLd----~~~~p~~~~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~---~evksie~~~~ 283 (428)
T COG5256 211 GPTLLEALD----QLEPPERPLDKPLRLPIQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAGVV---GEVKSIEMHHE 283 (428)
T ss_pred CCHHHHHHH----CCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEEECCCCE---EEEEEEEECCC
T ss_conf 871898974----55789877788817680017871688547887886134516987999648612---78764561266
Q ss_pred HHHHHHCCCEEEEEEECC--EEEEECCEEEEE
Q ss_conf 066872797669997284--110058989998
Q gi|254780787|r 846 EVSEVHAGQDCGMAFEKY--DNIQAGDMIECF 875 (884)
Q Consensus 846 ~v~ev~~g~ecgi~~~~~--~~~~~gD~i~~~ 875 (884)
....+-.|.-||..+.+- +|++-||+|-.+
T Consensus 284 ~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~ 315 (428)
T COG5256 284 EISQAEPGDNVGFNVRGVEKNDIRRGDVIGHS 315 (428)
T ss_pred CCCCCCCCCEEEEEECCCCHHCCCCCCEECCC
T ss_conf 54447898768898357754316776574047
No 309
>KOG0087 consensus
Probab=97.18 E-value=0.0018 Score=41.73 Aligned_cols=150 Identities=20% Similarity=0.227 Sum_probs=94.9
Q ss_pred EEEEECCCCCHHHHHHHH-HHHHHHHCCC-CCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 898623685044677788-6422210012-31000121499951784388885166157899986664206805999983
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAI-RKADVAKGEI-GGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~-r~~~~~~~e~-ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
|..+|.-.-||+-||-.. |+--..+.-+ -|+.-+-.-..+.....+..|-||-|.|.|-++-+-=-..+-.|+||-|+
T Consensus 17 iVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDI 96 (222)
T KOG0087 17 IVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI 96 (222)
T ss_pred EEEECCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEEEECCCCHHHHCCCCCHHHCCCCEEEEEEEC
T ss_conf 99957876553677877433546756666246887750023568178876532611456500111221344036999950
Q ss_pred CCCCCHHHHHHH-HHHHH---CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 667402357778-98997---09941561233124433200022100001320001234740363110024774112210
Q gi|254780787|r 464 DEEIMPQAIESI-NHAKA---ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDA 539 (884)
Q Consensus 464 ~~g~~~qt~e~~-~~~~~---~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (884)
..-..-+-++-| .-|+. .+++++++-||+|+.. ...+..+.... +++. ...++..+||....+++..+..
T Consensus 97 Tr~~Tfenv~rWL~ELRdhad~nIvimLvGNK~DL~~--lraV~te~~k~--~Ae~--~~l~f~EtSAl~~tNVe~aF~~ 170 (222)
T KOG0087 97 TRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH--LRAVPTEDGKA--FAEK--EGLFFLETSALDATNVEKAFER 170 (222)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHH--CCCCCHHHHHH--HHHH--CCCEEEEECCCCCCCHHHHHHH
T ss_conf 4677888899999999855887717999612204543--34644566566--8975--2854787003444328899999
Q ss_pred HH
Q ss_conf 00
Q gi|254780787|r 540 IL 541 (884)
Q Consensus 540 ~~ 541 (884)
++
T Consensus 171 ~l 172 (222)
T KOG0087 171 VL 172 (222)
T ss_pred HH
T ss_conf 99
No 310
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.12 E-value=0.00071 Score=44.48 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=27.6
Q ss_pred HHHCCCCEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEECCCCCCC
Q ss_conf 6420680599998366740235777898997--099415612331244
Q gi|254780787|r 450 GARVTDIAVLVLAADEEIMPQAIESINHAKA--ADVSIIVAINKIDKL 495 (884)
Q Consensus 450 g~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~--~~~p~iva~nk~d~~ 495 (884)
-..-||+++.|+||-.++-+.-.+-..++++ .+-|+|+++||+|..
T Consensus 5 ~i~~aD~vl~V~DaR~p~ss~n~~l~~~lr~~~~~K~~i~VlNK~Dl~ 52 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLV 52 (157)
T ss_pred HHHHCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 787599999998898888878989999987537999789999894479
No 311
>COG3596 Predicted GTPase [General function prediction only]
Probab=97.10 E-value=0.0022 Score=41.06 Aligned_cols=112 Identities=21% Similarity=0.372 Sum_probs=77.7
Q ss_pred CCCEE-EEEECCCCCHHHHHHHHHHHHHHHCCCC----CCEECCCEEEEECCCCEEEEEECCCHHH-------HHHHHHH
Q ss_conf 53038-9862368504467778864222100123----1000121499951784388885166157-------8999866
Q gi|254780787|r 382 RPPVV-TIMGHVDHGKTSLLDAIRKADVAKGEIG----GITQHIGAYQVAYQGKNITFLDTPGHAA-------FYEMRAR 449 (884)
Q Consensus 382 R~pvv-~v~ghvd~GKt~lld~~r~~~~~~~e~g----gitq~iga~~~~~~~~~~~~iDtPGh~~-------f~~~r~r 449 (884)
-.||. -+||---.||+||+-+|-.+++..---= -||++.-. ..++..+++.||||-+. .-.+-.-
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~---~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRL---SYDGENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH---HCCCCCEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 6861589743777768899999970267342104668870156774---1266524884378855320221899999998
Q ss_pred HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCC--CCEEEECCCCCCCC
Q ss_conf 642068059999836674023577789899709--94156123312443
Q gi|254780787|r 450 GARVTDIAVLVLAADEEIMPQAIESINHAKAAD--VSIIVAINKIDKLG 496 (884)
Q Consensus 450 g~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~--~p~iva~nk~d~~~ 496 (884)
-+.-.|+++++++++|---.--..-++...-.+ -+.|+++|-.|+..
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~ 162 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAE 162 (296)
T ss_pred HHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEHHHHHC
T ss_conf 8632247999614777001477999999998605760699973665436
No 312
>KOG0097 consensus
Probab=97.08 E-value=0.0079 Score=37.32 Aligned_cols=147 Identities=21% Similarity=0.221 Sum_probs=90.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCE--EEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 8986236850446777886422210012310001214--99951784388885166157899986664206805999983
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGA--YQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga--~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
--|+|....||+-||.-.........-...|--..|. .++....+++.+-||-|.+.|-.....--.-+-.|+.|-|+
T Consensus 14 yiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvydi 93 (215)
T KOG0097 14 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDI 93 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEECCEEEEEEECCEEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 88872465547788888877677505985240312306999607489999731325798999889886066650689974
Q ss_pred CCCCCHHHHHHHHH-HHHCCCC--EEEEC-CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 66740235777898-9970994--15612-3312443320002210000132000123474036311002477411221
Q gi|254780787|r 464 DEEIMPQAIESINH-AKAADVS--IIVAI-NKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLD 538 (884)
Q Consensus 464 ~~g~~~qt~e~~~~-~~~~~~p--~iva~-nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (884)
..--..--.-+|.. ++..-.| .|+.| ||-|+...... ..+ +...+.++. ...++..|+++|+++++.+-
T Consensus 94 trrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv--~ye--eak~faeen--gl~fle~saktg~nvedafl 166 (215)
T KOG0097 94 TRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDV--TYE--EAKEFAEEN--GLMFLEASAKTGQNVEDAFL 166 (215)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCC--CHH--HHHHHHHHC--CEEEEEECCCCCCCHHHHHH
T ss_conf 11334666888886534148997189996561114450378--689--999888755--90899812323676689999
No 313
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.04 E-value=0.0033 Score=39.93 Aligned_cols=61 Identities=30% Similarity=0.503 Sum_probs=42.4
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHC
Q ss_conf 30389862368504467778864222100123100012149995178438888516615789998666420
Q gi|254780787|r 383 PPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARV 453 (884)
Q Consensus 383 ~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~ 453 (884)
-||++|.|.-+.|||||+-+|-.--...|= .+| .+......+. +|+||-.+| .+|.-||..
T Consensus 2 ~Pii~ivG~s~SGKTTLi~kli~~l~~~G~------rV~--~IKH~~H~f~-~D~pGkDS~-r~r~AGA~~ 62 (170)
T PRK10751 2 IPLLAIAAWSGTGKTTLLKKLIPALCARGI------RPG--LIKHTHHDMD-VDKPGKDSY-ELRKAGAAQ 62 (170)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCC------EEE--EEECCCCCCC-CCCCCCCCH-HHHHHCCCE
T ss_conf 877999946999999999999999998798------499--9945777888-999984109-999732664
No 314
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.04 E-value=0.001 Score=43.45 Aligned_cols=47 Identities=23% Similarity=0.251 Sum_probs=28.3
Q ss_pred HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEECCCCCCC
Q ss_conf 66420680599998366740235777898997--099415612331244
Q gi|254780787|r 449 RGARVTDIAVLVLAADEEIMPQAIESINHAKA--ADVSIIVAINKIDKL 495 (884)
Q Consensus 449 rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~--~~~p~iva~nk~d~~ 495 (884)
+-...+|+++.|+||-.|+.+.-.+-..++++ .+-|+|+++||+|+.
T Consensus 7 ~~ie~aDvVleV~DaR~p~~s~~~~l~~~l~~~~~~Kp~ilVlNK~DL~ 55 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLL 55 (141)
T ss_pred HHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 9997699999999898888768999999999843899579998650049
No 315
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.04 E-value=0.0011 Score=43.06 Aligned_cols=54 Identities=24% Similarity=0.580 Sum_probs=40.9
Q ss_pred CCE-EEEEECCCCCHHHHHHHHHHHHHHHCC-CCCCEECCCEEEEECCCCEEEEEECCC
Q ss_conf 303-898623685044677788642221001-231000121499951784388885166
Q gi|254780787|r 383 PPV-VTIMGHVDHGKTSLLDAIRKADVAKGE-IGGITQHIGAYQVAYQGKNITFLDTPG 439 (884)
Q Consensus 383 ~pv-v~v~ghvd~GKt~lld~~r~~~~~~~e-~ggitq~iga~~~~~~~~~~~~iDtPG 439 (884)
.|+ |.|+|.=+.||+||+-+|++.+++.-. .=|+|.++--..+ ...+.++||||
T Consensus 116 ~~i~v~vvG~PNVGKSSlIN~L~~~k~~~v~~~PG~Tk~~q~i~l---~~~i~L~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL---DKKVKLLDSPG 171 (172)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEEEE---CCCEEEEECCC
T ss_conf 655999983477425789988734744776599954766799995---89989996919
No 316
>pfam00735 Septin Septin. Members of this family include CDC3, CDC10, CDC11 and CDC12/Septin. Members of this family bind GTP. As regards the septins, these are polypeptides of 30-65kDa with three characteristic GTPase motifs (G-1, G-3 and G-4) that are similar to those of the Ras family. The G-4 motif is strictly conserved with a unique septin consensus of AKAD. Most septins are thought to have at least one coiled-coil region, which in some cases is necessary for intermolecular interactions that allow septins to polymerize to form rod-shaped complexes. In turn, these are arranged into tandem arrays to form filaments. They are multifunctional proteins, with roles in cytokinesis, sporulation, germ cell development, exocytosis and apoptosis.
Probab=97.03 E-value=0.0035 Score=39.72 Aligned_cols=111 Identities=23% Similarity=0.309 Sum_probs=73.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCC-------CCCEECCCEEEEE--CC--CCEEEEEECCCHHHHHHHH-------
Q ss_conf 8986236850446777886422210012-------3100012149995--17--8438888516615789998-------
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEI-------GGITQHIGAYQVA--YQ--GKNITFLDTPGHAAFYEMR------- 447 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~-------ggitq~iga~~~~--~~--~~~~~~iDtPGh~~f~~~r------- 447 (884)
+-|.|--..|||||+..|.++.+..... ---|-.|-++... -+ ...+|||||||.....+.-
T Consensus 7 imvvG~sGlGKTTfiNtL~~~~~~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtiiDTpGfGd~i~n~~~~~~I~ 86 (280)
T pfam00735 7 LMVVGESGLGKTTLINTLFLTDLYPERGIPGPSEKIKKTVEIKATTVEIEEDGVKLNLTVIDTPGFGDAIDNSNCWKPIV 86 (280)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 99977999978999999857857786678884335567753488999998899899999998998423345166699999
Q ss_pred ----------------HHHHHCC----CCEEEEEEC-CCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf ----------------6664206----805999983-6674023577789899709941561233124433
Q gi|254780787|r 448 ----------------ARGARVT----DIAVLVLAA-DEEIMPQAIESINHAKAADVSIIVAINKIDKLGA 497 (884)
Q Consensus 448 ----------------~rg~~~~----d~~ilvv~~-~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~ 497 (884)
..-..+. +.+++.|+. .||+.|--+++++.+-.+ +.+|-+|-|-|.+..
T Consensus 87 ~yI~~qf~~yl~eE~~i~R~~~~D~RVH~cLYFI~Ptgh~L~~lDi~~mk~Ls~~-vNvIPVIaKADtLT~ 156 (280)
T pfam00735 87 EYIDEQFEQYLRDESRLNRTSIVDNRVHCCLYFISPTGHGLKPLDVEFMKKLHEK-VNIIPVIAKADTLTP 156 (280)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCC-CCEEEEEECCCCCCH
T ss_conf 9999999999998647566777888437999975688888868899999987144-653666621455899
No 317
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=97.02 E-value=0.0011 Score=43.16 Aligned_cols=90 Identities=27% Similarity=0.424 Sum_probs=67.1
Q ss_pred CCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCCCCCCC----CCCCEECCCCCC----------CCCCCCCCCCCCCCCC
Q ss_conf 66416777886377620000000000000000025665----554200014665----------3221000012221111
Q gi|254780787|r 557 AEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILVVGDQ----WGKIRALFNDRG----------QGISKAVPSMPIEVLG 622 (884)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~v~~~~~~~~----------~~~~~~~~~~~~~~~~ 622 (884)
+.|+++|.....|.|++.++++++|+|+.||.++.+.. ..+||+++.+.. ..+++...+..+.+..
T Consensus 1 ~~gtVLEVK~e~GlG~TiDvIL~dG~L~~gD~Ivv~g~~gpivTkIRaLl~P~pl~EmR~k~~~~~~~ev~AA~GvKI~a 80 (110)
T cd03703 1 LQGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILA 80 (110)
T ss_pred CCEEEEEEEEECCCCEEEEEEEECCEECCCCEEEEECCCCCEEEEEEEECCCCCHHHHCCCCCCEECCEEEECCCCEEEC
T ss_conf 94799999960489568999999888848999999469998998886540478615620036841336799333657985
Q ss_pred CC-CCCCCCCEEEECCCCHHHHHHH
Q ss_conf 23-4755554043124203668999
Q gi|254780787|r 623 LQ-GMPMAGDKFGVVDSESRAREIA 646 (884)
Q Consensus 623 ~~-~~~~~~~~~~~~~~~~~~~~~~ 646 (884)
.. ....+|..+.++.+........
T Consensus 81 ~~Le~~laGs~l~v~~~~de~e~~k 105 (110)
T cd03703 81 PDLEKAIAGSPLLVVGPEDEIEELK 105 (110)
T ss_pred CCCCCCCCCCEEEEECCHHHHHHHH
T ss_conf 9987510897379958868899999
No 318
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=96.95 E-value=0.02 Score=34.57 Aligned_cols=67 Identities=22% Similarity=0.283 Sum_probs=43.7
Q ss_pred CEEEEEECCCH-------------HHHHHHHHHHHHCCC-CEEEEEECCCCCCHHHHHHHHHHHHCCC---CEEEECCCC
Q ss_conf 43888851661-------------578999866642068-0599998366740235777898997099---415612331
Q gi|254780787|r 430 KNITFLDTPGH-------------AAFYEMRARGARVTD-IAVLVLAADEEIMPQAIESINHAKAADV---SIIVAINKI 492 (884)
Q Consensus 430 ~~~~~iDtPGh-------------~~f~~~r~rg~~~~d-~~ilvv~~~~g~~~qt~e~~~~~~~~~~---p~iva~nk~ 492 (884)
..+||||.||- ....+|..+=.+--. |.+.||+|.. ...|-+++.+|+++.- ..|-+|+|+
T Consensus 125 p~LTlvDLPGl~~~~~~~q~~~~~~~v~~lv~~Yi~~p~tIILaVv~a~~--D~anq~~l~lAr~~Dp~g~RTiGVlTKp 202 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANV--DLANSDALKLAKEVDPQGERTIGVITKL 202 (240)
T ss_pred CCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCC--CHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 88544147541246789985679999999999984798806999840785--6766199999997199998289997353
Q ss_pred CCCCCC
Q ss_conf 244332
Q gi|254780787|r 493 DKLGAD 498 (884)
Q Consensus 493 d~~~~~ 498 (884)
|+....
T Consensus 203 Dl~~~g 208 (240)
T smart00053 203 DLMDEG 208 (240)
T ss_pred CCCCCC
T ss_conf 345777
No 319
>KOG0074 consensus
Probab=96.93 E-value=0.0071 Score=37.61 Aligned_cols=150 Identities=19% Similarity=0.186 Sum_probs=98.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCC-CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 89862368504467778864222100123100012149995178-43888851661578999866642068059999836
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQG-KNITFLDTPGHAAFYEMRARGARVTDIAVLVLAAD 464 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~-~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~ 464 (884)
+-.+|-=+.||||+|.-|..-++..--. |+--..-.+..++ .++++-|.-|....-..-+.=-.-.|+.|+|||..
T Consensus 20 illlGldnAGKTT~LKqL~sED~~hltp---T~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~ 96 (185)
T KOG0074 20 ILLLGLDNAGKTTFLKQLKSEDPRHLTP---TNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDST 96 (185)
T ss_pred EEEEECCCCCCHHHHHHHCCCCHHHCCC---CCCCCEEEEEECCCEEEEEEECCCCCCCCHHHHHHHHCCCEEEEEEECC
T ss_conf 9997227776130888871378333156---6885247876247078888852786655445665553055489998477
Q ss_pred CCC--C---HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 674--0---23577789899709941561233124433200022100001320001234740363110024774112210
Q gi|254780787|r 465 EEI--M---PQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDA 539 (884)
Q Consensus 465 ~g~--~---~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (884)
|-- + ..-.|-+.--|-+.+|..|..||-|++.+-+....+..++....-.. .......|+.+++++..+.+.
T Consensus 97 D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdR---swhIq~csals~eg~~dg~~w 173 (185)
T KOG0074 97 DEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDR---SWHIQECSALSLEGSTDGSDW 173 (185)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCHHHHHHHCCHHHHHHC---EEEEEECCCCCCCCCCCCCHH
T ss_conf 36768998899999852312200001001225678763426788774560022010---477331765455676674045
Q ss_pred HH
Q ss_conf 00
Q gi|254780787|r 540 IL 541 (884)
Q Consensus 540 ~~ 541 (884)
+.
T Consensus 174 v~ 175 (185)
T KOG0074 174 VQ 175 (185)
T ss_pred HH
T ss_conf 54
No 320
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.92 E-value=0.0064 Score=37.92 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=9.1
Q ss_pred HHCCCCEEEEEECCCC
Q ss_conf 4206805999983667
Q gi|254780787|r 451 ARVTDIAVLVLAADEE 466 (884)
Q Consensus 451 ~~~~d~~ilvv~~~~g 466 (884)
..+.++.++=|+|.+|
T Consensus 174 l~~~~~~~IPISAl~G 189 (613)
T PRK05506 174 LGLTDVTFIPISALKG 189 (613)
T ss_pred CCCCCCEEEECCCCCC
T ss_conf 7998875996735748
No 321
>pfam04548 AIG1 AIG1 family. Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria.
Probab=96.90 E-value=0.016 Score=35.17 Aligned_cols=110 Identities=20% Similarity=0.342 Sum_probs=74.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCC--CCCCEECCCEEEEECCCCEEEEEECCCHH-------HHHHHHHHHHHCCC-
Q ss_conf 898623685044677788642221001--23100012149995178438888516615-------78999866642068-
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGE--IGGITQHIGAYQVAYQGKNITFLDTPGHA-------AFYEMRARGARVTD- 455 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e--~ggitq~iga~~~~~~~~~~~~iDtPGh~-------~f~~~r~rg~~~~d- 455 (884)
+.+||-.-.||++.--.|.+..+-... +...|++.--..-.+++..+++|||||-- .......+..++|.
T Consensus 3 ivLlGktG~GKSstgNtILG~~~F~s~~~~~~vT~~c~~~~~~~~gr~v~ViDTPgl~~~~~~~~~~~~ei~~~~~l~~p 82 (200)
T pfam04548 3 IVLVGKTGNGKSATGNSILGRKAFESKLRAQGVTKTCQLVSRTWDGRIINVIDTPGLFDLSVSNDFISKEIIRCLLLAEP 82 (200)
T ss_pred EEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 99979999843655766179753357898888741368999998996899997866357677869999999999985589
Q ss_pred ---CEEEEEECCCCCCH---HHHHHHHHHHHCCC--CEEEECCCCCCCC
Q ss_conf ---05999983667402---35777898997099--4156123312443
Q gi|254780787|r 456 ---IAVLVLAADEEIMP---QAIESINHAKAADV--SIIVAINKIDKLG 496 (884)
Q Consensus 456 ---~~ilvv~~~~g~~~---qt~e~~~~~~~~~~--p~iva~nk~d~~~ 496 (884)
..+||+.... +.. ++++.|..+.-..+ -.||..+--|.+.
T Consensus 83 GpHa~LLVi~~~r-fT~ee~~~v~~i~~~FGe~~~~~tIVLFT~~D~L~ 130 (200)
T pfam04548 83 GPHAVLLVLSLGR-FTEEEEQALRTLQELFGSKILDYMIVVFTRKDDLE 130 (200)
T ss_pred CCCEEEEEEECCC-CCHHHHHHHHHHHHHHHHHHHHHEEEEEECHHHCC
T ss_conf 9857999986688-88899999999999975786800999997802149
No 322
>KOG0088 consensus
Probab=96.89 E-value=0.00099 Score=43.47 Aligned_cols=142 Identities=22% Similarity=0.287 Sum_probs=89.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCE---------EEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCC
Q ss_conf 8986236850446777886422210012310001214---------9995178438888516615789998666420680
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGA---------YQVAYQGKNITFLDTPGHAAFYEMRARGARVTDI 456 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga---------~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~ 456 (884)
+..||.==.|||+|.=..-..... -+||.. .++......+.+-||-|.+.|-++-.-=-.-+|.
T Consensus 16 ~VLLGEGCVGKtSLVLRy~EnkFn-------~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnG 88 (218)
T KOG0088 16 IVLLGEGCVGKTSLVLRYVENKFN-------CKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNG 88 (218)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC-------HHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCHHHHHCCCCEEEECCCC
T ss_conf 999748755606899999872323-------0467899988763304621113114321244457652357537707996
Q ss_pred EEEEEECCCCCCHHHHHHHHHHH--HCC--CCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 59999836674023577789899--709--94156123312443320002210000132000123474036311002477
Q gi|254780787|r 457 AVLVLAADEEIMPQAIESINHAK--AAD--VSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLN 532 (884)
Q Consensus 457 ~ilvv~~~~g~~~qt~e~~~~~~--~~~--~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (884)
|+||.|+.|-=.-|..-+|-+-- ..+ +-++|+-||||+.... .+- ..+...+.+.. ....+..||+...|
T Consensus 89 alLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR--~Vt--~qeAe~YAesv--GA~y~eTSAk~N~G 162 (218)
T KOG0088 89 ALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEER--QVT--RQEAEAYAESV--GALYMETSAKDNVG 162 (218)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHH--HHH--HHHHHHHHHHH--CHHHEECCCCCCCC
T ss_conf 2899864446889999999999998718835999953744678864--202--98899999863--33431111102437
Q ss_pred CCCCCCCH
Q ss_conf 41122100
Q gi|254780787|r 533 LDKLLDAI 540 (884)
Q Consensus 533 ~~~~~~~~ 540 (884)
+.+|++.+
T Consensus 163 i~elFe~L 170 (218)
T KOG0088 163 ISELFESL 170 (218)
T ss_pred HHHHHHHH
T ss_conf 99999999
No 323
>KOG0080 consensus
Probab=96.88 E-value=0.0027 Score=40.45 Aligned_cols=149 Identities=20% Similarity=0.167 Sum_probs=88.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEC--CCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 8986236850446777886422210012310001--21499951784388885166157899986664206805999983
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQH--IGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~--iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
+-|+|.--.||++||=..-....-.-.+-.|--. +....+.-...++++-||-|.|.|-.+-..=-.-+..+|||-|.
T Consensus 14 iLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDV 93 (209)
T KOG0080 14 ILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDV 93 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEECCCHHHHHCCCHHHHCCCCEEEEEEEC
T ss_conf 99981687657899999876436766773443457889998758267899874345276611687674557506999971
Q ss_pred CCCCCHHHHHHHH-HHHH----CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 6674023577789-8997----0994156123312443320002210000132000123474036311002477411221
Q gi|254780787|r 464 DEEIMPQAIESIN-HAKA----ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLD 538 (884)
Q Consensus 464 ~~g~~~qt~e~~~-~~~~----~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (884)
..-=.--..+.|- -+.. .++-.+++-||||+... ..-.+.+ -..+...+ ..+++..||++-+|+..-++
T Consensus 94 T~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~-R~V~reE---G~kfAr~h--~~LFiE~SAkt~~~V~~~Fe 167 (209)
T KOG0080 94 TSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESE-RVVDREE---GLKFARKH--RCLFIECSAKTRENVQCCFE 167 (209)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHC-CCCCHHH---HHHHHHHH--CCEEEECCHHHHCCHHHHHH
T ss_conf 223567759999998876448813767654254450120-2134888---78999860--82789825434301888999
Q ss_pred CH
Q ss_conf 00
Q gi|254780787|r 539 AI 540 (884)
Q Consensus 539 ~~ 540 (884)
.+
T Consensus 168 el 169 (209)
T KOG0080 168 EL 169 (209)
T ss_pred HH
T ss_conf 99
No 324
>TIGR01394 TypA_BipA GTP-binding protein TypA; InterPro: IPR006298 This bacterial (and Arabidopsis) protein, termed TypA or BipA, is a GTP-binding protein. It is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.; GO: 0005525 GTP binding, 0005622 intracellular.
Probab=96.88 E-value=0.0038 Score=39.45 Aligned_cols=127 Identities=23% Similarity=0.264 Sum_probs=91.8
Q ss_pred HHHCC-CEEEEECCC-CCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEEECCCCCCEE
Q ss_conf 43259-879996389-9989999999839859975026789999999996306940478888789997887338987078
Q gi|254780787|r 731 AKASG-AVIFGFNVR-ASSQARVLAIKDEIKILYYKIIYDLLDSIKDSMSELLSPEIRETFLGNAEVLEVFAVTKLGNVA 808 (884)
Q Consensus 731 A~~~~-a~Il~FnVk-v~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~l~~~~~~~~~g~a~v~~vF~~~k~~~i~ 808 (884)
||+-+ -.=|-++-+ ...+.++|+ -|||-|=. .--.|.....-+=.+.|-.+=.-+=.|.|+
T Consensus 167 ASa~~G~A~l~~~~dg~~~~~~~m~--------------PLFd~I~~---hvPaP~~~~d~PlQmlvt~ldy~~y~GRI~ 229 (609)
T TIGR01394 167 ASARAGWASLDKDKDGLDDDSEDMA--------------PLFDAILR---HVPAPKGDLDEPLQMLVTNLDYDEYLGRIA 229 (609)
T ss_pred HHHCCCCCCCCCCCCCCCCCHHHHH--------------HHHHHHHH---CCCCCCCCCCCCHHHEEEECCCCCCCCEEE
T ss_conf 6523672014466577887220178--------------99989864---068889888762421000110146776699
Q ss_pred EEEEEEEEEECCCEEEEEECC-EEEEEEEEHHHHHCC----HHHHHHHCCCEEEEEEECCEEEEECCEEEEEE
Q ss_conf 999852178469807996699-899822625766446----00668727976699972841100589899988
Q gi|254780787|r 809 GCKVSEGKVERGSGVRLIRNS-TVIYEGKLKTLKRFK----DEVSEVHAGQDCGMAFEKYDNIQAGDMIECFS 876 (884)
Q Consensus 809 G~~V~~G~i~~~~~~~v~r~~-~~i~~g~i~sl~~~k----~~v~ev~~g~ecgi~~~~~~~~~~gD~i~~~~ 876 (884)
=.+|..|+||+|..|.+++.. ..+-.|+|+.|=-|+ -++.+|..|+=|+|+ |+.|+.+||+|=+-+
T Consensus 230 ~GRv~~G~vk~Gq~V~~~~~d~g~~~~~ri~~L~~f~GL~R~~~d~A~AGDIvAva--G~~~~~IGeTiad~~ 300 (609)
T TIGR01394 230 IGRVHRGTVKKGQQVALMKRDDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVA--GLEDINIGETIADPE 300 (609)
T ss_pred EEEEEECEECCCCEEEEEECCCCEEEEEEEEEEEECCCCEEEECCCCCCCCEEEEE--CCCCCCCCCEECCCC
T ss_conf 99875056546864798724696897777645420157110004557987789990--779887352113333
No 325
>PRK10218 GTP-binding protein; Provisional
Probab=96.85 E-value=0.0025 Score=40.71 Aligned_cols=26 Identities=8% Similarity=0.137 Sum_probs=13.7
Q ss_pred EEHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 50267899999999963069404788
Q gi|254780787|r 763 YKIIYDLLDSIKDSMSELLSPEIRET 788 (884)
Q Consensus 763 ~~IIY~L~d~~~~~~~~~l~~~~~~~ 788 (884)
.-|++|.|+.|..|-.|-+..+....
T Consensus 462 ~g~~~~~f~~y~~~~~g~~~~r~~G~ 487 (607)
T PRK10218 462 TGLLYSTFSHYDDVRPGEVGQRQNGV 487 (607)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCEE
T ss_conf 18998602256778788756666513
No 326
>pfam05783 DLIC Dynein light intermediate chain (DLIC). This family consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo.
Probab=96.84 E-value=0.0064 Score=37.94 Aligned_cols=88 Identities=17% Similarity=0.251 Sum_probs=47.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEE--------CCCCEEEEEE-CCCHHHHHHHHHHHHHCCC
Q ss_conf 389862368504467778864222100123100012149995--------1784388885-1661578999866642068
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVA--------YQGKNITFLD-TPGHAAFYEMRARGARVTD 455 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~--------~~~~~~~~iD-tPGh~~f~~~r~rg~~~~d 455 (884)
-|-|||.-+.|||||+.+|.+.. +...|. -++-.++. .....+-+|| -|+|......-..--++.|
T Consensus 47 ~ILVLGd~~sGKttLi~kLQg~e--d~kkG~---gLeY~YldV~DedrDd~tRl~VWiLDgd~~~~~LLKfaLn~~si~~ 121 (490)
T pfam05783 47 NVLVLGEDGSGKTTLIAKLQGVE--HPKKGR---GLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFALNAESLAD 121 (490)
T ss_pred EEEEECCCCCCHHHHHHHHCCCC--CCCCCC---CCCEEEEECCCCCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCCCC
T ss_conf 28997789875589998852744--346687---5433888512465441100235884487011124315788545020
Q ss_pred C-EEEEEECCCC--CCHHHHHHHHH
Q ss_conf 0-5999983667--40235777898
Q gi|254780787|r 456 I-AVLVLAADEE--IMPQAIESINH 477 (884)
Q Consensus 456 ~-~ilvv~~~~g--~~~qt~e~~~~ 477 (884)
. +||++|..+. +|.|-..-|.+
T Consensus 122 TlIvI~lDms~PW~im~qL~~Wi~V 146 (490)
T pfam05783 122 TLVIFVVDMSRPWTIMESLQKWASV 146 (490)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 2899997257747899999999999
No 327
>PRK09563 rbgA ribosomal biogenesis GTPase; Reviewed
Probab=96.83 E-value=0.0026 Score=40.63 Aligned_cols=94 Identities=19% Similarity=0.225 Sum_probs=60.3
Q ss_pred CCHHHH-HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf 661578-9998666420680599998366740235777898997099415612331244332000221000013200012
Q gi|254780787|r 438 PGHAAF-YEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESM 516 (884)
Q Consensus 438 PGh~~f-~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~ 516 (884)
|||=+= .....+-...+|++|.|+||-+++...-.+-..++ .+-|+|+++||+|+.............. ..
T Consensus 8 PGHm~ka~r~l~~~l~~~DvileV~DAR~Pl~~~n~~l~~~~--~~K~~ilvlNK~DL~~~~~~~~w~~~~~------~~ 79 (282)
T PRK09563 8 PGHMAKARREIKENLKKVDVVIEVLDARIPLSSENPMIDKII--GNKPRLLVLNKSDLADPEVTKKWIEYFE------EQ 79 (282)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHH--CCCCEEEEEECCCCCCHHHHHHHHHHHH------HC
T ss_conf 889999999999998769999999765477675887599997--6897699975554889999999999997------04
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCHH
Q ss_conf 3474036311002477411221000
Q gi|254780787|r 517 GGDILDVEISAKNNLNLDKLLDAIL 541 (884)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (884)
....+.+|+..+.++..+++.+.
T Consensus 80 --~~~~~~~sa~~~~~~~~l~~~~~ 102 (282)
T PRK09563 80 --GVKALAINAKEGQGVKKILKAAK 102 (282)
T ss_pred --CCCEEEEECCCCCCHHHHHHHHH
T ss_conf --99569974667433889999999
No 328
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.81 E-value=0.0021 Score=41.21 Aligned_cols=94 Identities=19% Similarity=0.227 Sum_probs=59.6
Q ss_pred CCHHHH-HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf 661578-9998666420680599998366740235777898997099415612331244332000221000013200012
Q gi|254780787|r 438 PGHAAF-YEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESM 516 (884)
Q Consensus 438 PGh~~f-~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~ 516 (884)
|||=+= .....+-...+|++|.|+||-+.+...--+--.++ .+-|+|+++||+|+...+.......... ..
T Consensus 5 PGHm~ka~~~l~~~l~~~DvileV~DAR~Pl~~~n~~l~~~~--~~K~~ilvlNK~DL~~~~~~~~w~~~~~------~~ 76 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLADPAVTKQWLKYFE------QK 76 (276)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHH--CCCCEEEEEECCCCCCHHHHHHHHHHHH------HC
T ss_conf 588999999999998759999999867788786897599986--6996799973434599999999999998------43
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCHH
Q ss_conf 3474036311002477411221000
Q gi|254780787|r 517 GGDILDVEISAKNNLNLDKLLDAIL 541 (884)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (884)
....+.+|+..+.++.++++.+.
T Consensus 77 --~~~~~~~sa~~~~~~~~l~~~~~ 99 (276)
T TIGR03596 77 --GIKALAINAKKGKGVKKIIKAAK 99 (276)
T ss_pred --CCCEEEEHHCCCCCHHHHHHHHH
T ss_conf --99189864307453899999999
No 329
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.80 E-value=0.0026 Score=40.62 Aligned_cols=58 Identities=31% Similarity=0.484 Sum_probs=42.8
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHH-CCCCCCEECCCEEEEECCCCEEEEEECCCHH
Q ss_conf 553038986236850446777886422210-0123100012149995178438888516615
Q gi|254780787|r 381 IRPPVVTIMGHVDHGKTSLLDAIRKADVAK-GEIGGITQHIGAYQVAYQGKNITFLDTPGHA 441 (884)
Q Consensus 381 ~R~pvv~v~ghvd~GKt~lld~~r~~~~~~-~e~ggitq~iga~~~~~~~~~~~~iDtPGh~ 441 (884)
.++-.|.|+|.=+.||+||+-+|.+..++. |-.=|+|-++--+.+ ...+.++||||--
T Consensus 116 ~~~i~v~vVG~PNVGKSSlIN~L~~~k~~~v~~~PG~Tr~~q~i~l---~~~i~llDtPGvl 174 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL---SDGLELLDTPGIL 174 (276)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCEEEEEEE---CCCEEEECCCCCC
T ss_conf 7863899972798758999998736725877796542102589995---7977996688745
No 330
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.73 E-value=0.012 Score=35.94 Aligned_cols=144 Identities=19% Similarity=0.183 Sum_probs=80.2
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHH-HC--CCCCCEE---CCCEE--------------EEE------------CCC
Q ss_conf 5303898623685044677788642221-00--1231000---12149--------------995------------178
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKADVA-KG--EIGGITQ---HIGAY--------------QVA------------YQG 429 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~~~~-~~--e~ggitq---~iga~--------------~~~------------~~~ 429 (884)
..-||+++|----||||.+=+|=-..+. .+ -.|=||- .|||. ++- ...
T Consensus 209 ~~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQLk~Ya~ilgvp~~v~~~~~~l~~al~~~~~ 288 (412)
T PRK05703 209 QGGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQLKTYAKIMGIPVKVAYDPKELAKALEQLAN 288 (412)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCC
T ss_conf 67369998888875676999999999997299817999837677779999999999719737984799999999987158
Q ss_pred CEEEEEECCCHHHHHHHHHHH------HHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHH
Q ss_conf 438888516615789998666------42068059999836674023577789899709941561233124433200022
Q gi|254780787|r 430 KNITFLDTPGHAAFYEMRARG------ARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVR 503 (884)
Q Consensus 430 ~~~~~iDtPGh~~f~~~r~rg------~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~ 503 (884)
..+.||||||...+......= ..-.+-.+||+++. -.++.+..|-.....--+-=+.++|+|-........+
T Consensus 289 ~dlILIDTaG~s~~d~~~~~eL~~~~~~~~~~~~~LVlsat--~~~~dl~~i~~~f~~~~~~~lI~TKlDEt~~~G~il~ 366 (412)
T PRK05703 289 CDLILIDTAGRSQRDPRLISELKALIENSKPIDVYLVLSAT--TKYRDLKDIVKHFSRLPLDGLILTKLDETSSLGSILS 366 (412)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC--CCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHH
T ss_conf 99799968988978999999999998624887189997598--9989999999984679998799971128998629999
Q ss_pred HHHHCCCCCCCCCCCCCEEEEEEEC-CCCCCCCCCCCH
Q ss_conf 1000013200012347403631100-247741122100
Q gi|254780787|r 504 MSLLKHDVFVESMGGDILDVEISAK-NNLNLDKLLDAI 540 (884)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 540 (884)
.+... ..|+|.+ .|+++++-+...
T Consensus 367 -~~~~~------------~lplsy~t~GQ~VPeDi~~a 391 (412)
T PRK05703 367 -LLIES------------GLPISYLTDGQRVPDDIKVA 391 (412)
T ss_pred -HHHHH------------CCCEEEEECCCCCHHHHHCC
T ss_conf -99998------------87969994699972434228
No 331
>pfam04670 Gtr1_RagA Gtr1/RagA G protein conserved region. GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B.
Probab=96.70 E-value=0.04 Score=32.51 Aligned_cols=112 Identities=21% Similarity=0.308 Sum_probs=75.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCC--CCEECCCEEEEEC-CCCEEEEEECCCHHHHHHH-----HHHHHHCCCCE
Q ss_conf 89862368504467778864222100123--1000121499951-7843888851661578999-----86664206805
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIG--GITQHIGAYQVAY-QGKNITFLDTPGHAAFYEM-----RARGARVTDIA 457 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~g--gitq~iga~~~~~-~~~~~~~iDtPGh~~f~~~-----r~rg~~~~d~~ 457 (884)
|-.||.=-.||||+-.-| -.|....|.. |.|+++--..+.. ....+.+.|+||+.+|... +..--+-|...
T Consensus 2 iLLMG~~~sGKTSi~~vI-F~~~~p~dT~~L~~T~~ve~~~v~~~~~l~l~iwD~pGq~~f~e~~~~~~~e~if~~v~~l 80 (230)
T pfam04670 2 VLLMGLRGSGKSSMRSII-FSNYSPRDTLRLGATIDVEQSHVRFLGNLTLNLWDCPGQDDFMENYLTRQKEHIFSNVGVL 80 (230)
T ss_pred EEEECCCCCCHHHHHHHH-HCCCCHHHHCCCCCCCCEEEEEEECCCCCEEEEEECCCCHHHHHHHCCCCHHHHHHCCCEE
T ss_conf 787568999877769998-6799821412025777767787741687368999769835354412002235476447889
Q ss_pred EEEEECCCCCCH----HHHHHHHHHHHCCC--CEEEECCCCCCCCCC
Q ss_conf 999983667402----35777898997099--415612331244332
Q gi|254780787|r 458 VLVLAADEEIMP----QAIESINHAKAADV--SIIVAINKIDKLGAD 498 (884)
Q Consensus 458 ilvv~~~~g~~~----qt~e~~~~~~~~~~--p~iva~nk~d~~~~~ 498 (884)
|.|+|+...-.. .-..++..+.+.+- .|=|.|.|+|....+
T Consensus 81 IyV~D~q~~~~~~~l~~~~~~l~~~~~~sp~~~v~vfiHK~D~l~~d 127 (230)
T pfam04670 81 IYVFDVESREYEEDLATLVKIIEALYQYSPNAKVFVLIHKMDLLSED 127 (230)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHH
T ss_conf 99996888609999999999999999839998899999603588866
No 332
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=96.69 E-value=0.0087 Score=37.02 Aligned_cols=111 Identities=21% Similarity=0.354 Sum_probs=72.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCC--------CCCEECCCEEEEEC--C--CCEEEEEECCCHHHHHHHH------
Q ss_conf 8986236850446777886422210012--------31000121499951--7--8438888516615789998------
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEI--------GGITQHIGAYQVAY--Q--GKNITFLDTPGHAAFYEMR------ 447 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~--------ggitq~iga~~~~~--~--~~~~~~iDtPGh~~f~~~r------ 447 (884)
+-|.|--..||||+++.|-++.+..... ---|..|-.+.+.. + ...+|+|||||...+.+..
T Consensus 7 imVvG~sGlGKsTfiNtLf~~~~~~~~~~~~~~~~~~~~t~~i~~~~~~i~e~g~~l~LtviDTpGfGd~i~n~~~~~~I 86 (276)
T cd01850 7 IMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPI 86 (276)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCCHHHHHHHH
T ss_conf 99976899988999999747857787777881320568882589999999639989999999768841223603409999
Q ss_pred ------------------HHHHHCCC----CEEEEEEC-CCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf ------------------66642068----05999983-6674023577789899709941561233124433
Q gi|254780787|r 448 ------------------ARGARVTD----IAVLVLAA-DEEIMPQAIESINHAKAADVSIIVAINKIDKLGA 497 (884)
Q Consensus 448 ------------------~rg~~~~d----~~ilvv~~-~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~ 497 (884)
.|...+.| .+++-|.. .+|+.|--++.++.+- ..|.+|-+|-|-|.+..
T Consensus 87 ~~yI~~qf~~yl~eE~~i~R~~~~~D~RVH~cLYFI~Ptgh~L~~lDi~~mk~Ls-~~vNvIPVIaKADtlT~ 158 (276)
T cd01850 87 VDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLS-KRVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHC-CCCCEEEEEECCCCCCH
T ss_conf 9999999999999985314578887774489999967888888799999999962-75645667851666999
No 333
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.68 E-value=0.00061 Score=44.91 Aligned_cols=150 Identities=19% Similarity=0.160 Sum_probs=83.2
Q ss_pred CCCC-CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEE----------------------------CCCEEEE-----
Q ss_conf 2553-03898623685044677788642221001231000----------------------------1214999-----
Q gi|254780787|r 380 DIRP-PVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQ----------------------------HIGAYQV----- 425 (884)
Q Consensus 380 ~~R~-pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq----------------------------~iga~~~----- 425 (884)
..|+ -.|.|||-|-.|||+||.++-..--...-.+=||- |.-|..+
T Consensus 9 ~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~ 88 (202)
T COG0378 9 KNRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIE 88 (202)
T ss_pred HCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEECEEECHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 25864899961799867899999999999752776899640400655999973779806874038765886788999999
Q ss_pred ----ECCCCEEEEEECCCHHHHHHHHHHH-HHCCC-CEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
Q ss_conf ----5178438888516615789998666-42068-05999983667402357778989970994156123312443320
Q gi|254780787|r 426 ----AYQGKNITFLDTPGHAAFYEMRARG-ARVTD-IAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADP 499 (884)
Q Consensus 426 ----~~~~~~~~~iDtPGh~~f~~~r~rg-~~~~d-~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~ 499 (884)
..+..-+.||-+-| ||..+- -.+.| +.|.|||..+|-.---.-.=- ... --+++|||+|+...-.
T Consensus 89 ~l~~~~~~~Dll~iEs~G-----NL~~~~sp~L~d~~~v~VidvteGe~~P~K~gP~---i~~-aDllVInK~DLa~~v~ 159 (202)
T COG0378 89 ELVLDFPDLDLLFIESVG-----NLVCPFSPDLGDHLRVVVIDVTEGEDIPRKGGPG---IFK-ADLLVINKTDLAPYVG 159 (202)
T ss_pred HHHHCCCCCCEEEEECCC-----CEECCCCCCHHHCEEEEEEECCCCCCCCCCCCCC---EEE-EEEEEEEHHHHHHHHC
T ss_conf 986317767789992376-----4324468041304699999878888876557996---467-4189985677387728
Q ss_pred CHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHC
Q ss_conf 0022100001320001234740363110024774112210000
Q gi|254780787|r 500 QKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAILL 542 (884)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (884)
..+..+.........+.+++.+|+++|+|+++.++.+..
T Consensus 160 ----~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~ 198 (202)
T COG0378 160 ----ADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEP 198 (202)
T ss_pred ----CCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf ----669999999998499998899847878689999999876
No 334
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=96.66 E-value=0.02 Score=34.57 Aligned_cols=102 Identities=22% Similarity=0.304 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEEECCC--------CCCEEEEEEEEEEEECCCEEEEE-----E--CCEEE
Q ss_conf 899999999963069404788887899978873389--------87078999852178469807996-----6--99899
Q gi|254780787|r 768 DLLDSIKDSMSELLSPEIRETFLGNAEVLEVFAVTK--------LGNVAGCKVSEGKVERGSGVRLI-----R--NSTVI 832 (884)
Q Consensus 768 ~L~d~~~~~~~~~l~~~~~~~~~g~a~v~~vF~~~k--------~~~i~G~~V~~G~i~~~~~~~v~-----r--~~~~i 832 (884)
.|++.+.+++ -.|.....-....-|-.+|.+++ .|.|+|-.+..|.++.|..+-+. + ++++.
T Consensus 226 ~L~~~i~~~i---p~P~R~~~~~~~m~I~rsFdIngpg~~~~~lrGtVvtGti~~G~lkvGDeIEI~PG~~~~~~~~k~~ 302 (460)
T PTZ00327 226 VLLEYICTQI---PIPKRDLTSPPRMIVIRSFDVNKPGEDIENLRGGVAGGSILQGVLKVGDEVEIRPGIVSKDSGGKFT 302 (460)
T ss_pred HHHHHHHHHC---CCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEECCCEEEEECCCEEE
T ss_conf 9999999758---9998888999537487467157898665676545998899881793699899826753241586599
Q ss_pred EEE---EEHHHHHCCHHHHHHHCCCEEEEE--EE-CC--EEEEECCEE
Q ss_conf 822---625766446006687279766999--72-84--110058989
Q gi|254780787|r 833 YEG---KLKTLKRFKDEVSEVHAGQDCGMA--FE-KY--DNIQAGDMI 872 (884)
Q Consensus 833 ~~g---~i~sl~~~k~~v~ev~~g~ecgi~--~~-~~--~~~~~gD~i 872 (884)
|.. +|.||+.+..++.++.-|-=+||+ ++ ++ .|...|-++
T Consensus 303 ~~pi~t~I~sl~~~~~~l~~a~pGGligiGT~Ldp~ltr~D~l~GqVl 350 (460)
T PTZ00327 303 CSPIRTRIVSLKAEQNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVL 350 (460)
T ss_pred EEEEEEEEEEEEECCCCHHHCCCCCEEEECCCCCCCCCCCCCCCCCEE
T ss_conf 999999999887258524212567536532201466211310146778
No 335
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=96.65 E-value=0.0028 Score=40.33 Aligned_cols=69 Identities=29% Similarity=0.446 Sum_probs=57.2
Q ss_pred CCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHC----CHHHHHHHCCCEEEEEEECCEEEEECCEE
Q ss_conf 898707899985217846980799669989982262576644----60066872797669997284110058989
Q gi|254780787|r 802 TKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRF----KDEVSEVHAGQDCGMAFEKYDNIQAGDMI 872 (884)
Q Consensus 802 ~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~----k~~v~ev~~g~ecgi~~~~~~~~~~gD~i 872 (884)
+-.|.++=++|..|+|++|..|.+++++.....++|.+|-.+ +.+|.|+..|.=|+|. +..++.+||.|
T Consensus 12 ~~~Gri~~~RV~sG~lk~gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGDIvai~--Gl~~~~iGdTl 84 (86)
T cd03691 12 DYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIA--GIEDITIGDTI 84 (86)
T ss_pred CCCCEEEEEEEECCCCCCCCEEEEECCCCCEEECCCEEEEEEECCCCEEEEEECCCCEEEEC--CCCCCCCCCCC
T ss_conf 87755999998469517999899961678267622307689606985697187599999994--88888654713
No 336
>PRK09563 rbgA ribosomal biogenesis GTPase; Reviewed
Probab=96.64 E-value=0.0036 Score=39.65 Aligned_cols=57 Identities=30% Similarity=0.476 Sum_probs=41.6
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHC-CCCCCEECCCEEEEECCCCEEEEEECCCH
Q ss_conf 5530389862368504467778864222100-12310001214999517843888851661
Q gi|254780787|r 381 IRPPVVTIMGHVDHGKTSLLDAIRKADVAKG-EIGGITQHIGAYQVAYQGKNITFLDTPGH 440 (884)
Q Consensus 381 ~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~-e~ggitq~iga~~~~~~~~~~~~iDtPGh 440 (884)
.++--|.|+|.=+.||+||+-+|.+.+++.- -.=|.|-++--+.+ ...+.++||||=
T Consensus 119 ~~~i~v~vvG~PNVGKSSlIN~L~~~k~~~v~~~PG~Tk~~q~v~l---~~~i~L~DtPGv 176 (282)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKSQQWIKL---GKGLELLDTPGI 176 (282)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEE---CCCEEEECCCCC
T ss_conf 7863899970697767999998747705876796541002589995---798899668874
No 337
>KOG1490 consensus
Probab=96.63 E-value=0.0033 Score=39.91 Aligned_cols=152 Identities=18% Similarity=0.198 Sum_probs=81.1
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHH---HHHHHHH------HH
Q ss_conf 53038986236850446777886422210012310001214999517843888851661578---9998666------42
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAF---YEMRARG------AR 452 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f---~~~r~rg------~~ 452 (884)
-.+-.||.|--+.||++++-++....|.-.-.---|-.+=.-++...-.+..+|||||--+- -.+..-. |.
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAH 246 (620)
T KOG1490 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAH 246 (620)
T ss_pred CCCEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 86717985278877376435520155555776655101210020324023440388412476054321799999999987
Q ss_pred CCCCEEEEEECCC----CCCH--HHHHHHHHHHHCCCCEEEECCCCCCCCC-CCCHHHHHHHCCCCCCCCCCCCCEEEEE
Q ss_conf 0680599998366----7402--3577789899709941561233124433-2000221000013200012347403631
Q gi|254780787|r 453 VTDIAVLVLAADE----EIMP--QAIESINHAKAADVSIIVAINKIDKLGA-DPQKVRMSLLKHDVFVESMGGDILDVEI 525 (884)
Q Consensus 453 ~~d~~ilvv~~~~----g~~~--qt~e~~~~~~~~~~p~iva~nk~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (884)
+--.++++.|+-+ ++.. +-..+|+-+. .+-|.|+++||||.... +.+..++++++... .-+++..+..
T Consensus 247 LraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~----~~~~v~v~~t 321 (620)
T KOG1490 247 LRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRPEDLDQKNQELLQTII----DDGNVKVVQT 321 (620)
T ss_pred HHHHHEEEEECHHHHCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHH----HCCCCEEEEE
T ss_conf 565641134322120888999999998767886-28846999520025686566878899999988----6048338873
Q ss_pred EECCCCCCCCCCC
Q ss_conf 1002477411221
Q gi|254780787|r 526 SAKNNLNLDKLLD 538 (884)
Q Consensus 526 ~~~~~~~~~~~~~ 538 (884)
|.++-+|+...-.
T Consensus 322 S~~~eegVm~Vrt 334 (620)
T KOG1490 322 SCVQEEGVMDVRT 334 (620)
T ss_pred CCCCHHCEEEHHH
T ss_conf 2554002000777
No 338
>PRK13796 GTP-binding protein YqeH; Provisional
Probab=96.62 E-value=0.0037 Score=39.59 Aligned_cols=94 Identities=23% Similarity=0.254 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCC---CCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC--CHHHHHHHCCCCCCCC
Q ss_conf 5789998666420680599998366---7402357778989970994156123312443320--0022100001320001
Q gi|254780787|r 441 AAFYEMRARGARVTDIAVLVLAADE---EIMPQAIESINHAKAADVSIIVAINKIDKLGADP--QKVRMSLLKHDVFVES 515 (884)
Q Consensus 441 ~~f~~~r~rg~~~~d~~ilvv~~~~---g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~--~~~~~~~~~~~~~~~~ 515 (884)
+.|.++...-..-.-++++|||+.| .+-|.-.+ ++ .+.|+|+++||+|++-.+. .++..-+.... .+
T Consensus 59 ~d~~~~l~~i~~~~~lvv~VvDi~Df~gS~~~~l~~---~i--g~~~vilV~NKvDLLP~~~~~~~~~~wv~~~~---~~ 130 (367)
T PRK13796 59 DDFLRLLNGIGDSDALVVNVVDIFDFNGSWIPGLHR---FV--GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEA---KE 130 (367)
T ss_pred HHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHH---HH--CCCCEEEEEECHHCCCCCCCHHHHHHHHHHHH---HH
T ss_conf 999999986253670899999744577651350898---71--89848999982333887678789999999999---97
Q ss_pred CC-CCCEEEEEEECCCCCCCCCCCCHHC
Q ss_conf 23-4740363110024774112210000
Q gi|254780787|r 516 MG-GDILDVEISAKNNLNLDKLLDAILL 542 (884)
Q Consensus 516 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (884)
.| .-.....+||+++.|+++|++.+..
T Consensus 131 ~gl~~~dV~lvSak~g~gv~~L~~~i~~ 158 (367)
T PRK13796 131 LGLRPVDVVLISAQKGQGIDELLDAIEK 158 (367)
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 5998552899946578899999999998
No 339
>KOG1707 consensus
Probab=96.58 E-value=0.0064 Score=37.92 Aligned_cols=149 Identities=19% Similarity=0.189 Sum_probs=88.3
Q ss_pred CCCCE-EEEEECCCCCHHHHHHHHHH-HHHH--HCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCC
Q ss_conf 55303-89862368504467778864-2221--00123100012149995178438888516615789998666420680
Q gi|254780787|r 381 IRPPV-VTIMGHVDHGKTSLLDAIRK-ADVA--KGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDI 456 (884)
Q Consensus 381 ~R~pv-v~v~ghvd~GKt~lld~~r~-~~~~--~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~ 456 (884)
.|..| |.+.|---.|||+|+=+|-. +.+- ..-+--||.- ..+..+....+++||+--+.--.--.--+.-+|.
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP---advtPe~vpt~ivD~ss~~~~~~~l~~EirkA~v 82 (625)
T KOG1707 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP---ADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADV 82 (625)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC---CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCE
T ss_conf 7552599997788866899999987633545345557761158---7567676721887436664256889999864588
Q ss_pred EEEEEECCCCCCHHHHHHHH-----HHHH-----CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEE
Q ss_conf 59999836674023577789-----8997-----0994156123312443320002210000132000123474036311
Q gi|254780787|r 457 AVLVLAADEEIMPQAIESIN-----HAKA-----ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEIS 526 (884)
Q Consensus 457 ~ilvv~~~~g~~~qt~e~~~-----~~~~-----~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (884)
+.||-+-++ |-|++.|. |.+. .++|+|++-||+|....+....... ...+-..+..-.-.+.+|
T Consensus 83 i~lvyavd~---~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~---~~pim~~f~EiEtciecS 156 (625)
T KOG1707 83 ICLVYAVDD---ESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVN---TLPIMIAFAEIETCIECS 156 (625)
T ss_pred EEEEEECCC---HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCHHHH---HHHHHHHHHHHHHHHHHH
T ss_conf 999985387---68765444322365644157776687799830357755455641577---789998757777887654
Q ss_pred ECCCCCCCCCCC
Q ss_conf 002477411221
Q gi|254780787|r 527 AKNNLNLDKLLD 538 (884)
Q Consensus 527 ~~~~~~~~~~~~ 538 (884)
|++..++.+++.
T Consensus 157 A~~~~n~~e~fY 168 (625)
T KOG1707 157 ALTLANVSELFY 168 (625)
T ss_pred HHHHHHHHHHHH
T ss_conf 654411377654
No 340
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.56 E-value=0.0049 Score=38.73 Aligned_cols=55 Identities=29% Similarity=0.442 Sum_probs=39.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHC-CCCCCEECCCEEEEECCCCEEEEEECCC
Q ss_conf 530389862368504467778864222100-1231000121499951784388885166
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKADVAKG-EIGGITQHIGAYQVAYQGKNITFLDTPG 439 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~~~~~~-e~ggitq~iga~~~~~~~~~~~~iDtPG 439 (884)
++--|.|+|.=+.||+||+-+|++.+++.- --=|+|.+..- +.. ...+.+|||||
T Consensus 101 ~~i~v~ivG~PNVGKSSlIN~L~g~k~~~vs~~PG~Tr~~q~--i~~-~~~i~liDTPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQY--ITL-MKRIYLIDCPG 156 (157)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEE--EEE-CCCEEEEECCC
T ss_conf 646999982588533688988726735886598833777799--996-89999996909
No 341
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=96.56 E-value=0.025 Score=33.90 Aligned_cols=111 Identities=16% Similarity=0.276 Sum_probs=75.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCC--CCCCEECCCEEEEECCCCEEEEEECCCHH-------HHHHHHHHHHHCCC-
Q ss_conf 898623685044677788642221001--23100012149995178438888516615-------78999866642068-
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGE--IGGITQHIGAYQVAYQGKNITFLDTPGHA-------AFYEMRARGARVTD- 455 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e--~ggitq~iga~~~~~~~~~~~~iDtPGh~-------~f~~~r~rg~~~~d- 455 (884)
+..+|---.||++.--.|.+.++-..+ +..+|+.---....+.+..+++|||||-- .......+..++|.
T Consensus 3 IvLlGktGsGKSstgNtILG~~~F~s~~~~~svT~~c~~~~~~~~gr~v~VIDTPg~~dt~~~~~~~~~ei~~~~~l~~p 82 (196)
T cd01852 3 LVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAP 82 (196)
T ss_pred EEEECCCCCCCHHHHEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 99978999861534032568766678899998755888888998893799996776356558979999999999984389
Q ss_pred ---CEEEEEECCCCCCHHHHHHH---HHHHHCC--CCEEEECCCCCCCCC
Q ss_conf ---05999983667402357778---9899709--941561233124433
Q gi|254780787|r 456 ---IAVLVLAADEEIMPQAIESI---NHAKAAD--VSIIVAINKIDKLGA 497 (884)
Q Consensus 456 ---~~ilvv~~~~g~~~qt~e~~---~~~~~~~--~p~iva~nk~d~~~~ 497 (884)
..+||+.+.. +..+-.+.+ ..+.--+ --.||..+--|.+..
T Consensus 83 GpHa~LLVi~~~r-fT~ee~~~v~~i~~~FGe~~~~~tivLFT~~D~L~~ 131 (196)
T cd01852 83 GPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG 131 (196)
T ss_pred CCEEEEEEEECCC-CCHHHHHHHHHHHHHHCHHHHHHEEEEEECCCCCCC
T ss_conf 9739999997898-898999999999999777868528999965401168
No 342
>KOG3883 consensus
Probab=96.54 E-value=0.012 Score=35.95 Aligned_cols=126 Identities=23% Similarity=0.251 Sum_probs=84.7
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEE-CCCEEEEECCCC---EEEEEECCCHHHH-HHHHHHHHHCCCC
Q ss_conf 5303898623685044677788642221001231000-121499951784---3888851661578-9998666420680
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQ-HIGAYQVAYQGK---NITFLDTPGHAAF-YEMRARGARVTDI 456 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq-~iga~~~~~~~~---~~~~iDtPGh~~f-~~~r~rg~~~~d~ 456 (884)
+.-=|.|.|----|||.||.-|.--|..-|-.-.-|+ .|=.-.+.++.. .+.|-||-|-... ..+-..-.+.+|.
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHEEEEEECCCCHHHEEEEEECCCCCCCHHHHHHHHHCCCCE
T ss_conf 64079997774522899999998516788976666344224676406878101688865244557600202767105765
Q ss_pred EEEEEECCCCCCHHHHHHHHH-----HHHCCCCEEEECCCCCCCCCCCCHHHHHHHCC
Q ss_conf 599998366740235777898-----99709941561233124433200022100001
Q gi|254780787|r 457 AVLVLAADEEIMPQAIESINH-----AKAADVSIIVAINKIDKLGADPQKVRMSLLKH 509 (884)
Q Consensus 457 ~ilvv~~~~g~~~qt~e~~~~-----~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~ 509 (884)
-+||-|.|+--.-|-.|-|+- -.+..+|++|..||+|+. ++..+...++++
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~--~p~~vd~d~A~~ 143 (198)
T KOG3883 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA--EPREVDMDVAQI 143 (198)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHCC--CCHHCCHHHHHH
T ss_conf 79996379988988999999998625565512289973001013--640127889988
No 343
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.53 E-value=0.025 Score=33.86 Aligned_cols=106 Identities=22% Similarity=0.251 Sum_probs=62.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCC-CCCCE---ECCCE---------------EEEE-----------------CC
Q ss_conf 3898623685044677788642221001-23100---01214---------------9995-----------------17
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADVAKGE-IGGIT---QHIGA---------------YQVA-----------------YQ 428 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~~~~e-~ggit---q~iga---------------~~~~-----------------~~ 428 (884)
||.++|---.||||.+-+|=..-...+. .+=|| ..+|| +... ..
T Consensus 2 Vi~lvGptGvGKTTTiaKLA~~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREE 81 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 99998999998899999999999976992899974887577999999999974985992277558799999999998756
Q ss_pred CCEEEEEECCCH--HHHHHH---HH-HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCC--CC-EEEECCCCCCC
Q ss_conf 843888851661--578999---86-6642068059999836674023577789899709--94-15612331244
Q gi|254780787|r 429 GKNITFLDTPGH--AAFYEM---RA-RGARVTDIAVLVLAADEEIMPQAIESINHAKAAD--VS-IIVAINKIDKL 495 (884)
Q Consensus 429 ~~~~~~iDtPGh--~~f~~~---r~-rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~--~p-~iva~nk~d~~ 495 (884)
..-+.||||||. -...-| +. ..+.-.|-.+||+|++.| .++++.++.+. ++ -=+.++|+|-.
T Consensus 82 ~~D~IlIDTaGr~~~d~~~~~el~~l~~~~~p~~~~LVl~a~~~-----~~~~~~~~~f~~~~~~~~~I~TKlDet 152 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTG-----QDAVNQAKAFNEALGITGVILTKLDGD 152 (173)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCH-----HHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 89989997888787999999999999864489721574246550-----658999999874279978999714389
No 344
>PRK12288 ribosome-associated GTPase; Reviewed
Probab=96.52 E-value=0.0041 Score=39.27 Aligned_cols=84 Identities=20% Similarity=0.226 Sum_probs=54.4
Q ss_pred HHCCCCEEEEEECCCCCCHHHHH-HHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 42068059999836674023577-78989970994156123312443320002210000132000123474036311002
Q gi|254780787|r 451 ARVTDIAVLVLAADEEIMPQAIE-SINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKN 529 (884)
Q Consensus 451 ~~~~d~~ilvv~~~~g~~~qt~e-~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (884)
|.-.|-+++|+++.-.+.+.-++ .+-.+...+++.||++||+|+...........++. .-..+ ++..+.+|+.+
T Consensus 120 AANIDqvlIV~A~~P~~~~~liDRyLv~ae~~~I~pvIvlNK~DL~~~~~~~~~~~~l~---~Y~~l--GY~v~~~Sa~~ 194 (344)
T PRK12288 120 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEERPFVNEQLD---IYRNI--GYRVLMVSSHT 194 (344)
T ss_pred EEECCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHCCCHHHHHHHHHHHH---HHHHC--CCEEEEEECCC
T ss_conf 97168899999689998978999999999986997799973144089778999999999---99867--97399973688
Q ss_pred CCCCCCCCCC
Q ss_conf 4774112210
Q gi|254780787|r 530 NLNLDKLLDA 539 (884)
Q Consensus 530 ~~~~~~~~~~ 539 (884)
+.+++.|...
T Consensus 195 ~~gl~~L~~~ 204 (344)
T PRK12288 195 GEGLEPLEAA 204 (344)
T ss_pred CCCHHHHHHH
T ss_conf 6289999998
No 345
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.51 E-value=0.0048 Score=38.78 Aligned_cols=93 Identities=19% Similarity=0.141 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC--CHHHH----HHHCCCCCCC
Q ss_conf 57899986664206805999983667402357778989970994156123312443320--00221----0000132000
Q gi|254780787|r 441 AAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADP--QKVRM----SLLKHDVFVE 514 (884)
Q Consensus 441 ~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~--~~~~~----~~~~~~~~~~ 514 (884)
++|.++...-..-..++++|||+.|=-..=--+...++. +-|+++++||+|++..+. .++.. .+.+.++.
T Consensus 51 ~d~~~~l~~i~~~~~lVv~VvDi~Df~gS~~~~l~~~~~--~~~v~lV~NK~DLLP~~~~~~~i~~wv~~~~~~~gl~-- 126 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVG--GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLK-- 126 (360)
T ss_pred HHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHC--CCCEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHCCCC--
T ss_conf 999999987423683799998641477653464999838--9858999980542887678799999999999985998--
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCCHH
Q ss_conf 123474036311002477411221000
Q gi|254780787|r 515 SMGGDILDVEISAKNNLNLDKLLDAIL 541 (884)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (884)
.....-+||+++.|++.|++.+.
T Consensus 127 ----~~~V~lvSa~~g~gi~~l~~~i~ 149 (360)
T TIGR03597 127 ----PVDIILVSAKKGNGIDELLDKIK 149 (360)
T ss_pred ----CCCEEEEECCCCCCHHHHHHHHH
T ss_conf ----36689996888989999999999
No 346
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.49 E-value=0.0055 Score=38.40 Aligned_cols=98 Identities=20% Similarity=0.172 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCC---CCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHH-HHHCCCCCCCC
Q ss_conf 157899986664206805999983667---40235777898997099415612331244332000221-00001320001
Q gi|254780787|r 440 HAAFYEMRARGARVTDIAVLVLAADEE---IMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRM-SLLKHDVFVES 515 (884)
Q Consensus 440 h~~f~~~r~rg~~~~d~~ilvv~~~~g---~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~-~~~~~~~~~~~ 515 (884)
+..|..+...-..-.-++++|||+.|= +-|.-.+ ...+-|+++++||+|++..+...... ...........
T Consensus 21 ~~~~~~~l~~~~~~~~lVv~VvDi~Df~~S~~~~l~~-----~~~~~~v~lV~NK~DLLp~~~~~~~~~~~~~~~~~~~~ 95 (190)
T cd01855 21 EDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL-----FGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGL 95 (190)
T ss_pred HHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHH-----HCCCCCEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 0368999985246784599997543576444655798-----61798689999815517887658888989999975015
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCHHC
Q ss_conf 234740363110024774112210000
Q gi|254780787|r 516 MGGDILDVEISAKNNLNLDKLLDAILL 542 (884)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (884)
...-.....+||.++.|+++|++.+..
T Consensus 96 ~~~~~~v~lvSa~~~~gi~~L~~~i~~ 122 (190)
T cd01855 96 GLKPKDVILISAKKGWGVEELINAIKK 122 (190)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 998431799766578698999999999
No 347
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=96.44 E-value=0.011 Score=36.35 Aligned_cols=116 Identities=20% Similarity=0.168 Sum_probs=71.1
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCHHCCCCCCCC------CCCC-CCCCCCEEEEE--EEEC-CCCCCHHHHHHCCHHHCC
Q ss_conf 347403631100247741122100002333342------0003-48666416777--8863-776200000000000000
Q gi|254780787|r 517 GGDILDVEISAKNNLNLDKLLDAILLQAEMLDL------KTSI-NRKAEGIVVEG--KLDR-GRGPVVTVLVQKGTLSKG 586 (884)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~--~~~~-~~~~~~~~~~~~g~~~~~ 586 (884)
|.-++.+..||+...|+..||+++..+.-.... ...| ..+.+|.|+-. .+|. .+|.++-+.|+.|+++.|
T Consensus 246 G~l~PVf~GSA~~n~GV~~LLd~iv~~~PsP~~r~~~~~~v~p~~~~fsa~VFKiqanmDP~h~griaf~RV~SG~l~~g 325 (526)
T PRK00741 246 GELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDERVVEPTEEKFSGFVFKIQANMDPKHRDRIAFMRVCSGKFEKG 325 (526)
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEEEEECCC
T ss_conf 98028996200036569999999999779987777776544787777435999998403754254379999751188579
Q ss_pred CCCCCCCC-----CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 00025665-----554200014665322100001222111123475555404
Q gi|254780787|r 587 NILVVGDQ-----WGKIRALFNDRGQGISKAVPSMPIEVLGLQGMPMAGDKF 633 (884)
Q Consensus 587 ~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (884)
+.+.-... .+++..+....-..+.++.++.++.+.++... ..||.+
T Consensus 326 ~~v~n~r~gk~eri~~l~~~~g~~r~~V~ea~AGDIvgl~~~~~~-~tGDTL 376 (526)
T PRK00741 326 MKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGTI-QIGDTF 376 (526)
T ss_pred CEEEECCCCCEEEHHHHHHHHCCCCEEEEEECCCCEEEECCCCCC-CCCCEE
T ss_conf 989852579536632677874435235138769989997166630-037552
No 348
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.44 E-value=0.0035 Score=39.74 Aligned_cols=80 Identities=23% Similarity=0.281 Sum_probs=40.8
Q ss_pred CCCEEEEEECCC-CCCHHHHH-HHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 680599998366-74023577-7898997099415612331244332000221000013200012347403631100247
Q gi|254780787|r 454 TDIAVLVLAADE-EIMPQAIE-SINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNL 531 (884)
Q Consensus 454 ~d~~ilvv~~~~-g~~~qt~e-~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (884)
.|-+||||++.+ .+.+.-++ -+-++...++..||.|||+|+........ .+ .......+ .+..+-+|+..+.
T Consensus 80 ~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~-~~---~~~~y~~~--gy~v~~~s~~~~~ 153 (301)
T COG1162 80 NDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAV-KE---LLREYEDI--GYPVLFVSAKNGD 153 (301)
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHH-HH---HHHHHHHC--CEEEEEECCCCCC
T ss_conf 551999996268998988999999999776995799997533676167789-99---99999867--9359995376765
Q ss_pred CCCCCCCC
Q ss_conf 74112210
Q gi|254780787|r 532 NLDKLLDA 539 (884)
Q Consensus 532 ~~~~~~~~ 539 (884)
+++.|.+.
T Consensus 154 ~~~~l~~~ 161 (301)
T COG1162 154 GLEELAEL 161 (301)
T ss_pred CHHHHHHH
T ss_conf 58999997
No 349
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=96.43 E-value=0.0065 Score=37.90 Aligned_cols=71 Identities=23% Similarity=0.301 Sum_probs=55.9
Q ss_pred EEEEC---CCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHH----CCHHHHHHHCCCEEEEEEECCEEEEEC
Q ss_conf 88733---89870789998521784698079966998998226257664----460066872797669997284110058
Q gi|254780787|r 797 EVFAV---TKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKR----FKDEVSEVHAGQDCGMAFEKYDNIQAG 869 (884)
Q Consensus 797 ~vF~~---~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~----~k~~v~ev~~g~ecgi~~~~~~~~~~g 869 (884)
.||++ +..|.++=++|.+|+|++|..+.+.+.+... +|..|.. ...+|.++..|+=|+ +-+..++..|
T Consensus 4 ~VFK~~~d~~~Gri~~~RV~~G~l~~g~~v~~~~~~~~~---kv~~l~~~~g~~~~~v~~~~aGdI~a--i~gl~~~~~G 78 (83)
T cd04088 4 LVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKE---RVGRLLRMHGKKQEEVEEAGAGDIGA--VAGLKDTATG 78 (83)
T ss_pred EEEEEEECCCCCEEEEEEEECCEECCCCEEEECCCCEEE---EECEEEEEECCCCEECCEECCCCEEE--EECCCCCCCC
T ss_conf 999766559888699999958998679758860651048---82204788569823946888999999--9588887056
Q ss_pred CEE
Q ss_conf 989
Q gi|254780787|r 870 DMI 872 (884)
Q Consensus 870 D~i 872 (884)
|+|
T Consensus 79 DTl 81 (83)
T cd04088 79 DTL 81 (83)
T ss_pred CCC
T ss_conf 753
No 350
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=96.40 E-value=0.0071 Score=37.62 Aligned_cols=54 Identities=26% Similarity=0.413 Sum_probs=40.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHH-CCCCCCEECCCEEEEECCCCEEEEEECCCH
Q ss_conf 038986236850446777886422210-012310001214999517843888851661
Q gi|254780787|r 384 PVVTIMGHVDHGKTSLLDAIRKADVAK-GEIGGITQHIGAYQVAYQGKNITFLDTPGH 440 (884)
Q Consensus 384 pvv~v~ghvd~GKt~lld~~r~~~~~~-~e~ggitq~iga~~~~~~~~~~~~iDtPGh 440 (884)
..|.|+|.=+.||+||+-+|++.+.+. +..=|+|-++.-+.+ ...+.+|||||=
T Consensus 84 ~~i~ivG~PNVGKSSlIN~L~g~k~~~v~~~PG~Tr~~~~i~~---~~~i~liDTPGi 138 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL---TPTITLCDCPGL 138 (141)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCEEEEEE---CCCEEEEECCCC
T ss_conf 2689977888669999999858866876599941576689996---899999989886
No 351
>PRK12289 ribosome-associated GTPase; Reviewed
Probab=96.29 E-value=0.0072 Score=37.57 Aligned_cols=82 Identities=22% Similarity=0.305 Sum_probs=56.0
Q ss_pred HHCCCCEEEEEECCC-CCCHHHHH-HHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 420680599998366-74023577-7898997099415612331244332000221000013200012347403631100
Q gi|254780787|r 451 ARVTDIAVLVLAADE-EIMPQAIE-SINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAK 528 (884)
Q Consensus 451 ~~~~d~~ilvv~~~~-g~~~qt~e-~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (884)
.+-.|-++||+++.+ -+.+.-++ -|-++...++|.+|++||+|+........ +.. ....|| +..+.+|+.
T Consensus 86 VANvDq~liV~s~~~P~~~~~~LDRfLv~ae~~~i~~vivlnK~DL~~~~e~~~---~~~---~~~~~G--Y~~i~iS~~ 157 (351)
T PRK12289 86 IANVDQILLVFALAEPPLDPWQLSRFLVKAESTGLEIQLCLNKADLVSPTQQQQ---WQD---RLAQWG--YQPLFISVE 157 (351)
T ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHCCCHHHHHH---HHH---HHHHCC--CCEEEEECC
T ss_conf 567035999996578998877999999999987997899986577499899999---999---999779--828999678
Q ss_pred CCCCCCCCCCCH
Q ss_conf 247741122100
Q gi|254780787|r 529 NNLNLDKLLDAI 540 (884)
Q Consensus 529 ~~~~~~~~~~~~ 540 (884)
++.|++.|.+.+
T Consensus 158 ~~~gl~~L~~~L 169 (351)
T PRK12289 158 QGIGLEALLKQL 169 (351)
T ss_pred CCCCHHHHHHHH
T ss_conf 996899999987
No 352
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=96.28 E-value=0.0094 Score=36.80 Aligned_cols=75 Identities=17% Similarity=0.268 Sum_probs=54.7
Q ss_pred EEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHCCHHHHHHHCCCEEE--EEEECCEEEEECCEEE
Q ss_conf 873389870789998521784698079966998998226257664460066872797669--9972841100589899
Q gi|254780787|r 798 VFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRFKDEVSEVHAGQDCG--MAFEKYDNIQAGDMIE 873 (884)
Q Consensus 798 vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecg--i~~~~~~~~~~gD~i~ 873 (884)
.|. +-.|.|+=++|.+|+|++|..++.++.+..--...|.-+.-....+++...|+=.- -.+.+-.|+++||+|-
T Consensus 9 ~yD-~y~Gvv~~vRV~~G~lk~gd~i~~~~t~~~~~v~evG~~~P~~~~~~~L~aGeVGyii~gik~~~d~~vGDTit 85 (86)
T cd03699 9 WYD-PYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIFRPEMTPTDELSAGQVGYIIAGIKTVKDARVGDTIT 85 (86)
T ss_pred EEC-CCCCEEEEEEEECCEECCCCEEEHHHCCCCCEEEEEEECCCCCCCCCEECCCCCCEEEECCCCCCCCCCCCEEE
T ss_conf 722-78878999999799991798522334899638559887179976388494784048997342015573447875
No 353
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.26 E-value=0.0046 Score=38.88 Aligned_cols=149 Identities=21% Similarity=0.223 Sum_probs=83.5
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHH-------HHHHCC------CCCCE-ECCCEEE--------------------EEC
Q ss_conf 5303898623685044677788642-------221001------23100-0121499--------------------951
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKA-------DVAKGE------IGGIT-QHIGAYQ--------------------VAY 427 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~-------~~~~~e------~ggit-q~iga~~--------------------~~~ 427 (884)
+--++-+|+---.||||||-+.-.. .|..|- |--|- .-+-|.+ ++.
T Consensus 103 gv~~lNl~sSPGSGKTtLLe~ti~~L~~~~~~aVIeGD~~T~~DA~RI~~~Gv~avQInTG~~CHLDA~MV~~al~~l~l 182 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPRLPL 182 (290)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCC
T ss_conf 91899930699878899999999987336757999604235667999997699589954799767599999999984898
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHH
Q ss_conf 78438888516615789998666420680599998366740235777898997099415612331244332000221000
Q gi|254780787|r 428 QGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLL 507 (884)
Q Consensus 428 ~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~ 507 (884)
+...+.||.--|.=..-..-.-|. +.=|.|++..+|-..- +++=..+..--++.|||||+.........
T Consensus 183 ~~~dllfIENVGNLVCPA~FDLGE---~~kVvvlSVtEGeDKP----lKYP~mF~~ad~vlinKiDLlp~~dFD~~---- 251 (290)
T PRK10463 183 DDNGILFIENVGNLVCPASFDLGE---KHKVAVLSVTEGEDKP----LKYPHMFAAASLMLLNKVDLLPYLNFDVE---- 251 (290)
T ss_pred CCCCEEEEECCCCCCCCCCCCCCC---CEEEEEEEECCCCCCC----CCCHHHHHHCCEEEEEHHHHHHHCCCCHH----
T ss_conf 779899981278843551203677---6179999706888864----44766764257899865651220288999----
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHH
Q ss_conf 0132000123474036311002477411221000
Q gi|254780787|r 508 KHDVFVESMGGDILDVEISAKNNLNLDKLLDAIL 541 (884)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (884)
.........+-....+++|+++|+|++..+..+.
T Consensus 252 ~~~~~~~~vNp~~~v~~vSa~tGeGld~W~~WL~ 285 (290)
T PRK10463 252 KCIACAREVNPEIEIILISATSGEGMDQWLNWLE 285 (290)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 9999999869898589975688878999999999
No 354
>PRK01889 ribosome-associated GTPase; Reviewed
Probab=96.25 E-value=0.0068 Score=37.74 Aligned_cols=82 Identities=15% Similarity=0.148 Sum_probs=58.7
Q ss_pred HHCCCCEEEEEECCCCCCHHHHHHH-HHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 4206805999983667402357778-989970994156123312443320002210000132000123474036311002
Q gi|254780787|r 451 ARVTDIAVLVLAADEEIMPQAIESI-NHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKN 529 (884)
Q Consensus 451 ~~~~d~~ilvv~~~~g~~~qt~e~~-~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (884)
|+-.|.+++|.+++..+.+--+|=. -++...+++.||+|||+|+... .+....++. .....+..+.+|+.+
T Consensus 109 AANiD~v~IV~s~~~~fn~~rieRyLv~a~~~g~~pvivLnK~DL~~d-~~~~~~~~~-------~~~~g~~v~~vSa~~ 180 (353)
T PRK01889 109 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVVVLTKADLCED-VEEKIAEVE-------ALAPGVPVLAVNALD 180 (353)
T ss_pred EECCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC-HHHHHHHHH-------HHCCCCEEEEEECCC
T ss_conf 971768999952899979789999999999869967999966556679-999999999-------855997599997899
Q ss_pred CCCCCCCCCCH
Q ss_conf 47741122100
Q gi|254780787|r 530 NLNLDKLLDAI 540 (884)
Q Consensus 530 ~~~~~~~~~~~ 540 (884)
++|++.|...+
T Consensus 181 ~~gl~~L~~~l 191 (353)
T PRK01889 181 GEGVDALQAWL 191 (353)
T ss_pred CCCHHHHHHHH
T ss_conf 84789999986
No 355
>PRK00098 ribosome-associated GTPase; Reviewed
Probab=96.19 E-value=0.0079 Score=37.32 Aligned_cols=83 Identities=29% Similarity=0.367 Sum_probs=56.3
Q ss_pred HHCCCCEEEEEECCC-CCCHHHHH-HHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 420680599998366-74023577-7898997099415612331244332000221000013200012347403631100
Q gi|254780787|r 451 ARVTDIAVLVLAADE-EIMPQAIE-SINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAK 528 (884)
Q Consensus 451 ~~~~d~~ilvv~~~~-g~~~qt~e-~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (884)
|+-.|-+++|+++.+ .+.+--++ .|-++...+++.++++||+|+... .+.. ..+.+ .-+.+ ++..+.+|+.
T Consensus 78 AANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~pvivlnK~DL~~~-~~~~-~~~~~---~y~~~--gy~v~~~S~~ 150 (298)
T PRK00098 78 AANVDQAVIVFAAKEPDFSTDLLDRFLVLAEANDIKPIIVLNKIDLVDD-LEEA-RERLA---LYRAI--GYDVLELSAK 150 (298)
T ss_pred EEECCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC-HHHH-HHHHH---HHHHC--CCCEEEEECC
T ss_conf 8744789999856889899899999999999869958999642456477-9999-99999---99878--9978999689
Q ss_pred CCCCCCCCCCCH
Q ss_conf 247741122100
Q gi|254780787|r 529 NNLNLDKLLDAI 540 (884)
Q Consensus 529 ~~~~~~~~~~~~ 540 (884)
++++++.|.+.+
T Consensus 151 ~~~g~~~L~~~l 162 (298)
T PRK00098 151 EGPGLDELKPLL 162 (298)
T ss_pred CCCCHHHHHHHH
T ss_conf 998999999985
No 356
>KOG2485 consensus
Probab=96.19 E-value=0.009 Score=36.92 Aligned_cols=60 Identities=18% Similarity=0.064 Sum_probs=24.5
Q ss_pred EECCCHHHHHHHH-HHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCC
Q ss_conf 8516615789998-6664206805999983667402357778989970994156123312443
Q gi|254780787|r 435 LDTPGHAAFYEMR-ARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLG 496 (884)
Q Consensus 435 iDtPGh~~f~~~r-~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~ 496 (884)
=+-|||-+=.--+ ..-..+.|++|-|=||-=-+..--.- -.-.....|-||++||+|+.+
T Consensus 27 ~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn~~--~~~~~~~k~riiVlNK~DLad 87 (335)
T KOG2485 27 RWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRNEL--FQDFLPPKPRIIVLNKMDLAD 87 (335)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHH--HHHHCCCCCEEEEEECCCCCC
T ss_conf 6576478999999986556553799961134677655488--897337775499984010368
No 357
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=96.18 E-value=0.019 Score=34.70 Aligned_cols=111 Identities=19% Similarity=0.203 Sum_probs=61.3
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHC-CCCCCE---ECCCEE-------------EEE-------------------
Q ss_conf 30389862368504467778864222100-123100---012149-------------995-------------------
Q gi|254780787|r 383 PPVVTIMGHVDHGKTSLLDAIRKADVAKG-EIGGIT---QHIGAY-------------QVA------------------- 426 (884)
Q Consensus 383 ~pvv~v~ghvd~GKt~lld~~r~~~~~~~-e~ggit---q~iga~-------------~~~------------------- 426 (884)
|-||.++|---.||||.+-+|=..-...+ ..+=|| ..+||. .+.
T Consensus 1 P~vi~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~~ 80 (196)
T pfam00448 1 PNVILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKAK 80 (196)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 96999989999988999999999999779928999758776889999999998639817814877787899999999988
Q ss_pred CCCCEEEEEECCCHHHHHH-HHHH-----HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 1784388885166157899-9866-----6420680599998366740235777898997099415612331244
Q gi|254780787|r 427 YQGKNITFLDTPGHAAFYE-MRAR-----GARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKL 495 (884)
Q Consensus 427 ~~~~~~~~iDtPGh~~f~~-~r~r-----g~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~ 495 (884)
..+..+.||||||...+.. ++.. ...-.+-.+||+|+.-|- +..+.+.-....--+-=+.++|+|-.
T Consensus 81 ~~~~D~IlIDTaGr~~~d~~~~~el~~~~~~~~~~~~~LVl~a~~~~--~~~~~~~~f~~~~~~~~~I~TKlDet 153 (196)
T pfam00448 81 AENYDVVLVDTAGRLQNDKNLMDELKKIKRVIAPDEVLLVLDATTGQ--NALNQAKAFNEAVGITGVILTKLDGD 153 (196)
T ss_pred HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC--CHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 46899999989998747677899999998522873028998567782--13789998760047762688840578
No 358
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=96.17 E-value=0.018 Score=34.93 Aligned_cols=74 Identities=26% Similarity=0.374 Sum_probs=61.0
Q ss_pred EEEC------CCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHH-HCCHHHHHHHCCCEEEEEEECCEEEEECC
Q ss_conf 8733------8987078999852178469807996699899822625766-44600668727976699972841100589
Q gi|254780787|r 798 VFAV------TKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLK-RFKDEVSEVHAGQDCGMAFEKYDNIQAGD 870 (884)
Q Consensus 798 vF~~------~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~-~~k~~v~ev~~g~ecgi~~~~~~~~~~gD 870 (884)
||++ .-.+.++=++|.+|++++|..|.-.|.|+.+-.+++-.+. ...+++.|+..|.=||+ -|..+++.||
T Consensus 3 VFKiqanmd~~h~grlaf~RV~SG~l~~G~~v~n~rtgK~~ri~r~~~~~a~~Re~ie~A~aGDIvav--~g~~~~~tGD 80 (85)
T cd03689 3 VFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGL--VNPGNFQIGD 80 (85)
T ss_pred EEEEECCCCCCCCCEEEEEEEEEEEECCCCEEEECCCCCEEEECCHHHHHHCCCEEECEEECCCEEEE--ECCCCCEECC
T ss_conf 89985379910077189999987298689999971279678835445332277008034938989998--2799873146
Q ss_pred EEE
Q ss_conf 899
Q gi|254780787|r 871 MIE 873 (884)
Q Consensus 871 ~i~ 873 (884)
.|-
T Consensus 81 TL~ 83 (85)
T cd03689 81 TLT 83 (85)
T ss_pred CCC
T ss_conf 513
No 359
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.10 E-value=0.012 Score=36.18 Aligned_cols=81 Identities=22% Similarity=0.299 Sum_probs=56.6
Q ss_pred HHCCCCEEEEEECCCC-CCHHHHH-HHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 4206805999983667-4023577-7898997099415612331244332000221000013200012347403631100
Q gi|254780787|r 451 ARVTDIAVLVLAADEE-IMPQAIE-SINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAK 528 (884)
Q Consensus 451 ~~~~d~~ilvv~~~~g-~~~qt~e-~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (884)
++--|.+++|+++++. +.+.-++ .+-++...+++.+|++||+|+........... .... -++..+.+|+.
T Consensus 76 aANiD~v~IV~s~~~p~~~~~~idR~Lv~a~~~~i~pvivlnK~DL~~~~~~~~~~~------~~~~--~gy~v~~~S~~ 147 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELV------EALA--LGYPVLAVSAK 147 (287)
T ss_pred EECCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHCCCCHHHHHHHH------HHHC--CCCEEEEEECC
T ss_conf 972668999952689989989999999999977996899998622199489999999------9872--99849999668
Q ss_pred CCCCCCCCCCC
Q ss_conf 24774112210
Q gi|254780787|r 529 NNLNLDKLLDA 539 (884)
Q Consensus 529 ~~~~~~~~~~~ 539 (884)
++++++.|.+.
T Consensus 148 ~~~g~~~L~~~ 158 (287)
T cd01854 148 TGEGLDELREY 158 (287)
T ss_pred CCCCHHHHHHH
T ss_conf 98588999987
No 360
>PRK12289 ribosome-associated GTPase; Reviewed
Probab=96.04 E-value=0.0093 Score=36.80 Aligned_cols=60 Identities=18% Similarity=0.302 Sum_probs=37.5
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHH-HHHHHCCCCCCEECCC--------EEEEECCCCEEEEEECCCHHHHH
Q ss_conf 5530389862368504467778864-2221001231000121--------49995178438888516615789
Q gi|254780787|r 381 IRPPVVTIMGHVDHGKTSLLDAIRK-ADVAKGEIGGITQHIG--------AYQVAYQGKNITFLDTPGHAAFY 444 (884)
Q Consensus 381 ~R~pvv~v~ghvd~GKt~lld~~r~-~~~~~~e~ggitq~ig--------a~~~~~~~~~~~~iDtPGh~~f~ 444 (884)
++.=+.+++||---||+|||-+|.. .+..-| .|...+| +.-++.+.. -.++||||...|.
T Consensus 169 L~~k~tv~~G~SGVGKSSLIN~L~p~~~l~Tg---eVS~k~~rGrHTTr~~eL~~L~~G-g~iiDTPGf~~~~ 237 (351)
T PRK12289 169 LRNKITVVAGPSGVGKSSLINRLIPDVELRVG---EVSGKLQRGRHTTRHVELFELPNG-GLLADTPGFNQPD 237 (351)
T ss_pred HCCCEEEEECCCCCCHHHHHHHHCCCHHHHHH---HHCCCCCCCCCCCCEEEEEECCCC-CEEEECCCCCCCC
T ss_conf 75986999817988788988763741234566---540648998783551689994899-5899797988788
No 361
>KOG1487 consensus
Probab=95.99 E-value=0.012 Score=36.12 Aligned_cols=82 Identities=29% Similarity=0.446 Sum_probs=58.6
Q ss_pred EEEEECCCCCHHHHHHHHHH--HHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHH-HHHHHHH------HHCCCC
Q ss_conf 89862368504467778864--22210012310001214999517843888851661578-9998666------420680
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRK--ADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAF-YEMRARG------ARVTDI 456 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~--~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f-~~~r~rg------~~~~d~ 456 (884)
|...|--..||||||-.+-+ |-|+++|....|--=|.. .+.+.++.++|-||--.= --=+-|| +.-|.+
T Consensus 62 vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~--~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487 62 VGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVI--RYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred EEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCEE--ECCCCCEEEECCCCHHCCCCCCCCCCCEEEEEEECCCE
T ss_conf 5378537666243322301888765543322689706667--40456234304854001464678876078888301658
Q ss_pred EEEEEECCCCCCH
Q ss_conf 5999983667402
Q gi|254780787|r 457 AVLVLAADEEIMP 469 (884)
Q Consensus 457 ~ilvv~~~~g~~~ 469 (884)
.++|.|.+..+.-
T Consensus 140 i~~vld~~kp~~h 152 (358)
T KOG1487 140 IFIVLDVLKPLSH 152 (358)
T ss_pred EEEEEECCCCCCH
T ss_conf 9987110675217
No 362
>PRK13351 elongation factor G; Reviewed
Probab=95.98 E-value=0.032 Score=33.13 Aligned_cols=96 Identities=18% Similarity=0.314 Sum_probs=56.7
Q ss_pred CCEEEEEEHHHHHHH------------HHHHHHH----HHCCCEEEEEEEEEEEEE----EEEECCCCCCEEEEEEEEEE
Q ss_conf 985997502678999------------9999996----306940478888789997----88733898707899985217
Q gi|254780787|r 757 EIKILYYKIIYDLLD------------SIKDSMS----ELLSPEIRETFLGNAEVL----EVFAVTKLGNVAGCKVSEGK 816 (884)
Q Consensus 757 gV~I~~~~IIY~L~d------------~~~~~~~----~~l~~~~~~~~~g~a~v~----~vF~~~k~~~i~G~~V~~G~ 816 (884)
||++...|.-||-.| -+.+++. -+|+|.+.-++....+.+ .+.. .+-|.|.|.....|.
T Consensus 558 ~v~v~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~V~~~L~-~RRG~i~~~~~~~~~ 636 (687)
T PRK13351 558 DLRVTVLDGKYHSVDSSESAFVKAARKAFLEAVRKANPVLLEPIMELEITVPTEHVGDVLGDLS-QRRGKIHGTEPIGDG 636 (687)
T ss_pred EEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCEEEEEEEECHHHHHHHHHHHH-HCCCEEECCEECCCC
T ss_conf 0699998268788888767899999999999998569889778289999968899999999998-669888672745997
Q ss_pred EECCCEEEEEECCEEEEEEEEHHHHHCCHHHHHHHCCCE-EEEEEECCE
Q ss_conf 846980799669989982262576644600668727976-699972841
Q gi|254780787|r 817 VERGSGVRLIRNSTVIYEGKLKTLKRFKDEVSEVHAGQD-CGMAFEKYD 864 (884)
Q Consensus 817 i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~e-cgi~~~~~~ 864 (884)
. + ++ ...-.+.-+-.|-.+++....|+- |-+.|.+|.
T Consensus 637 ~-----~-~I-----~a~vPv~e~~g~~~~LRs~T~G~a~~~~~F~~~e 674 (687)
T PRK13351 637 K-----V-LV-----KAEAPLAELFGYATRLRSMTKGRGSFTMEFSHFD 674 (687)
T ss_pred E-----E-EE-----EEEECHHHHHCHHHHHHHCCCCCEEEEEEECCCC
T ss_conf 6-----9-99-----9998867860866874630888369999957552
No 363
>KOG0091 consensus
Probab=95.96 E-value=0.03 Score=33.30 Aligned_cols=148 Identities=20% Similarity=0.201 Sum_probs=90.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEE----E-ECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 898623685044677788642221001231000121499----9-51784388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQ----V-AYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~----~-~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
.-|+|.--.||++||.+...-..+.-. --|--...|. + |....++.+-||-|.+.|-++-..=-.-+=.++||
T Consensus 11 livigdstvgkssll~~ft~gkfaels--dptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllv 88 (213)
T KOG0091 11 LIVIGDSTVGKSSLLRYFTEGKFAELS--DPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLV 88 (213)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCC--CCCCCHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 999837752488899998337665567--985336789898734788678998730205688888789986546416999
Q ss_pred EECCCCCCHHHHHHHHHHHHCC------CCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 9836674023577789899709------9415612331244332000221000013200012347403631100247741
Q gi|254780787|r 461 LAADEEIMPQAIESINHAKAAD------VSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLD 534 (884)
Q Consensus 461 v~~~~g~~~qt~e~~~~~~~~~------~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (884)
.|+..--.-.-++.|-.--+.. +-|..+-.|.|+.. -..+..+-.+.... .. ...++.+|++.|.|++
T Consensus 89 yditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~S--qRqVt~EEaEklAa--~h--gM~FVETSak~g~NVe 162 (213)
T KOG0091 89 YDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQS--QRQVTAEEAEKLAA--SH--GMAFVETSAKNGCNVE 162 (213)
T ss_pred EECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHH--HCCCCHHHHHHHHH--HC--CCEEEEECCCCCCCHH
T ss_conf 963544667778999999998538997059998524310122--11113999999999--65--9458983145787689
Q ss_pred CCCCCHH
Q ss_conf 1221000
Q gi|254780787|r 535 KLLDAIL 541 (884)
Q Consensus 535 ~~~~~~~ 541 (884)
+.+.++.
T Consensus 163 EAF~mla 169 (213)
T KOG0091 163 EAFDMLA 169 (213)
T ss_pred HHHHHHH
T ss_conf 9999999
No 364
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=95.89 E-value=0.055 Score=31.52 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=68.5
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHH------HHHHCCCCCCEEC---CC-----EEEEECC-------------------
Q ss_conf 5303898623685044677788642------2210012310001---21-----4999517-------------------
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKA------DVAKGEIGGITQH---IG-----AYQVAYQ------------------- 428 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~------~~~~~e~ggitq~---ig-----a~~~~~~------------------- 428 (884)
.-||.-|-|---.||||||-.|.+. .|.-.|.|-|-.. |+ .++....
T Consensus 3 ~IPVtiltGFLGaGKTTlL~~lL~~~~~~riaVivNEfGev~iD~~li~~~~~~v~eL~nGCiCCs~~~dl~~~l~~l~~ 82 (317)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (317)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEECCCCEEEEECCHHHHHHHHHHH
T ss_conf 76889983088889999999997277899789998376145332988735653268844773687305228999999998
Q ss_pred -----C--CEEEEEECCCHHHHHHHHHH--------HHHCCCCEEEEEECCCCCCHHHHHHHHH-HHHCCCCEEEECCCC
Q ss_conf -----8--43888851661578999866--------6420680599998366740235777898-997099415612331
Q gi|254780787|r 429 -----G--KNITFLDTPGHAAFYEMRAR--------GARVTDIAVLVLAADEEIMPQAIESINH-AKAADVSIIVAINKI 492 (884)
Q Consensus 429 -----~--~~~~~iDtPGh~~f~~~r~r--------g~~~~d~~ilvv~~~~g~~~qt~e~~~~-~~~~~~p~iva~nk~ 492 (884)
. .-..+|-|=|=+.=..+... .....|.+|-||||.++.+. .....+ ..+...--+|.|||+
T Consensus 83 ~~~~~~~~~D~IiIEtsGlAdP~~I~~~~~~~~~l~~~~~Ld~vVtvVDa~~~~~~--l~~~~~~~~Qi~~AD~illnK~ 160 (317)
T PRK11537 83 NLDRGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQ--MNQFTIAQSQVGYADRILLTKT 160 (317)
T ss_pred HHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHEECCCEEEEEEHHHHHHH--HHCCHHHHHHHHHCCEEEEECC
T ss_conf 66435777547999625778839999998612565653203655999866555766--5303466766631868997420
Q ss_pred CCCCC
Q ss_conf 24433
Q gi|254780787|r 493 DKLGA 497 (884)
Q Consensus 493 d~~~~ 497 (884)
|+...
T Consensus 161 Dlv~~ 165 (317)
T PRK11537 161 DVAGE 165 (317)
T ss_pred CCCCH
T ss_conf 02365
No 365
>pfam03193 DUF258 Protein of unknown function, DUF258.
Probab=95.88 E-value=0.014 Score=35.69 Aligned_cols=60 Identities=23% Similarity=0.388 Sum_probs=36.7
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCC--------EEEEECCCCEEEEEECCCHHHHH
Q ss_conf 5303898623685044677788642221001231000121--------49995178438888516615789
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIG--------AYQVAYQGKNITFLDTPGHAAFY 444 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~ig--------a~~~~~~~~~~~~iDtPGh~~f~ 444 (884)
..=+++++||--.||+||+-+|.....+. -|.|.+..| +.-++.+. .-.+|||||...|.
T Consensus 34 ~~k~sv~~G~SGVGKSTLiN~L~~~~~~~--t~~iS~~~~rGkHTTt~~~l~~l~~-gg~iiDTPG~r~f~ 101 (161)
T pfam03193 34 KGKTSVLAGQSGVGKSTLLNALLPELDLR--TGEISEKLGRGRHTTTHVELFPLPG-GGLLIDTPGFRELG 101 (161)
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHH--HHHHHHHHCCCCCEEEEEEEEEECC-CCEEEECCCCCCCC
T ss_conf 79859998899988999998856344357--7753588638851121137998079-95898589876257
No 366
>PRK00098 ribosome-associated GTPase; Reviewed
Probab=95.88 E-value=0.01 Score=36.59 Aligned_cols=58 Identities=29% Similarity=0.536 Sum_probs=37.4
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHH-HHHHCCCCCCEECCC--------EEEEECCCCEEEEEECCCHHHHH
Q ss_conf 5303898623685044677788642-221001231000121--------49995178438888516615789
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKA-DVAKGEIGGITQHIG--------AYQVAYQGKNITFLDTPGHAAFY 444 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~-~~~~~e~ggitq~ig--------a~~~~~~~~~~~~iDtPGh~~f~ 444 (884)
+.=+.+++||---||+||+-+|... +..-++ |....| +.-++.++. .+|||||...|.
T Consensus 163 ~~k~sv~~G~SGVGKSSLiN~L~~~~~~~t~~---is~~~~rGrHTTt~~~l~~l~~G--~iiDTPG~r~~~ 229 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALVPELELKTGE---ISEALGRGKHTTTHVELYDLPGG--LLIDTPGFSSFG 229 (298)
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHHH---HHHHCCCCCEEEEEEEEEECCCC--EEEECCCCCCCC
T ss_conf 79869998789887888887607144456675---56651897213304689986997--598189877556
No 367
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=95.87 E-value=0.028 Score=33.52 Aligned_cols=116 Identities=17% Similarity=0.279 Sum_probs=70.5
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHH--CCC-C-CCEECCCEEE-EE-CCCCEEEEEECCCHH-------------
Q ss_conf 553038986236850446777886422210--012-3-1000121499-95-178438888516615-------------
Q gi|254780787|r 381 IRPPVVTIMGHVDHGKTSLLDAIRKADVAK--GEI-G-GITQHIGAYQ-VA-YQGKNITFLDTPGHA------------- 441 (884)
Q Consensus 381 ~R~pvv~v~ghvd~GKt~lld~~r~~~~~~--~e~-g-gitq~iga~~-~~-~~~~~~~~iDtPGh~------------- 441 (884)
-.-|-.-|||.=..||||+|-. +.... .+. | ...+++|.|. +. |-...-.+|||-|.=
T Consensus 109 y~LPWYlviG~~gsGKTt~l~~---Sgl~fPl~~~~~~~~~~g~ggt~~cdwwft~~AVliDtaGry~~Q~~~~~~d~~~ 185 (1169)
T TIGR03348 109 YDLPWYLVIGPPGSGKTTLLQN---SGLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAA 185 (1169)
T ss_pred HHCCEEEEECCCCCCHHHHHHH---CCCCCCCCCCCCHHHCCCCCCCCCCCEEEECCEEEEECCCCEECCCCCCHHHHHH
T ss_conf 4389589978999866899983---7998877410011221588998555716527879994797602688864001899
Q ss_pred --HHHH--HHHHHHHCCCCEEEEEECCCCCCHHHH---HHHHHHH----------HCCCCEEEECCCCCCCCCCC
Q ss_conf --7899--986664206805999983667402357---7789899----------70994156123312443320
Q gi|254780787|r 442 --AFYE--MRARGARVTDIAVLVLAADEEIMPQAI---ESINHAK----------AADVSIIVAINKIDKLGADP 499 (884)
Q Consensus 442 --~f~~--~r~rg~~~~d~~ilvv~~~~g~~~qt~---e~~~~~~----------~~~~p~iva~nk~d~~~~~~ 499 (884)
.|-. .+.|.-.-.+++||+||+.+=+..-.. .+...++ ....|+-|+++|+|++.++.
T Consensus 186 W~~fL~lLkk~R~r~piNGvil~is~~~Ll~~~~~~~~~~a~~lr~Rl~El~~~lg~~~PVYv~~TK~Dll~GF~ 260 (1169)
T TIGR03348 186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAGFE 260 (1169)
T ss_pred HHHHHHHHHHCCCCCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCHH
T ss_conf 999999998648989987689997899974789999999999999999999998299877599866401230699
No 368
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=95.85 E-value=0.045 Score=32.16 Aligned_cols=113 Identities=21% Similarity=0.262 Sum_probs=61.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHH-------HHHCCCCCCEE--------CCCEEEEEC---------------------
Q ss_conf 038986236850446777886422-------21001231000--------121499951---------------------
Q gi|254780787|r 384 PVVTIMGHVDHGKTSLLDAIRKAD-------VAKGEIGGITQ--------HIGAYQVAY--------------------- 427 (884)
Q Consensus 384 pvv~v~ghvd~GKt~lld~~r~~~-------~~~~e~ggitq--------~iga~~~~~--------------------- 427 (884)
||+-|.|-...||||||-.+-..+ |...|.|.+-. ....+++..
T Consensus 1 Pv~iitGFLGsGKTTll~~ll~~~~~~~~~avI~Ne~g~~~iD~~ll~~~~~~v~el~~GciCc~~~~d~~~~l~~l~~~ 80 (174)
T pfam02492 1 PVTVLTGFLGSGKTTLLEHLLRDNREGLKIAVIVNDFGETGIDAELLRETGAEIVELNNGCICCTIREDLSMVLEALLEL 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 96999348878899999999984448984799993365302079998706961899748866454333699999999855
Q ss_pred --CCCEEEEEECCCHHHHHHH-HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf --7843888851661578999-866642068059999836674023577789899709941561233124433
Q gi|254780787|r 428 --QGKNITFLDTPGHAAFYEM-RARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGA 497 (884)
Q Consensus 428 --~~~~~~~iDtPGh~~f~~~-r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~ 497 (884)
......||-|=|-..-..+ +....-..|..|-|||+....+.-.. .-.+......--+|.+||+|+...
T Consensus 81 ~~~~~d~iiIE~sGla~p~~i~~~~~~~~~~~~i~vvDa~~~~~~~~~-~~~~~~Qi~~AD~vvlNK~Dl~~~ 152 (174)
T pfam02492 81 KLPRLDLLFIETTGLACPAPVLDLRSDLGLDGVVTVVDVKNFTEGEDI-PEKAPDQIAFADLIVINKTDLAPA 152 (174)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEECHHHHHCCCC-HHHHHHHHHHCCEEEEEHHHCCCC
T ss_conf 789999999958766770777765320265459999972343300200-789999998769999846653782
No 369
>TIGR00485 EF-Tu translation elongation factor Tu; InterPro: IPR004541 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding , . EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). This entry represents EF1A (or EF-Tu) proteins found primarily in bacteria, mitochondria and chloroplasts. Eukaryotic and archaeal EF1A (IPR004539 from INTERPRO) are excluded from this entry. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors . More information about these proteins can be found at Protein of the Month: Elongation Factors .; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005622 intracellular.
Probab=95.84 E-value=0.076 Score=30.56 Aligned_cols=108 Identities=20% Similarity=0.380 Sum_probs=85.2
Q ss_pred EEEHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHH
Q ss_conf 75026789999999996306940478888789997887338987078999852178469807996699899822625766
Q gi|254780787|r 762 YYKIIYDLLDSIKDSMSELLSPEIRETFLGNAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLK 841 (884)
Q Consensus 762 ~~~IIY~L~d~~~~~~~~~l~~~~~~~~~g~a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~ 841 (884)
..+-|++|++.+-.|+. .|...-.-.--.-|-.+|.++.-|+|+-.+|..|.|+-+..+.++-=.. .....+..+.
T Consensus 185 ~~~~~~~l~~~vd~~i~---~P~r~~~~~fl~~~ed~~~i~GrGtv~tGr~e~G~~~v~~~v~~~G~~~-~~~~~vtGve 260 (394)
T TIGR00485 185 WEEKILELMEAVDEYIP---TPEREVDKPFLLPIEDVFSITGRGTVVTGRVERGVVKVGEEVEIVGLKD-TKKTTVTGVE 260 (394)
T ss_pred HHHHHHHHHHHHHHHCC---CCCHHHCCCEEEEEEEEEEEECCCEEEEEEEEECEEEECCEEEEEEEEC-CCCEEEHHHH
T ss_conf 99999999999986506---7511314411455310467504634785024304476446479987402-4540221478
Q ss_pred HCCHHHHHHHCCCEEEEEEECC--EEEEECCEEE
Q ss_conf 4460066872797669997284--1100589899
Q gi|254780787|r 842 RFKDEVSEVHAGQDCGMAFEKY--DNIQAGDMIE 873 (884)
Q Consensus 842 ~~k~~v~ev~~g~ecgi~~~~~--~~~~~gD~i~ 873 (884)
.|++.+.+...|..+|+.+.|. +|++-|-+|-
T Consensus 261 mf~k~l~~~~aG~n~G~llrG~~~~~~~rG~v~~ 294 (394)
T TIGR00485 261 MFRKELDEGEAGDNVGLLLRGIKKEEIERGMVLA 294 (394)
T ss_pred HHHHHHHCCCCCCCEEEEEECCCHHHCCCCEEEE
T ss_conf 8888741133554201011045312101563784
No 370
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=95.79 E-value=0.032 Score=33.19 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=50.8
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf 17843888851661578999866642068059999836674023577789899709941561233124433
Q gi|254780787|r 427 YQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGA 497 (884)
Q Consensus 427 ~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~ 497 (884)
+...-+.|||||-.-....+. -...+|.+|+|+-...-=.-.+.-.++++++.++|+-+++|+.|....
T Consensus 90 ~~~~D~viiD~Ppg~~~~~~~--al~~ad~~iiVttP~~~si~d~~r~i~l~~~~~~~~gvV~Nr~~~~~~ 158 (179)
T cd03110 90 AEGAELIIIDGPPGIGCPVIA--SLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLNDE 158 (179)
T ss_pred CCCCCEEEEECCCCCCHHHHH--HHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 437998998189997578999--997399499981994789999999999999829978999968878876
No 371
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=95.75 E-value=0.02 Score=34.47 Aligned_cols=53 Identities=26% Similarity=0.453 Sum_probs=35.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCC-CCCCEEC------CCEEEEECCCCEEEEEECCC
Q ss_conf 898623685044677788642221001-2310001------21499951784388885166
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGE-IGGITQH------IGAYQVAYQGKNITFLDTPG 439 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e-~ggitq~------iga~~~~~~~~~~~~iDtPG 439 (884)
|.|+|-.+.||+||+-+|.+.+..... ..++|.. +|...++... ..+++||||
T Consensus 130 vyvvG~~NvGKSTLiN~Ll~~~~~~~~~~~~~t~S~~PGTTl~~i~~~l~~-~~~l~DtPG 189 (190)
T cd01855 130 VYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPG 189 (190)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCEEEECCC-CCEEEECCC
T ss_conf 799805875467999998630234434566406679997316525897399-999995959
No 372
>PRK12740 elongation factor G; Reviewed
Probab=95.72 E-value=0.037 Score=32.73 Aligned_cols=96 Identities=19% Similarity=0.365 Sum_probs=61.8
Q ss_pred CCEEEEEEHHHHHHH------------HHHHHHHH----HCCCEEEEEEEEEEEEE----EEEECCCCCCEEEEEEEEEE
Q ss_conf 985997502678999------------99999963----06940478888789997----88733898707899985217
Q gi|254780787|r 757 EIKILYYKIIYDLLD------------SIKDSMSE----LLSPEIRETFLGNAEVL----EVFAVTKLGNVAGCKVSEGK 816 (884)
Q Consensus 757 gV~I~~~~IIY~L~d------------~~~~~~~~----~l~~~~~~~~~g~a~v~----~vF~~~k~~~i~G~~V~~G~ 816 (884)
||++...|..||-+| .+++++.. +|+|.+.-.+....+.+ .+.. .+-|.|.|..-.+|.
T Consensus 543 ~v~v~l~dg~~h~vdSs~~af~~A~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~V~~~L~-~RRG~i~~~~~~~g~ 621 (670)
T PRK12740 543 DVKVTLTDGSYHSVDSSEMAFKIAARLAFREAMPKAKPVLLEPIMRVEVSVPEEFVGDVIGDLS-GRRGQILGMEAEGGW 621 (670)
T ss_pred EEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEECHHHHHHHHHHHH-HCCCEEECEEECCCE
T ss_conf 3599998467157787378999999999999998669889768189999978899999999998-769887573742995
Q ss_pred EECCCEEEEEECCEEEEEEEEHHHHHCCHHHHHHHCCCE-EEEEEECCEE
Q ss_conf 846980799669989982262576644600668727976-6999728411
Q gi|254780787|r 817 VERGSGVRLIRNSTVIYEGKLKTLKRFKDEVSEVHAGQD-CGMAFEKYDN 865 (884)
Q Consensus 817 i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~e-cgi~~~~~~~ 865 (884)
. ++ ...-.+..+--|..+++....|+= |-+.|.+|.-
T Consensus 622 ~-------~I-----~a~vP~~e~~g~~~~LRs~T~G~a~~~~~f~~y~~ 659 (670)
T PRK12740 622 D-------VV-----RAEVPLAEMFGYATDLRSLTQGRGSFTMEFSHYEE 659 (670)
T ss_pred E-------EE-----EEEECHHHHHCHHHHHHHHCCCCEEEEEEECCCEE
T ss_conf 9-------99-----99988788616789867428884689999487326
No 373
>KOG0461 consensus
Probab=95.64 E-value=0.082 Score=30.34 Aligned_cols=83 Identities=14% Similarity=0.097 Sum_probs=47.4
Q ss_pred HCCCEEEEECCCCCHHH--HHHHHHCCCEE--EE----EEHHHHHHHHHHHHHHHHCCCEE-EEEEEEEEEEEEEEECCC
Q ss_conf 25987999638999899--99999839859--97----50267899999999963069404-788887899978873389
Q gi|254780787|r 733 ASGAVIFGFNVRASSQA--RVLAIKDEIKI--LY----YKIIYDLLDSIKDSMSELLSPEI-RETFLGNAEVLEVFAVTK 803 (884)
Q Consensus 733 ~~~a~Il~FnVkv~~~a--~~~A~~~gV~I--~~----~~IIY~L~d~~~~~~~~~l~~~~-~~~~~g~a~v~~vF~~~k 803 (884)
..++|=|||.-....-. .+|+.++==++ |. .--|-+..+|+..+..+++..+. ...++|.-..+.+- -
T Consensus 392 h~~~CRlAF~Gi~~~~l~~~~y~~~~LP~lrifkrK~k~G~veRv~~d~svI~~~lFK~etn~dlfvG~~v~lStG---e 468 (522)
T KOG0461 392 HGSGCRLAFSGIFSQILPESKYNGKNLPPLRIFKRKCKKGHVERVEKDFSVICTGLFKAETNFDLFVGFQVCLSTG---E 468 (522)
T ss_pred CCCCEEEEEEEEEHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHCCHHHHHHHHHCCCCCCCEEEEEEEEECCC---C
T ss_conf 6874278854310211764334423388116666663154055443147888766510223510353368884357---7
Q ss_pred CCCEEEEEEEEEEEE
Q ss_conf 870789998521784
Q gi|254780787|r 804 LGNVAGCKVSEGKVE 818 (884)
Q Consensus 804 ~~~i~G~~V~~G~i~ 818 (884)
.|+|-|..=..|+++
T Consensus 469 ~G~Ie~aFGqsgKf~ 483 (522)
T KOG0461 469 RGKIEGAFGQSGKFR 483 (522)
T ss_pred CCCEECCCCCCCEEE
T ss_conf 640220015765089
No 374
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=95.62 E-value=0.069 Score=30.88 Aligned_cols=107 Identities=19% Similarity=0.345 Sum_probs=79.6
Q ss_pred EEEHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHH
Q ss_conf 75026789999999996306940478888789997887338987078999852178469807996699899822625766
Q gi|254780787|r 762 YYKIIYDLLDSIKDSMSELLSPEIRETFLGNAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLK 841 (884)
Q Consensus 762 ~~~IIY~L~d~~~~~~~~~l~~~~~~~~~g~a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~ 841 (884)
..+-|.+|+|.+-.|+. .|+....-+-.+-|-.||.++.-|+++--+|..|+|+.|..+-++--. ....-.+..+.
T Consensus 185 ~~~~i~eLm~avd~yip---~Per~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~eveivG~~-~~~kttvtgve 260 (394)
T COG0050 185 WEAKIEELMDAVDSYIP---TPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEVEIVGIK-ETQKTTVTGVE 260 (394)
T ss_pred HHHHHHHHHHHHHHCCC---CCCCCCCCCCCCCCEEEEEECCCEEEEEEEEEEEEECCCCEEEEECCC-CCCEEEEEHHH
T ss_conf 67899999999985489---998655665201010068975751689878840124158779972564-55304887699
Q ss_pred HCCHHHHHHHCCCEEEEEEECC--EEEEECCEE
Q ss_conf 4460066872797669997284--110058989
Q gi|254780787|r 842 RFKDEVSEVHAGQDCGMAFEKY--DNIQAGDMI 872 (884)
Q Consensus 842 ~~k~~v~ev~~g~ecgi~~~~~--~~~~~gD~i 872 (884)
.|.+...+...|..||+.+.+- .|++-|-+|
T Consensus 261 mfrk~ld~~~aGdnvg~llRg~~r~~veRGqvL 293 (394)
T COG0050 261 MFRKLLDEGQAGDNVGVLLRGVKREDVERGQVL 293 (394)
T ss_pred HHHHHHHCCCCCCCCCEEEEECCCCCEECCEEE
T ss_conf 999887404668985268972111335312076
No 375
>PRK09601 translation-associated GTPase; Reviewed
Probab=95.62 E-value=0.038 Score=32.62 Aligned_cols=74 Identities=27% Similarity=0.395 Sum_probs=53.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHC--CCCCCEECCCEEEEECCC---------------CEEEEEECCCHH-------
Q ss_conf 89862368504467778864222100--123100012149995178---------------438888516615-------
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKG--EIGGITQHIGAYQVAYQG---------------KNITFLDTPGHA------- 441 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~--e~ggitq~iga~~~~~~~---------------~~~~~iDtPGh~------- 441 (884)
|.|+|-=+.|||||+-+|.++++..+ -...|--++|...||-.. ..+.|+|.||--
T Consensus 5 iGivGlPnvGKSTlFnalT~~~~~~~nyPf~Ti~pn~g~v~VpD~r~~~l~~~~~p~k~i~a~v~~vDiaGLv~gAs~G~ 84 (364)
T PRK09601 5 CGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDPRLDKLAEIVKPKKIVPTTIEFVDIAGLVKGASKGE 84 (364)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCC
T ss_conf 88877999988999999967998645899888788006885785458999876287650112589996577678753467
Q ss_pred ----HH-HHHHHHHHHCCCCEEEEEECC
Q ss_conf ----78-999866642068059999836
Q gi|254780787|r 442 ----AF-YEMRARGARVTDIAVLVLAAD 464 (884)
Q Consensus 442 ----~f-~~~r~rg~~~~d~~ilvv~~~ 464 (884)
.| +.+| -||..|.||++-
T Consensus 85 GLGN~FL~~iR-----~~DaiihVVr~F 107 (364)
T PRK09601 85 GLGNKFLANIR-----EVDAIVHVVRCF 107 (364)
T ss_pred CCHHHHHHHHH-----HCCEEEEEEECC
T ss_conf 74289999887-----347567750002
No 376
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=95.60 E-value=0.0095 Score=36.75 Aligned_cols=60 Identities=23% Similarity=0.399 Sum_probs=37.3
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCC--------EEEEECCCCEEEEEECCCHHHHH
Q ss_conf 5303898623685044677788642221001231000121--------49995178438888516615789
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIG--------AYQVAYQGKNITFLDTPGHAAFY 444 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~ig--------a~~~~~~~~~~~~iDtPGh~~f~ 444 (884)
+.-+++++||--.||+||+-+|.....+. -|.|....| +.-++.+. .-.+|||||...|.
T Consensus 160 ~~k~~v~~G~SGvGKSSLiN~L~~~~~~~--t~~vs~~~~rGrHTTt~~~L~~l~~-gg~iiDTPG~r~~~ 227 (287)
T cd01854 160 KGKTSVLVGQSGVGKSTLINALLPDLDLA--TGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREFG 227 (287)
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHH--HHHHHHHHCCCCEEEEEEEEEECCC-CCEEEECCCCCCCC
T ss_conf 79889998899888899998746212125--6666776089850141579999289-95898689876356
No 377
>PRK13796 GTP-binding protein YqeH; Provisional
Probab=95.44 E-value=0.028 Score=33.50 Aligned_cols=52 Identities=25% Similarity=0.445 Sum_probs=33.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCC------CCCCEECCCEEEEECCCCEEEEEECCC
Q ss_conf 3898623685044677788642221001------231000121499951784388885166
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADVAKGE------IGGITQHIGAYQVAYQGKNITFLDTPG 439 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~~~~e------~ggitq~iga~~~~~~~~~~~~iDtPG 439 (884)
=|-|+|-.+.||+||+-+|-+....... -=|-| ++...+|.+. ...++||||
T Consensus 164 dvyvVG~tNvGKSTLiN~ll~~~~~~~~~iT~S~~PGTT--L~~i~ipl~~-~~~l~DTPG 221 (367)
T PRK13796 164 DVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTT--LDKIEIPLDD-GSFLYDTPG 221 (367)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCC--CCCEEEECCC-CCEEECCCC
T ss_conf 589991575758999999998716787731344899863--0317872389-856755888
No 378
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=95.44 E-value=0.062 Score=31.17 Aligned_cols=78 Identities=19% Similarity=0.304 Sum_probs=37.3
Q ss_pred CEEEEEEEECCCCCCHHHHHHCCHHHCCCCC-CCCCCCCCCEECCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCC
Q ss_conf 4167778863776200000000000000000-256655542000146653221000012221------111234755554
Q gi|254780787|r 559 GIVVEGKLDRGRGPVVTVLVQKGTLSKGNIL-VVGDQWGKIRALFNDRGQGISKAVPSMPIE------VLGLQGMPMAGD 631 (884)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 631 (884)
+.+-.+...+..|...+-.+-.-....||++ ++|.....|-..+.+. ...++.|...+. ....+..|-+|.
T Consensus 244 g~~~~gri~kll~f~GL~R~ei~eA~AGDIvaiaG~~~~~igdTi~d~--~~~~aLp~l~iDePTlsMtf~vN~SPfAG~ 321 (603)
T COG1217 244 GTTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDINIGDTICDP--DNPEALPALSVDEPTLSMTFSVNDSPFAGK 321 (603)
T ss_pred CCEEEEEEEEEEECCCEEEEEHHHCCCCCEEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCEEEEEEECCCCCCCC
T ss_conf 947755776665505423335001255678998276435543413587--776678873368984689999568877776
Q ss_pred EEEECCC
Q ss_conf 0431242
Q gi|254780787|r 632 KFGVVDS 638 (884)
Q Consensus 632 ~~~~~~~ 638 (884)
....+-+
T Consensus 322 EGk~vTS 328 (603)
T COG1217 322 EGKFVTS 328 (603)
T ss_pred CCCEEEH
T ss_conf 7856558
No 379
>PRK12288 ribosome-associated GTPase; Reviewed
Probab=95.41 E-value=0.02 Score=34.55 Aligned_cols=85 Identities=25% Similarity=0.408 Sum_probs=45.5
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHH-HHHHHHCCCC-------CCEECCCE
Q ss_conf 541011112221012333221012410012553038986236850446777886-4222100123-------10001214
Q gi|254780787|r 351 NEFGNTVKRVLESDIEVGIFDVADSESDLDIRPPVVTIMGHVDHGKTSLLDAIR-KADVAKGEIG-------GITQHIGA 422 (884)
Q Consensus 351 ~E~g~ev~~~~~~~~~~~~~~~~~~~~~~~~R~pvv~v~ghvd~GKt~lld~~r-~~~~~~~e~g-------gitq~iga 422 (884)
...||.+..++....+ .... -... +..=+..++||---||+||+-+|. ..+..-||-. --|-+.--
T Consensus 181 ~~lGY~v~~~Sa~~~~-gl~~---L~~~--L~~ktsvf~GqSGVGKSSLiN~L~p~~~~~tgeIS~~~~~GrHTTt~~~L 254 (344)
T PRK12288 181 RNIGYRVLMVSSHTGE-GLEP---LEAA--LTGRISIFVGQSGVGKSSLINALLPEAEILVGDVSENSGLGQHTTTTARL 254 (344)
T ss_pred HHCCCEEEEEECCCCC-CHHH---HHHH--HCCCEEEEEECCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 8679739997368862-8999---9998--76785999806876788887610753342232014333886640116899
Q ss_pred EEEECCCCEEEEEECCCHHHHH
Q ss_conf 9995178438888516615789
Q gi|254780787|r 423 YQVAYQGKNITFLDTPGHAAFY 444 (884)
Q Consensus 423 ~~~~~~~~~~~~iDtPGh~~f~ 444 (884)
|.++..+ .+|||||...|.
T Consensus 255 ~~l~~gG---~lIDTPG~ref~ 273 (344)
T PRK12288 255 YHFPHGG---DLIDSPGVREFG 273 (344)
T ss_pred EECCCCC---EEEECCCCCCCC
T ss_conf 9928998---797389876557
No 380
>PRK01889 ribosome-associated GTPase; Reviewed
Probab=95.26 E-value=0.023 Score=34.16 Aligned_cols=58 Identities=22% Similarity=0.367 Sum_probs=35.2
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCC--------EEEEECCCCEEEEEECCCHHHHH
Q ss_conf 03898623685044677788642221001231000121--------49995178438888516615789
Q gi|254780787|r 384 PVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIG--------AYQVAYQGKNITFLDTPGHAAFY 444 (884)
Q Consensus 384 pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~ig--------a~~~~~~~~~~~~iDtPGh~~f~ 444 (884)
-.++++|+--.||+||+-+|-....+. -|.|-...| ..-++.+.. -.+|||||-..|.
T Consensus 195 kT~vl~G~SGVGKSTLiN~L~g~~~~~--t~~is~~~~kGRHTTt~reL~~lp~G-g~lIDTPG~Re~~ 260 (353)
T PRK01889 195 KTVALLGSSGVGKSTLVNALLGEEVQK--TGAVREDDSKGRHTTTHRELHPLPSG-GLLIDTPGMRELQ 260 (353)
T ss_pred CEEEEECCCCCCHHHHHHHHCCHHHHH--HHCCCCCCCCCEECCCEEEEEECCCC-CEEEECCCCCCCC
T ss_conf 789997788866999998756534534--41500036995001240689994899-5897379865467
No 381
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=95.23 E-value=0.078 Score=30.49 Aligned_cols=75 Identities=19% Similarity=0.210 Sum_probs=57.6
Q ss_pred EEEEC---CCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHH-HCCHHHHHHHCCCEEEEEEECCEEEEECCEE
Q ss_conf 88733---8987078999852178469807996699899822625766-4460066872797669997284110058989
Q gi|254780787|r 797 EVFAV---TKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLK-RFKDEVSEVHAGQDCGMAFEKYDNIQAGDMI 872 (884)
Q Consensus 797 ~vF~~---~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~-~~k~~v~ev~~g~ecgi~~~~~~~~~~gD~i 872 (884)
.||++ +..|.++=|+|-+|+|++|..+...+.+..-..++|-.+. ....+|.++..|+=|+| -+..|...||.|
T Consensus 4 lVFK~~~D~~~G~ls~vRVysG~l~~g~~v~n~~~~~~ekv~~l~~~~g~~~~~v~~~~AGdI~av--~gl~~~~tGDTl 81 (83)
T cd04092 4 LAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVI--TGLKQTRTGDTL 81 (83)
T ss_pred EEEEEECCCCCCCEEEEEEEECEECCCCEEEECCCCCEEEEEEEEEEECCCCEECCEECCCCEEEE--ECCCCCCCCCEE
T ss_conf 999865079844099999970789789999968899629730888975799329978969989999--787786038897
Q ss_pred E
Q ss_conf 9
Q gi|254780787|r 873 E 873 (884)
Q Consensus 873 ~ 873 (884)
-
T Consensus 82 t 82 (83)
T cd04092 82 V 82 (83)
T ss_pred C
T ss_conf 5
No 382
>PRK05433 GTP-binding protein LepA; Provisional
Probab=95.22 E-value=0.039 Score=32.58 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=16.5
Q ss_pred EEEHHHHHHHHHHHHHHHHCC
Q ss_conf 750267899999999963069
Q gi|254780787|r 762 YYKIIYDLLDSIKDSMSELLS 782 (884)
Q Consensus 762 ~~~IIY~L~d~~~~~~~~~l~ 782 (884)
.++|||+.||.+|..-.|+=+
T Consensus 451 L~Eii~DFfDkLKS~s~GYAS 471 (601)
T PRK05433 451 LAEIVFDFFDRLKSVSRGYAS 471 (601)
T ss_pred HHHHHHHHHHHHHCCCCCCEE
T ss_conf 899988787875411655157
No 383
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.14 E-value=0.14 Score=28.71 Aligned_cols=144 Identities=19% Similarity=0.222 Sum_probs=79.0
Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHH-HC--CCCCCE---ECCCEEE----------EE----------------C
Q ss_conf 255303898623685044677788642221-00--123100---0121499----------95----------------1
Q gi|254780787|r 380 DIRPPVVTIMGHVDHGKTSLLDAIRKADVA-KG--EIGGIT---QHIGAYQ----------VA----------------Y 427 (884)
Q Consensus 380 ~~R~pvv~v~ghvd~GKt~lld~~r~~~~~-~~--e~ggit---q~iga~~----------~~----------------~ 427 (884)
..+.-|++++|----||||.+-+|=-..+. .| -.|=|| ..|||.+ +| .
T Consensus 173 ~~~ggV~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~IlgvPv~vv~~~~eL~~aL~~l 252 (404)
T PRK06995 173 MERGGVFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALAEL 252 (404)
T ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHH
T ss_conf 11475589866888763758999999999983898379997687547899999999987595599959999999999970
Q ss_pred CCCEEEEEECCCHHHHHHHHHHH------HHCCCCEEEEEECCCCCCHHHH-HHHHHHHHCCCCEEEECCCCCCCCCCCC
Q ss_conf 78438888516615789998666------4206805999983667402357-7789899709941561233124433200
Q gi|254780787|r 428 QGKNITFLDTPGHAAFYEMRARG------ARVTDIAVLVLAADEEIMPQAI-ESINHAKAADVSIIVAINKIDKLGADPQ 500 (884)
Q Consensus 428 ~~~~~~~iDtPGh~~f~~~r~rg------~~~~d~~ilvv~~~~g~~~qt~-e~~~~~~~~~~p~iva~nk~d~~~~~~~ 500 (884)
..+.+.||||+|...+..+...- ..-..-.+||+++.- .+++. +.+......+ +-=+.++|+|-......
T Consensus 253 ~~~dlILIDTaGrs~rD~~~~e~l~~l~~~~~~~~~~LVLsat~--~~~dl~~i~~~f~~~~-~~~~I~TKLDEt~~~G~ 329 (404)
T PRK06995 253 RNKHIVLIDTVGMSQRDRMVSEQIAMLHGAGAPVQRLLLLNATS--HGDTLNEVVQAYRGPG-LAGCILTKLDEAASLGG 329 (404)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC--CHHHHHHHHHHHCCCC-CCEEEEECCCCCCCHHH
T ss_conf 89999998099989768889999999973578852899977989--9999999999844699-98399830406797239
Q ss_pred HHHHHHHCCCCCCCCCCCCCEEEEEEEC-CCCCCCCCCCC
Q ss_conf 0221000013200012347403631100-24774112210
Q gi|254780787|r 501 KVRMSLLKHDVFVESMGGDILDVEISAK-NNLNLDKLLDA 539 (884)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 539 (884)
..+..... ..|+|.+ +|+++++-+..
T Consensus 330 iln~~~~~-------------~lPlsy~T~GQ~VPeDi~~ 356 (404)
T PRK06995 330 ALDTVIRH-------------KLPLHYVSNGQRVPEDLHV 356 (404)
T ss_pred HHHHHHHH-------------CCCEEEECCCCCCCCCHHC
T ss_conf 99999997-------------8985998189958421210
No 384
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.13 E-value=0.069 Score=30.85 Aligned_cols=142 Identities=19% Similarity=0.282 Sum_probs=80.4
Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHC---CCCCCE---ECCCEEE----------EE----------------C
Q ss_conf 25530389862368504467778864222100---123100---0121499----------95----------------1
Q gi|254780787|r 380 DIRPPVVTIMGHVDHGKTSLLDAIRKADVAKG---EIGGIT---QHIGAYQ----------VA----------------Y 427 (884)
Q Consensus 380 ~~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~---e~ggit---q~iga~~----------~~----------------~ 427 (884)
..|--|+.++|---.||||-+-+|=--.+... -.+-|| ..|||++ +| .
T Consensus 345 ~~~gGv~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRiga~eQL~~y~~ilgvpv~~~~~~~~l~~~l~~l 424 (557)
T PRK12727 345 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL 424 (557)
T ss_pred HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHH
T ss_conf 54076478743777673117999999999973998189997266408799999999998397579828999999999983
Q ss_pred CCCEEEEEECCCHHH--------HHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
Q ss_conf 784388885166157--------899986664206805999983667402357778989970994156123312443320
Q gi|254780787|r 428 QGKNITFLDTPGHAA--------FYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADP 499 (884)
Q Consensus 428 ~~~~~~~iDtPGh~~--------f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~ 499 (884)
..+.+.+|||.|... |..+. .+.. ---+||+++.. +.++...+.......-+--+.++|+|-.....
T Consensus 425 ~~~~lvliDTaG~~~rd~~~~~~~~~l~-~~~~--~~~~Lvl~a~~--~~~~l~~~~~~~~~~~~~~~i~TKlDE~~~~G 499 (557)
T PRK12727 425 RDYKLVLIDTAGMGQRDRALAAQLNWLR-AARQ--VTSLLVLPANA--HFSDLDEVVRRFAHAKPQGVVLTKLDETGRFG 499 (557)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHH-CCCC--CCEEEEEECCC--CHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
T ss_conf 6999899949998846999999999875-1477--63599996889--98999999998537998748996143678703
Q ss_pred CHHHHHHHCCCCCCCCCCCCCEEEEEEE-CCCCCCCCCCCC
Q ss_conf 0022100001320001234740363110-024774112210
Q gi|254780787|r 500 QKVRMSLLKHDVFVESMGGDILDVEISA-KNNLNLDKLLDA 539 (884)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 539 (884)
... +.+..+ .+|++. ..|+.+.+-+..
T Consensus 500 ~~l-~~~~~~------------~lp~~y~t~GQ~VPeDi~~ 527 (557)
T PRK12727 500 SAL-SVVVDH------------QMPITWVTDGQRVPDDLHR 527 (557)
T ss_pred HHH-HHHHHH------------CCCEEEECCCCCCCCCHHH
T ss_conf 999-999996------------8982897589828523643
No 385
>TIGR01393 lepA GTP-binding protein LepA; InterPro: IPR006297 LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function of the proteins in this family are unknown. ; GO: 0005525 GTP binding.
Probab=95.11 E-value=0.15 Score=28.53 Aligned_cols=101 Identities=18% Similarity=0.329 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEE-EEEEEEEE-EEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHCC-
Q ss_conf 899999999963069404788-88789997-887338987078999852178469807996699899822625766446-
Q gi|254780787|r 768 DLLDSIKDSMSELLSPEIRET-FLGNAEVL-EVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRFK- 844 (884)
Q Consensus 768 ~L~d~~~~~~~~~l~~~~~~~-~~g~a~v~-~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k- 844 (884)
+|+|.| ++.--.|.--.. -.=+|-|= ..|..=+ |.|+=++|.+|+|+.|-.+++|-.|..=.--.|.-..=.-
T Consensus 171 e~LEaI---v~~vPpP~Gd~~DapLkALIFDS~YD~Yr-GVv~~vRv~~G~ik~gD~I~~Mstgk~y~V~evG~~~P~~~ 246 (598)
T TIGR01393 171 EILEAI---VKRVPPPKGDPDDAPLKALIFDSHYDNYR-GVVVLVRVFEGTIKKGDKIRFMSTGKEYEVDEVGVFTPKLE 246 (598)
T ss_pred HHHHHH---HHCCCCCCCCCCCCCCEEEEEEEEECCCC-EEEEEEEEEECEECCCCEEEEEECCCEEEEEEEEEECCCCC
T ss_conf 998897---10181001138886632278843543865-08999999526864698899953487666755003434520
Q ss_pred HHHHHHHCCCEEEEE---EECCEEEEECCEEE
Q ss_conf 006687279766999---72841100589899
Q gi|254780787|r 845 DEVSEVHAGQDCGMA---FEKYDNIQAGDMIE 873 (884)
Q Consensus 845 ~~v~ev~~g~ecgi~---~~~~~~~~~gD~i~ 873 (884)
....+...| |+|-. |.+-.|++|||+|=
T Consensus 247 ~~~~~L~aG-eVGy~~AgIK~v~D~~VGDTiT 277 (598)
T TIGR01393 247 VKTQELSAG-EVGYIIAGIKDVSDVKVGDTIT 277 (598)
T ss_pred CCCCCEECC-CEEEEEEEEEECCCEECCCEEE
T ss_conf 146620016-3059998653104112054452
No 386
>PRK12312 infB translation initiation factor IF-2; Provisional
Probab=95.07 E-value=0.032 Score=33.18 Aligned_cols=30 Identities=23% Similarity=0.185 Sum_probs=17.1
Q ss_pred EEEEECCCCCCCHHHHHHHHHCCCEEEEECC
Q ss_conf 5788512685757788764325987999638
Q gi|254780787|r 713 LSIVHSSVGAINETDVSLAKASGAVIFGFNV 743 (884)
Q Consensus 713 i~v~~~~VG~v~~~DV~~A~~~~a~Il~FnV 743 (884)
--|+.=+|.+-..- -.+|...+--|..|||
T Consensus 464 AiIigFNV~~~~~a-~~~A~~~gV~Ir~y~I 493 (610)
T PRK12312 464 SIIIGFNVKPSAII-KKLAESQGIKIRSHNI 493 (610)
T ss_pred CCEEEECCCCCHHH-HHHHHHCCCCEEEECH
T ss_conf 91899737688779-9987744862698422
No 387
>TIGR00475 selB selenocysteine-specific translation elongation factor; InterPro: IPR004535 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation . This family describes the elongation factor SelB, a close homologue of EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This family should not include an equivalent protein for eukaryotes. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm.
Probab=95.05 E-value=0.031 Score=33.21 Aligned_cols=104 Identities=17% Similarity=0.253 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHCCCEEEE---EEEEEEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHCC
Q ss_conf 89999999996306940478---888789997887338987078999852178469807996699899822625766446
Q gi|254780787|r 768 DLLDSIKDSMSELLSPEIRE---TFLGNAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRFK 844 (884)
Q Consensus 768 ~L~d~~~~~~~~~l~~~~~~---~~~g~a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k 844 (884)
.=|++++.++..|++..-.. .-.=+.-|=.+|.+...|+|+--...+|.++-|-.++|.==|..+ +|.+|+-++
T Consensus 158 ~Gi~~Lk~~L~~L~e~~~~~r~~~~~lr~~iD~aF~vKG~GtVvtGt~f~G~VkvGD~~~~~pig~~~---rvk~~~~~~ 234 (627)
T TIGR00475 158 QGIEELKKELKNLLESLDIKRDKQKPLRLAIDRAFKVKGAGTVVTGTAFSGEVKVGDKLVLEPIGKEV---RVKAIQAQN 234 (627)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEEEEEEEEEEEEECCEEEEEECCCEE---EEEEEECCC
T ss_conf 77789999998657776554201566651032155870302468755784168988889981058367---886402058
Q ss_pred HHHHHHHCCCEEEEEEE-CC--EEEEECCEEEE
Q ss_conf 00668727976699972-84--11005898999
Q gi|254780787|r 845 DEVSEVHAGQDCGMAFE-KY--DNIQAGDMIEC 874 (884)
Q Consensus 845 ~~v~ev~~g~ecgi~~~-~~--~~~~~gD~i~~ 874 (884)
.+|+.+-.|+-.|+.|. +. ..++=||-+-.
T Consensus 235 ~~~~~A~AG~RiALnL~~~vd~~~~~RGDWll~ 267 (627)
T TIGR00475 235 QDVEKAVAGQRIALNLAADVDKEKLKRGDWLLI 267 (627)
T ss_pred CCCCEEECHHHHHHHCCCCCCCCCCCCCCEEEC
T ss_conf 852210020136541234576122566512202
No 388
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=95.02 E-value=0.11 Score=29.45 Aligned_cols=76 Identities=22% Similarity=0.382 Sum_probs=53.7
Q ss_pred EEEEEECC-CCCCEEEEEEEEEEEECCCEEEEEECC------EEEEEEEEHH---HH-HCCHHHHHHHCCCEEEEEEECC
Q ss_conf 97887338-987078999852178469807996699------8998226257---66-4460066872797669997284
Q gi|254780787|r 795 VLEVFAVT-KLGNVAGCKVSEGKVERGSGVRLIRNS------TVIYEGKLKT---LK-RFKDEVSEVHAGQDCGMAFEKY 863 (884)
Q Consensus 795 v~~vF~~~-k~~~i~G~~V~~G~i~~~~~~~v~r~~------~~i~~g~i~s---l~-~~k~~v~ev~~g~ecgi~~~~~ 863 (884)
|.+.+..+ ..+.||=|+|-+|+|++|..|+|+..+ .-+...+|.+ +. +...+|.+|..|.=|||. |.
T Consensus 5 v~k~~~~~d~~~fia~gRV~SGtl~~G~~V~vlgp~y~~~~~~~~~~~~I~~l~~~~G~~~~~v~~~~AGnIv~i~--Gl 82 (93)
T cd03700 5 VTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV--GL 82 (93)
T ss_pred EEEEEECCCCCEEEEEEEEEECEEECCCEEEEECCCCCCCCCCEEEEEEEEEEEEEECCCEEECCEECCCCEEEEE--CC
T ss_conf 9971656999789999999866680899999978878888776133889869999956889990988899999997--76
Q ss_pred EEEEECCEE
Q ss_conf 110058989
Q gi|254780787|r 864 DNIQAGDMI 872 (884)
Q Consensus 864 ~~~~~gD~i 872 (884)
++++.|+++
T Consensus 83 d~~~~g~~~ 91 (93)
T cd03700 83 DQLKSGTTA 91 (93)
T ss_pred CCCEEEEEE
T ss_conf 544377598
No 389
>CHL00189 infB translation initiation factor 2; Provisional
Probab=94.96 E-value=0.038 Score=32.65 Aligned_cols=31 Identities=13% Similarity=0.040 Sum_probs=17.7
Q ss_pred EEEEEECCCCCCCHHHHHHHHHCCCEEEEECC
Q ss_conf 65788512685757788764325987999638
Q gi|254780787|r 712 CLSIVHSSVGAINETDVSLAKASGAVIFGFNV 743 (884)
Q Consensus 712 ~i~v~~~~VG~v~~~DV~~A~~~~a~Il~FnV 743 (884)
..-|+.=+|.+-. .--.+|...+--|..|||
T Consensus 622 ~AiIIGFNVr~~~-~ak~~Ae~~gV~Ir~y~I 652 (770)
T CHL00189 622 NALIIAFNTNLAP-GAKKAARKLNVDIREYDV 652 (770)
T ss_pred CCEEEEECCCCCH-HHHHHHHHCCCEEEEECC
T ss_conf 9889996279897-899999975974899160
No 390
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.95 E-value=0.027 Score=33.61 Aligned_cols=60 Identities=28% Similarity=0.510 Sum_probs=39.4
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 3038986236850446777886422210012310001214999517843888851661578999866642
Q gi|254780787|r 383 PPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGAR 452 (884)
Q Consensus 383 ~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~ 452 (884)
..|++|.|.=+.|||||+-+|-.--...| . .+| .+......+- +|+||-.+|. +|..||.
T Consensus 1 mkii~ivG~snSGKTTLi~kli~~l~~~G----~--~V~--~iKH~~H~f~-~D~~GkDS~r-~~~AGA~ 60 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALSARG----L--RVA--VIKHDHHDFD-IDTPGKDSYR-HREAGAE 60 (159)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHCC----C--EEE--EEEECCCCCC-CCCCCCHHHH-HHHCCCC
T ss_conf 92999996799999999999999999779----8--598--9973476777-7789844177-6752973
No 391
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=94.87 E-value=0.093 Score=29.99 Aligned_cols=63 Identities=16% Similarity=0.150 Sum_probs=44.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEECCCCCCC
Q ss_conf 388885166157899986664206805999983667402357778989970994-15612331244
Q gi|254780787|r 431 NITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVS-IIVAINKIDKL 495 (884)
Q Consensus 431 ~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p-~iva~nk~d~~ 495 (884)
-+.+||||.-- +.+-..-...+|.+|+|+..+---.--+...+.++++.+.+ +-+.+|+.+.-
T Consensus 64 D~viiD~ppg~--~~~~~~~l~~ad~vlvv~~p~~~sl~~~~~~~~~~~~~~~~~~~vv~Nr~~~~ 127 (179)
T cd02036 64 DYILIDSPAGI--ERGFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCC--CHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 99999799998--88999999846812563788588999999999999825996469998454676
No 392
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=94.85 E-value=0.045 Score=32.16 Aligned_cols=53 Identities=25% Similarity=0.411 Sum_probs=33.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEC------CCEEEEECCCCEEEEEECCCH
Q ss_conf 38986236850446777886422210012310001------214999517843888851661
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQH------IGAYQVAYQGKNITFLDTPGH 440 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~------iga~~~~~~~~~~~~iDtPGh 440 (884)
=|-|+|..+.||+||+-+|-+.+.... ..||-. ++...++.+ ...+++||||-
T Consensus 156 dvyvvG~tNvGKSTliN~Ll~~~~~~~--~~~T~S~~PGTTL~~i~i~l~-~~~~i~DTPGi 214 (360)
T TIGR03597 156 DVYVVGVTNVGKSSLINKLLKQNNGDK--DVITTSPFPGTTLDLIEIPLD-DGHSLYDTPGI 214 (360)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCC--CCEEECCCCCCCCCCEEEECC-CCCEEECCCCC
T ss_conf 589991686658999999987616777--723645899853330787538-99557457765
No 393
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=94.82 E-value=0.16 Score=28.34 Aligned_cols=93 Identities=17% Similarity=0.284 Sum_probs=57.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCC-CCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 38986236850446777886422210012-31000121499951784388885166157899986664206805999983
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADVAKGEI-GGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~~~~e~-ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
-|-|||---.||++.+-.|-+-.++.--| ..-|-.+--..-...+.+++||||||--.= +.
T Consensus 33 tILvlGKtGVGKSsTINSifgE~~~~~~aF~~~t~r~~~v~~tv~G~kl~iIDTPGL~~~------------------~~ 94 (249)
T cd01853 33 TILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLES------------------VM 94 (249)
T ss_pred EEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCC------------------CC
T ss_conf 999980687645776776508541344776778865089987533448998608987766------------------54
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEE-EECCCCCCC
Q ss_conf 66740235777898997099415-612331244
Q gi|254780787|r 464 DEEIMPQAIESINHAKAADVSII-VAINKIDKL 495 (884)
Q Consensus 464 ~~g~~~qt~e~~~~~~~~~~p~i-va~nk~d~~ 495 (884)
+..+-.+-..+|+..-+...|-| ..+..+|..
T Consensus 95 ~~~~N~k~l~~iKr~l~~~~~DvvLYvDRLD~~ 127 (249)
T cd01853 95 DQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMY 127 (249)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 221309999999999628999789998457662
No 394
>KOG0082 consensus
Probab=94.80 E-value=0.21 Score=27.61 Aligned_cols=75 Identities=17% Similarity=0.229 Sum_probs=58.2
Q ss_pred CEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC--------CCCCCHHHHHHHHHHHH-------CCCCE
Q ss_conf 1499951784388885166157899986664206805999983--------66740235777898997-------09941
Q gi|254780787|r 421 GAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA--------DEEIMPQAIESINHAKA-------ADVSI 485 (884)
Q Consensus 421 ga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~--------~~g~~~qt~e~~~~~~~-------~~~p~ 485 (884)
--+.|..++..+.++|.+|+-+=-.-..-.=--.+.+|.+||. .|.....-.||+.|... .+++|
T Consensus 186 ~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsi 265 (354)
T KOG0082 186 VEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSI 265 (354)
T ss_pred EEEEEEECCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf 58999867984489707976887633777516898799997643330010145410489999999999964803224727
Q ss_pred EEECCCCCCC
Q ss_conf 5612331244
Q gi|254780787|r 486 IVAINKIDKL 495 (884)
Q Consensus 486 iva~nk~d~~ 495 (884)
|..|||+|+.
T Consensus 266 iLFLNK~DLF 275 (354)
T KOG0082 266 ILFLNKKDLF 275 (354)
T ss_pred EEEEECHHHH
T ss_conf 9996238878
No 395
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=94.78 E-value=0.1 Score=29.67 Aligned_cols=26 Identities=38% Similarity=0.509 Sum_probs=20.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 38986236850446777886422210
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADVAK 410 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~~~ 410 (884)
|+.|-|-+-.|||||+++|-..-...
T Consensus 1 viGitG~pGaGKStLi~~l~~~~~~~ 26 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRAR 26 (148)
T ss_pred CEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf 97625899787899999999999978
No 396
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=94.75 E-value=0.068 Score=30.89 Aligned_cols=99 Identities=23% Similarity=0.349 Sum_probs=61.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHC--CCCCCEECCCEEEEECCC---------------CEEEEEECCCHH-------
Q ss_conf 89862368504467778864222100--123100012149995178---------------438888516615-------
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKG--EIGGITQHIGAYQVAYQG---------------KNITFLDTPGHA------- 441 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~--e~ggitq~iga~~~~~~~---------------~~~~~iDtPGh~------- 441 (884)
|.|+|-=+.|||||+-+|.++++... -...|--++|...||-.. ..+.|+|.||--
T Consensus 1 ~GivGlpnvGKstlFnalT~~~~~~~nypf~ti~pn~g~v~VpD~Rl~~L~~~~~p~k~i~a~vefvDIaGLvkgAs~Ge 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CCEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCC
T ss_conf 95647899988999999977998745899777268058996775658899873177651235789985465567752367
Q ss_pred ----HH-HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE-CCCCCCCCCCCCHHHHHHH
Q ss_conf ----78-999866642068059999836674023577789899709941561-2331244332000221000
Q gi|254780787|r 442 ----AF-YEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVA-INKIDKLGADPQKVRMSLL 507 (884)
Q Consensus 442 ----~f-~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva-~nk~d~~~~~~~~~~~~~~ 507 (884)
.| +++|. ||..+.||.+ +.-+-|+- -+++| |-.+.+.+..+|.
T Consensus 81 GLGN~FL~~Ir~-----vDai~hVVR~-----------------F~d~~I~Hv~g~vD-P~rDieiI~~ELi 129 (274)
T cd01900 81 GLGNKFLSHIRE-----VDAIAHVVRC-----------------FEDDDITHVEGSVD-PVRDIEIINTELI 129 (274)
T ss_pred CCCHHHHHHHHH-----CCEEEEEHHH-----------------CCCCCCCCCCCCCC-HHHHHHHHHHHHH
T ss_conf 650899999873-----4634653211-----------------15773017899979-7999999999999
No 397
>COG1161 Predicted GTPases [General function prediction only]
Probab=94.74 E-value=0.067 Score=30.94 Aligned_cols=99 Identities=21% Similarity=0.162 Sum_probs=64.9
Q ss_pred EEEECCCHH-HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf 888516615-7899986664206805999983667402357778989970994156123312443320002210000132
Q gi|254780787|r 433 TFLDTPGHA-AFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDV 511 (884)
Q Consensus 433 ~~iDtPGh~-~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~ 511 (884)
.+-+-|||- .|......-....|+++.||||-+-......+.-...+.... |+++||+|+...+..........
T Consensus 13 ~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~k~~--i~vlNK~DL~~~~~~~~W~~~~~--- 87 (322)
T COG1161 13 KIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKEKPK--LLVLNKADLAPKEVTKKWKKYFK--- 87 (322)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCC--EEEEEHHHCCCHHHHHHHHHHHH---
T ss_conf 0255677519999999875366765899743126888887306788557883--59985132489999999999998---
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCCCH
Q ss_conf 00012347403631100247741122100
Q gi|254780787|r 512 FVESMGGDILDVEISAKNNLNLDKLLDAI 540 (884)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (884)
... ....+.+++..+.+...+..++
T Consensus 88 ~~~----~~~~~~v~~~~~~~~~~i~~~~ 112 (322)
T COG1161 88 KEE----GIKPIFVSAKSRQGGKKIRKAL 112 (322)
T ss_pred HCC----CCCCEEEECCCCCCCCCCHHHH
T ss_conf 647----9865576433467765425888
No 398
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=94.59 E-value=0.16 Score=28.41 Aligned_cols=83 Identities=20% Similarity=0.182 Sum_probs=56.9
Q ss_pred CCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECC--------CCCCHHHHHHHHHHHH-----
Q ss_conf 310001214999517843888851661578999866642068059999836--------6740235777898997-----
Q gi|254780787|r 414 GGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAAD--------EEIMPQAIESINHAKA----- 480 (884)
Q Consensus 414 ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~--------~g~~~qt~e~~~~~~~----- 480 (884)
..-|..|.-+.+..++..+.++|+.|--+=-.-=...-.-.+.+|.||+.. +.....-.||+.+.+.
T Consensus 145 R~~TtGI~e~~F~~~~~~~~~~DVGGQrseRkKWi~~Fe~V~aiiFvvsLs~yDq~l~Ed~~~Nrl~eSl~LF~~i~n~~ 224 (317)
T cd00066 145 RVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSR 224 (317)
T ss_pred HCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCH
T ss_conf 35678831699997776799851688844343468884677669988523532335556645178999999999997487
Q ss_pred --CCCCEEEECCCCCCCC
Q ss_conf --0994156123312443
Q gi|254780787|r 481 --ADVSIIVAINKIDKLG 496 (884)
Q Consensus 481 --~~~p~iva~nk~d~~~ 496 (884)
.++|+|+.+||+|...
T Consensus 225 ~f~~~~iiLflNK~Dlf~ 242 (317)
T cd00066 225 WFANTSIILFLNKKDLFE 242 (317)
T ss_pred HHCCCCEEEEEECHHHHH
T ss_conf 455798899985769999
No 399
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=94.57 E-value=0.23 Score=27.22 Aligned_cols=82 Identities=21% Similarity=0.182 Sum_probs=54.5
Q ss_pred CCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC--------CCCCCHHHHHHHHHHHH------
Q ss_conf 1000121499951784388885166157899986664206805999983--------66740235777898997------
Q gi|254780787|r 415 GITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA--------DEEIMPQAIESINHAKA------ 480 (884)
Q Consensus 415 gitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~--------~~g~~~qt~e~~~~~~~------ 480 (884)
.-|-.|--+.|..++..+.|+|.=|..+=-.-=...-.-.+.+|.||+. .|.......||+.+.+.
T Consensus 169 ~~TtGI~e~~f~~~~~~~~~~DVGGQRseRrKWi~~Fd~V~aiiFv~slS~yDq~l~Ed~~~Nrm~eSl~LF~~I~n~~~ 248 (342)
T smart00275 169 VPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRW 248 (342)
T ss_pred CCCCCCEEEEEEECCEEEEEECCCCCCCHHHHHHHHHCCCCEEEEEEEHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHH
T ss_conf 65578416888768846999607987402333777616776899995122315456577766089999999999964863
Q ss_pred -CCCCEEEECCCCCCCC
Q ss_conf -0994156123312443
Q gi|254780787|r 481 -ADVSIIVAINKIDKLG 496 (884)
Q Consensus 481 -~~~p~iva~nk~d~~~ 496 (884)
.++|+|+.+||+|...
T Consensus 249 f~~t~iiLfLNK~Dlf~ 265 (342)
T smart00275 249 FANTSIILFLNKIDLFE 265 (342)
T ss_pred HCCCCEEEEEECHHHHH
T ss_conf 45788799975589999
No 400
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.52 E-value=0.27 Score=26.77 Aligned_cols=114 Identities=19% Similarity=0.259 Sum_probs=64.3
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC-----CCCCE---ECCCEEE----------EE----------------
Q ss_conf 55303898623685044677788642221001-----23100---0121499----------95----------------
Q gi|254780787|r 381 IRPPVVTIMGHVDHGKTSLLDAIRKADVAKGE-----IGGIT---QHIGAYQ----------VA---------------- 426 (884)
Q Consensus 381 ~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e-----~ggit---q~iga~~----------~~---------------- 426 (884)
..+-|++..|---.||||-+-+|=......+. .|=|| ..|||.+ +|
T Consensus 172 ~k~~vi~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~il~vp~~v~~~~~dl~~~l~~ 251 (388)
T PRK12723 172 LKKRIFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHH
T ss_conf 57628999899887578799999999998626767737999807875889999999999978806985788999999997
Q ss_pred CCCCEEEEEECCCHHHHH-----HHHHHHHHC-CCC-EEEEEECCCCCCHHHHHHH-HHHHHCCCCEEEECCCCCCCCC
Q ss_conf 178438888516615789-----998666420-680-5999983667402357778-9899709941561233124433
Q gi|254780787|r 427 YQGKNITFLDTPGHAAFY-----EMRARGARV-TDI-AVLVLAADEEIMPQAIESI-NHAKAADVSIIVAINKIDKLGA 497 (884)
Q Consensus 427 ~~~~~~~~iDtPGh~~f~-----~~r~rg~~~-~d~-~ilvv~~~~g~~~qt~e~~-~~~~~~~~p~iva~nk~d~~~~ 497 (884)
.....+.||||+|..... .|..--..+ .|+ .+||+++.-+-. ....+ ......++ -=+.++|+|-...
T Consensus 252 ~~~~D~IlIDTAGrs~~d~~~~~el~~~~~~~~~~~~~~Lvlsat~~~~--d~~~i~~~f~~~~~-~~~I~TKlDEt~~ 327 (388)
T PRK12723 252 SKDFDLVLIDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTS--DIKEIFHQFSPFSY-KTVIFTKLDETTC 327 (388)
T ss_pred HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHH--HHHHHHHHHCCCCC-CEEEEEECCCCCC
T ss_conf 2499999995899885689999999999974189845999987989999--99999998427999-8499983227898
No 401
>TIGR00483 EF-1_alpha translation elongation factor EF-1, subunit alpha; InterPro: IPR004539 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding , . EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). This entry represents EF1A proteins found primarily in eukaryotic (eEF1A) and archaeal (aEF1A) organisms, these proteins being more closely related to one another than to EF1A (or EF-Tu) found in bacteria (IPR004541 from INTERPRO). More information about these proteins can be found at Protein of the Month: Elongation Factors . ; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005737 cytoplasm.
Probab=94.51 E-value=0.025 Score=33.93 Aligned_cols=103 Identities=19% Similarity=0.383 Sum_probs=81.3
Q ss_pred EEEEEHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHH
Q ss_conf 99750267899999999963069404788887899978873389870789998521784698079966998998226257
Q gi|254780787|r 760 ILYYKIIYDLLDSIKDSMSELLSPEIRETFLGNAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKT 839 (884)
Q Consensus 760 I~~~~IIY~L~d~~~~~~~~~l~~~~~~~~~g~a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~s 839 (884)
+....-+-+.||.+ -.|++--..+=+.=++-|+.++..|+|==-+|..|.|+.|..|---=-|. .|.|+|
T Consensus 221 vv~G~TL~EA~D~~-------~~P~kp~d~PLRiPiQDVY~I~GvGTVPVGRVEtGvl~~G~~V~F~PAGV---sgEVKS 290 (445)
T TIGR00483 221 VVKGKTLLEALDAL-------EPPEKPVDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGV---SGEVKS 290 (445)
T ss_pred EECCCHHHHHHHHH-------CCCCCCCCCCCCCCCCCEEEECCEEECCCCCEECCEEECCCEEEECCCCC---CCCEEE
T ss_conf 22184589887310-------47864346773055300357533662234602024264488789637884---312136
Q ss_pred HHHCCHHHHHHHCCCEEEEEEECC--EEEEECCEE
Q ss_conf 664460066872797669997284--110058989
Q gi|254780787|r 840 LKRFKDEVSEVHAGQDCGMAFEKY--DNIQAGDMI 872 (884)
Q Consensus 840 l~~~k~~v~ev~~g~ecgi~~~~~--~~~~~gD~i 872 (884)
+..++|.+.++.=|..+|-.+.|. +||+=||+-
T Consensus 291 iEMHHE~i~~a~PGDNiGFNVrgVs~kdIrRGdV~ 325 (445)
T TIGR00483 291 IEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVA 325 (445)
T ss_pred EEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
T ss_conf 76113436677778741220015560220014303
No 402
>KOG1547 consensus
Probab=94.39 E-value=0.055 Score=31.56 Aligned_cols=124 Identities=26% Similarity=0.409 Sum_probs=74.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHC-----CCCCCEEC--CCEE-EEECC---CCEEEEEECCCHHHHHHH--------
Q ss_conf 89862368504467778864222100-----12310001--2149-99517---843888851661578999--------
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKG-----EIGGITQH--IGAY-QVAYQ---GKNITFLDTPGHAAFYEM-------- 446 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~-----e~ggitq~--iga~-~~~~~---~~~~~~iDtPGh~~f~~~-------- 446 (884)
|-|.|.---||+||...|-++++-.. -+--|+|. |-+. ++-.+ ..++|+|||||+-+|.|.
T Consensus 49 IMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWePI~ 128 (336)
T KOG1547 49 IMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEPIE 128 (336)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCEEEEEEEECCCCCCCCCCCCCHHHHHH
T ss_conf 99980687771156788888887612589765675564278875344533066589988834898533337532067799
Q ss_pred ----------------HHHHHHCCCCE----EE-EEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCC-----CCCC
Q ss_conf ----------------86664206805----99-9983667402357778989970994156123312443-----3200
Q gi|254780787|r 447 ----------------RARGARVTDIA----VL-VLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLG-----ADPQ 500 (884)
Q Consensus 447 ----------------r~rg~~~~d~~----il-vv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~-----~~~~ 500 (884)
..|--.+.|-- ++ +=.--|.+.|=-+|.++.+-+. +-+|-+|-|-|-+. ++..
T Consensus 129 kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v-vNvvPVIakaDtlTleEr~~Fkq 207 (336)
T KOG1547 129 KYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV-VNVVPVIAKADTLTLEERSAFKQ 207 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHH-HEEEEEEEECCCCCHHHHHHHHH
T ss_conf 99999999999999867765138875478999996798875670449999988655-20433575066442777999999
Q ss_pred HHHHHHHCCC
Q ss_conf 0221000013
Q gi|254780787|r 501 KVRMSLLKHD 510 (884)
Q Consensus 501 ~~~~~~~~~~ 510 (884)
++.++|..++
T Consensus 208 rI~~el~~~~ 217 (336)
T KOG1547 208 RIRKELEKHG 217 (336)
T ss_pred HHHHHHHHCC
T ss_conf 9999999659
No 403
>PRK12739 elongation factor G; Reviewed
Probab=94.35 E-value=0.12 Score=29.15 Aligned_cols=72 Identities=15% Similarity=0.380 Sum_probs=47.7
Q ss_pred HCCCEEEEEEEEEEEEE----EEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHCCHHHHHHHCCC-
Q ss_conf 06940478888789997----8873389870789998521784698079966998998226257664460066872797-
Q gi|254780787|r 780 LLSPEIRETFLGNAEVL----EVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRFKDEVSEVHAGQ- 854 (884)
Q Consensus 780 ~l~~~~~~~~~g~a~v~----~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~- 854 (884)
+|+|.+.-.+....+.+ .++. .+-|.|.|..-..|.. +++ ..-.+..+-.|-.+++....|+
T Consensus 600 LlEPi~~~eI~~p~~~~g~V~~~L~-~RRG~i~~~~~~~g~~-------~I~-----a~iPv~e~fgf~~~LR~~T~G~a 666 (693)
T PRK12739 600 ILEPIMKVEVVTPEEYMGDVIGDLN-RRRGQIEGMEARGGAQ-------IVK-----AFVPLAEMFGYATDLRSATQGRA 666 (693)
T ss_pred EECCEEEEEEEECHHHHHHHHHHHH-HCCCEEECEEECCCCE-------EEE-----EEECHHHHHCHHHHHHHHCCCCE
T ss_conf 9756289999978899999999998-7689875627449909-------999-----99887886277899884388954
Q ss_pred EEEEEEECCE
Q ss_conf 6699972841
Q gi|254780787|r 855 DCGMAFEKYD 864 (884)
Q Consensus 855 ecgi~~~~~~ 864 (884)
-|-+.|.+|.
T Consensus 667 ~~~~~F~~y~ 676 (693)
T PRK12739 667 TFSMEFDHYE 676 (693)
T ss_pred EEEEEECCCC
T ss_conf 8999968862
No 404
>KOG0083 consensus
Probab=94.32 E-value=0.023 Score=34.10 Aligned_cols=148 Identities=20% Similarity=0.205 Sum_probs=82.5
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHCCC---CCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 86236850446777886422210012---310001214999517843888851661578999866642068059999836
Q gi|254780787|r 388 IMGHVDHGKTSLLDAIRKADVAKGEI---GGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAAD 464 (884)
Q Consensus 388 v~ghvd~GKt~lld~~r~~~~~~~e~---ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~ 464 (884)
.+|.--+|||-||=.......-.|-. -||--.-....+.....++.+-||-|.+.|-+....--.-+|..+||-|+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred CCCCCCCCCEEEEEEECCCCEECCCEEEEEEECCCCCEECCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 34567668568999951674003761133200121304513883899998523145777554476631656255433211
Q ss_pred CCCCHHHHHHH----HHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCH
Q ss_conf 67402357778----98997099415612331244332000221000013200012347403631100247741122100
Q gi|254780787|r 465 EEIMPQAIESI----NHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAI 540 (884)
Q Consensus 465 ~g~~~qt~e~~----~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (884)
.--.-..+-+| .-.-+..+.....-||+|.... ..+..+ .+....+. -..++...|+++|.|++..+-.+
T Consensus 82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~e--r~v~~d---dg~kla~~-y~ipfmetsaktg~nvd~af~~i 155 (192)
T KOG0083 82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHE--RAVKRD---DGEKLAEA-YGIPFMETSAKTGFNVDLAFLAI 155 (192)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH--HCCCCC---HHHHHHHH-HCCCCEECCCCCCCCHHHHHHHH
T ss_conf 3010778999999999998866767544253554123--045653---17889998-79971640330264376899999
Q ss_pred H
Q ss_conf 0
Q gi|254780787|r 541 L 541 (884)
Q Consensus 541 ~ 541 (884)
.
T Consensus 156 a 156 (192)
T KOG0083 156 A 156 (192)
T ss_pred H
T ss_conf 9
No 405
>COG1161 Predicted GTPases [General function prediction only]
Probab=94.29 E-value=0.074 Score=30.66 Aligned_cols=90 Identities=26% Similarity=0.296 Sum_probs=51.6
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHH-HCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 55303898623685044677788642221-00123100012149995178438888516615789998666420680599
Q gi|254780787|r 381 IRPPVVTIMGHVDHGKTSLLDAIRKADVA-KGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 381 ~R~pvv~v~ghvd~GKt~lld~~r~~~~~-~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
.+.=-|-|+|-=+.||+||+-+|.+.+++ .+--=|.|.++--..+. ..+.++||||=---..+=. +.+.+
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~---~~i~LlDtPGii~~~~~~~------~~v~~ 200 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD---DGIYLLDTPGIIPPKFDDD------ELVLL 200 (322)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEECCCEEEECC---CCEEEEECCCCCCCCCCCH------HHHHH
T ss_conf 55608999878976489999998620555237999620451689727---8628973888078864315------77753
Q ss_pred EEECCCCCCHHHHHHHHHHH
Q ss_conf 99836674023577789899
Q gi|254780787|r 460 VLAADEEIMPQAIESINHAK 479 (884)
Q Consensus 460 vv~~~~g~~~qt~e~~~~~~ 479 (884)
-++..+.+...+..+-.++.
T Consensus 201 ~l~~~~~Ik~~~~~~~~v~~ 220 (322)
T COG1161 201 KLAPKGEIKDPVLPADEVAE 220 (322)
T ss_pred CCCCCCCCCCCCCCHHHHHH
T ss_conf 47674544776538799999
No 406
>PRK07560 elongation factor EF-2; Reviewed
Probab=94.28 E-value=0.17 Score=28.17 Aligned_cols=98 Identities=13% Similarity=0.195 Sum_probs=58.6
Q ss_pred CCCEEEEEEHHHHH--HH------------HHHHHHH----HHCCCEEEEEEEEEEEEE----EEEECCCCCCEEEEEEE
Q ss_conf 39859975026789--99------------9999996----306940478888789997----88733898707899985
Q gi|254780787|r 756 DEIKILYYKIIYDL--LD------------SIKDSMS----ELLSPEIRETFLGNAEVL----EVFAVTKLGNVAGCKVS 813 (884)
Q Consensus 756 ~gV~I~~~~IIY~L--~d------------~~~~~~~----~~l~~~~~~~~~g~a~v~----~vF~~~k~~~i~G~~V~ 813 (884)
.||++..+|.-||- .+ .++++|. -+|+|..+-++....+.+ .... ++-|.|.|....
T Consensus 579 ~~v~v~l~dg~~h~d~v~~~~~~~~~A~~~a~~~a~~~a~p~LLEPi~~~eI~~P~~~~G~V~~dL~-~RRG~I~~~~~~ 657 (730)
T PRK07560 579 RGVKVRLHDAKLHEDAIHRGPAQVIPAVRNAIFAAMLSAKPTLLEPIQKVDINVPQDYMGAVTSEIQ-GRRGKILDMTQE 657 (730)
T ss_pred CCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEECHHHHHHHHHHHH-HCCCEEECEECC
T ss_conf 6679999974211563445637899999999999998779889856689999988899879999998-679588352236
Q ss_pred EEEEECCCEEEEEECCEEEEEEEEHHHHHCCHHHHHHHCCC-EEEEEEECCEEE
Q ss_conf 21784698079966998998226257664460066872797-669997284110
Q gi|254780787|r 814 EGKVERGSGVRLIRNSTVIYEGKLKTLKRFKDEVSEVHAGQ-DCGMAFEKYDNI 866 (884)
Q Consensus 814 ~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~-ecgi~~~~~~~~ 866 (884)
.+. .++ ...-.++.+-.+..+++....|. .+-+.|..|..+
T Consensus 658 ~~~-------~~I-----~A~vPlae~~gy~~~LRs~T~G~g~~~~~F~~y~~v 699 (730)
T PRK07560 658 GDM-------AII-----EAEAPVAEMFGFAGEIRSATEGRAFWSTEFAGFEPV 699 (730)
T ss_pred CCC-------EEE-----EEEECHHHHCCHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 991-------999-----999778986282899996688971699995886269
No 407
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=94.26 E-value=0.1 Score=29.67 Aligned_cols=157 Identities=22% Similarity=0.254 Sum_probs=93.9
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHH------HH--------------------------------------------HH
Q ss_conf 55303898623685044677788642------22--------------------------------------------10
Q gi|254780787|r 381 IRPPVVTIMGHVDHGKTSLLDAIRKA------DV--------------------------------------------AK 410 (884)
Q Consensus 381 ~R~pvv~v~ghvd~GKt~lld~~r~~------~~--------------------------------------------~~ 410 (884)
=|+-||-|-|-=-.||+|||++|-.. .| ..
T Consensus 36 GnA~~vG~TG~PGaGKSTl~~~l~~~lrRrG~~VaViAvDP~SPfTGGsiLGDr~Rm~~~asrkqlW~dPg~FIRs~ptr 115 (333)
T TIGR00750 36 GNAHVVGITGVPGAGKSTLVEKLIMELRRRGLKVAVIAVDPSSPFTGGSILGDRLRMQRLASRKQLWTDPGVFIRSMPTR 115 (333)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCC
T ss_conf 79078766468888577799999899976597689998879759755145456887754422223322898567677666
Q ss_pred CCCCCCEECCCEEEE--ECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 012310001214999--517843888851661578999866642068059999836674023577789899709941561
Q gi|254780787|r 411 GEIGGITQHIGAYQV--AYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVA 488 (884)
Q Consensus 411 ~e~ggitq~iga~~~--~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva 488 (884)
|..||.|+.-+.+-. ..-++-.-||-|=|==--=-- -+.++|-.|+|-=+.-|=+=|++=. =-..+--|++
T Consensus 116 G~lGGls~at~~~~~lldA~G~DVI~vETVGVGQSEVd---i~~~aDT~v~v~~pg~GDd~Q~iKa----G~mEiaDI~V 188 (333)
T TIGR00750 116 GSLGGLSKATRELVKLLDAAGYDVILVETVGVGQSEVD---IINMADTFVVVTIPGTGDDVQGIKA----GVMEIADIYV 188 (333)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHH---HHHHHCEEEEEECCCCCCHHHHHHH----HHHEEEEEEE
T ss_conf 75257879999999999863898799984157524878---8734150589854887834666654----4302324878
Q ss_pred CCCCCCCCCCC-CHHHH-HH--------------------HCCCCCCC-CCCCCCEEEEEEECCCCCCCCCCCCHHCCC
Q ss_conf 23312443320-00221-00--------------------00132000-123474036311002477411221000023
Q gi|254780787|r 489 INKIDKLGADP-QKVRM-SL--------------------LKHDVFVE-SMGGDILDVEISAKNNLNLDKLLDAILLQA 544 (884)
Q Consensus 489 ~nk~d~~~~~~-~~~~~-~~--------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (884)
+||-|+.+++. ..... +| .+.+.+-+ ..+...+.+.+||..|.|+++|.++|.-+.
T Consensus 189 VNKaD~~~a~~v~~~a~~~l~l~~esvqmlsqmthadearvq~G~~~~r~~gW~Ppv~~tsA~~G~Gi~EL~daI~eH~ 267 (333)
T TIGR00750 189 VNKADGEGAEEVKTLARLMLALDLESVQMLSQMTHADEARVQKGEIYRREKGWRPPVLKTSAVEGRGIDELWDAIEEHK 267 (333)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 8168876658999999998888888999998653333444302655110105899638873356887167899999999
No 408
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=94.24 E-value=0.05 Score=31.80 Aligned_cols=34 Identities=29% Similarity=0.418 Sum_probs=29.2
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 1255303898623685044677788642221001
Q gi|254780787|r 379 LDIRPPVVTIMGHVDHGKTSLLDAIRKADVAKGE 412 (884)
Q Consensus 379 ~~~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e 412 (884)
-....++|-|+|-||.|||||.-+|-+..++.|-
T Consensus 69 ~~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~ 102 (398)
T COG1341 69 SAGKVGVVMVVGPVDSGKSTLTTYLANKLLARGR 102 (398)
T ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 2068738999898676788999999988764474
No 409
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=94.22 E-value=0.091 Score=30.04 Aligned_cols=115 Identities=22% Similarity=0.380 Sum_probs=75.5
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCC------CC----CCEECCCEEEEECCC--CEEEEEECCCHHHHHHHH--
Q ss_conf 5303898623685044677788642221001------23----100012149995178--438888516615789998--
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKADVAKGE------IG----GITQHIGAYQVAYQG--KNITFLDTPGHAAFYEMR-- 447 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e------~g----gitq~iga~~~~~~~--~~~~~iDtPGh~~f~~~r-- 447 (884)
.+=.|-+.|-...||||++-.|-.+.+...- +. ++...+-...+.-++ ..+|+|||||.-+|...-
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEECCCCCCCCCCCCCC
T ss_conf 96389996278875557887656765257777557666667762588864316604874898888615886565464101
Q ss_pred ----------------------HHHHHCCCCEE----EEEE-CCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf ----------------------66642068059----9998-36674023577789899709941561233124433
Q gi|254780787|r 448 ----------------------ARGARVTDIAV----LVLA-ADEEIMPQAIESINHAKAADVSIIVAINKIDKLGA 497 (884)
Q Consensus 448 ----------------------~rg~~~~d~~i----lvv~-~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~ 497 (884)
.|-...+|-=| +-+. --||+.|.-+|.++.+-. .|-+|-+|-|-|....
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-~vNlIPVI~KaD~lT~ 177 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-RVNLIPVIAKADTLTD 177 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHC-CCCEEEEEECCCCCCH
T ss_conf 799999999999999998643455665446824899998468988787888999999853-3675656624665899
No 410
>pfam00503 G-alpha G-protein alpha subunit. G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase.
Probab=94.17 E-value=0.17 Score=28.21 Aligned_cols=81 Identities=17% Similarity=0.171 Sum_probs=51.6
Q ss_pred CEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC--------CCCCCHHHHHHHHHHHH-------
Q ss_conf 000121499951784388885166157899986664206805999983--------66740235777898997-------
Q gi|254780787|r 416 ITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA--------DEEIMPQAIESINHAKA------- 480 (884)
Q Consensus 416 itq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~--------~~g~~~qt~e~~~~~~~------- 480 (884)
-|-.|--+.|..++..+.++|.-|.-.=-.--...-.-.+.+|.||+. .|.-.....||+.+.+.
T Consensus 176 ~TtGI~e~~F~~~~~~~~l~DVGGqr~eRrKWi~~Fe~V~aIiFvvsLS~yDq~l~ED~~~NRl~eSl~LF~~i~n~~~f 255 (350)
T pfam00503 176 KTTGIVETTFSVKKVTFRMFDVGGQRSERKKWIHCFEDVTAIIFLVALSEYDQVLFEDESTNRMQESLKLFDSICNNRWF 255 (350)
T ss_pred CCCCCEEEEEEECCEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHH
T ss_conf 55784268987478679972488883335555666167646999843530132433586440899999999999648524
Q ss_pred CCCCEEEECCCCCCCC
Q ss_conf 0994156123312443
Q gi|254780787|r 481 ADVSIIVAINKIDKLG 496 (884)
Q Consensus 481 ~~~p~iva~nk~d~~~ 496 (884)
.++|+|+.+||+|...
T Consensus 256 ~~t~iiLfLNK~Dlf~ 271 (350)
T pfam00503 256 KNTSIILFLNKKDLFE 271 (350)
T ss_pred CCCCEEEEEECHHHHH
T ss_conf 5798799976778899
No 411
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=94.17 E-value=0.33 Score=26.25 Aligned_cols=115 Identities=21% Similarity=0.255 Sum_probs=70.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHH------HHHHHCCCCCCEEC----CCE-----EEEECC--------------------
Q ss_conf 0389862368504467778864------22210012310001----214-----999517--------------------
Q gi|254780787|r 384 PVVTIMGHVDHGKTSLLDAIRK------ADVAKGEIGGITQH----IGA-----YQVAYQ-------------------- 428 (884)
Q Consensus 384 pvv~v~ghvd~GKt~lld~~r~------~~~~~~e~ggitq~----iga-----~~~~~~-------------------- 428 (884)
||.-|-|---.||||||-.|.. ..|.-.|.|-|-.. +.. +++...
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred CEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCHHHHHHHHHHHC
T ss_conf 77998116779989999999854589807999855740221677641348975798369707870342158999999852
Q ss_pred --CCEEEEEECCCHH-------HHHH-HHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCC
Q ss_conf --8438888516615-------7899-98666420680599998366740235777898997099415612331244332
Q gi|254780787|r 429 --GKNITFLDTPGHA-------AFYE-MRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGAD 498 (884)
Q Consensus 429 --~~~~~~iDtPGh~-------~f~~-~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~ 498 (884)
..-..+|-|-|=+ +|.. +--+..---|.+|-|||+.+......-..-..-.+...--+|.|||+|.....
T Consensus 82 ~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD~ivlNK~Dlv~~~ 161 (323)
T COG0523 82 RDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFADVIVLNKTDLVDAE 161 (323)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCEEECCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHH
T ss_conf 56899899968877786999998606512245404133699984788654567799999999986799998364568988
No 412
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=94.16 E-value=0.2 Score=27.72 Aligned_cols=72 Identities=21% Similarity=0.435 Sum_probs=57.1
Q ss_pred EEECC--CCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHH-HCCHHHHHHHCCCEEEEEEECCEEEEECCEE
Q ss_conf 87338--987078999852178469807996699899822625766-4460066872797669997284110058989
Q gi|254780787|r 798 VFAVT--KLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLK-RFKDEVSEVHAGQDCGMAFEKYDNIQAGDMI 872 (884)
Q Consensus 798 vF~~~--k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~-~~k~~v~ev~~g~ecgi~~~~~~~~~~gD~i 872 (884)
+|++. .-|.++=++|-+|+|++|..+...|.+...-.++|-.+. ...++|.|+..|+=|++. +. +...||.|
T Consensus 5 vFK~~~d~~G~lsf~RVysG~l~~g~~v~n~~~~~~eri~~l~~~~~~~~~~v~~a~aGDIvav~--gl-~~~tGDTL 79 (81)
T cd04091 5 AFKLEEGRFGQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICAIF--GI-DCASGDTF 79 (81)
T ss_pred EEEEECCCCCCEEEEEEEEEEECCCCEEEECCCCCEEEEEEEEEEECCCCEECCEECCCCEEEEE--CC-CCCCCCCC
T ss_conf 99876189988999999672887999999786891687202289978985076568799899998--99-96747763
No 413
>KOG0458 consensus
Probab=94.15 E-value=0.15 Score=28.56 Aligned_cols=23 Identities=9% Similarity=0.140 Sum_probs=10.3
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 999866642068059999836674
Q gi|254780787|r 444 YEMRARGARVTDIAVLVLAADEEI 467 (884)
Q Consensus 444 ~~~r~rg~~~~d~~ilvv~~~~g~ 467 (884)
..+..|+..+..++|.|= =||-|
T Consensus 306 ha~llr~Lgi~qlivaiN-KmD~V 328 (603)
T KOG0458 306 HALLLRSLGISQLIVAIN-KMDLV 328 (603)
T ss_pred HHHHHHHCCCCEEEEEEE-CCCCC
T ss_conf 999998749525888863-01012
No 414
>KOG0081 consensus
Probab=93.92 E-value=0.15 Score=28.51 Aligned_cols=142 Identities=20% Similarity=0.191 Sum_probs=78.0
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEE-----------C-------CCCEEEEEECCCHHHHHHHHH
Q ss_conf 9862368504467778864222100123100012149995-----------1-------784388885166157899986
Q gi|254780787|r 387 TIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVA-----------Y-------QGKNITFLDTPGHAAFYEMRA 448 (884)
Q Consensus 387 ~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~-----------~-------~~~~~~~iDtPGh~~f~~~r~ 448 (884)
-.||.-..|||++|-.-. ++.. -||-|...-+. . ....+.+-||-|.|.|-++-.
T Consensus 13 LaLGDSGVGKTs~Ly~YT-----D~~F--~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTT 85 (219)
T KOG0081 13 LALGDSGVGKTSFLYQYT-----DGKF--NTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTT 85 (219)
T ss_pred HHHCCCCCCCEEEEEEEC-----CCCC--CCEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEEECCCCHHHHHHHHH
T ss_conf 740467777347898732-----7853--343577740134400478834689988752289875200104788888899
Q ss_pred HHHHCCCCEEEEEECCCCCC-HHHHHHHHHHHHC---CCCEEEE-CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEE
Q ss_conf 66420680599998366740-2357778989970---9941561-23312443320002210000132000123474036
Q gi|254780787|r 449 RGARVTDIAVLVLAADEEIM-PQAIESINHAKAA---DVSIIVA-INKIDKLGADPQKVRMSLLKHDVFVESMGGDILDV 523 (884)
Q Consensus 449 rg~~~~d~~ilvv~~~~g~~-~qt~e~~~~~~~~---~~p~iva-~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (884)
-=-.-+=.-+|+.|+..--. --+..-+..++.. .-|-||. -||.|++....-...+ .......+ ..+.+
T Consensus 86 AFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~q----a~~La~ky--glPYf 159 (219)
T KOG0081 86 AFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQ----AAALADKY--GLPYF 159 (219)
T ss_pred HHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHH----HHHHHHHH--CCCEE
T ss_conf 9998501115888625337788799899998774013799989986712316665523999----99999973--99826
Q ss_pred EEEECCCCCCCCCCCCHH
Q ss_conf 311002477411221000
Q gi|254780787|r 524 EISAKNNLNLDKLLDAIL 541 (884)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~ 541 (884)
..||-+|.|+++..+.++
T Consensus 160 ETSA~tg~Nv~kave~Ll 177 (219)
T KOG0081 160 ETSACTGTNVEKAVELLL 177 (219)
T ss_pred EECCCCCCCHHHHHHHHH
T ss_conf 602455768999999999
No 415
>KOG1486 consensus
Probab=93.87 E-value=0.12 Score=29.26 Aligned_cols=87 Identities=32% Similarity=0.480 Sum_probs=61.8
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHH--HHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHH-HHHHHHHH-----
Q ss_conf 1255303898623685044677788642--221001231000121499951784388885166157-89998666-----
Q gi|254780787|r 379 LDIRPPVVTIMGHVDHGKTSLLDAIRKA--DVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAA-FYEMRARG----- 450 (884)
Q Consensus 379 ~~~R~pvv~v~ghvd~GKt~lld~~r~~--~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~-f~~~r~rg----- 450 (884)
++.--.=|..+|--..||+|||.+|..| ..+..|.-..|---|..+ .++..|.++|-||--. -+--+-||
T Consensus 58 ~KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~--y~ga~IQllDLPGIieGAsqgkGRGRQvia 135 (364)
T KOG1486 58 LKSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIH--YNGANIQLLDLPGIIEGASQGKGRGRQVIA 135 (364)
T ss_pred ECCCCEEEEEECCCCCCHHHHHHHHHCCHHHHHCCEEEEEEEECCEEE--ECCCEEEEECCCCCCCCCCCCCCCCCEEEE
T ss_conf 315873799964887447878887641102221102467873031687--668347996275300021137887726888
Q ss_pred -HHCCCCEEEEEECCCCC
Q ss_conf -42068059999836674
Q gi|254780787|r 451 -ARVTDIAVLVLAADEEI 467 (884)
Q Consensus 451 -~~~~d~~ilvv~~~~g~ 467 (884)
|.-+|+++.|.||..+-
T Consensus 136 vArtaDlilMvLDatk~e 153 (364)
T KOG1486 136 VARTADLILMVLDATKSE 153 (364)
T ss_pred EEECCCEEEEEECCCCCH
T ss_conf 740365899995177615
No 416
>pfam01656 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain. This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Probab=93.86 E-value=0.17 Score=28.27 Aligned_cols=66 Identities=17% Similarity=0.170 Sum_probs=47.5
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEECCCCCCCC
Q ss_conf 843888851661578999866642068059999836674023577789899709941-56123312443
Q gi|254780787|r 429 GKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSI-IVAINKIDKLG 496 (884)
Q Consensus 429 ~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~-iva~nk~d~~~ 496 (884)
..-+.+||||+.-.+.. ......+|.+|+|+..+--=.--+.-.+.+++..++++ -|++||+|+-.
T Consensus 112 ~~D~viiD~pp~~~~~~--~~al~~ad~vivv~~p~~~sl~~~~~l~~~~~~l~~~~~gvV~N~~~~~~ 178 (212)
T pfam01656 112 AYDYVIIDGAPGLGELT--ANALVAADILVVPIEPEGVAVLGAQRLLELVERLGLKILGVVLNKVDRGD 178 (212)
T ss_pred CCCEEEEECCCCCCHHH--HHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 49989994799755999--99998399899994897699999999999999859962299991488998
No 417
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=93.73 E-value=0.17 Score=28.15 Aligned_cols=69 Identities=23% Similarity=0.339 Sum_probs=52.6
Q ss_pred EEECC---CCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHC----CHHHHHHHCCCEEEEEEECCEEEEECC
Q ss_conf 87338---98707899985217846980799669989982262576644----600668727976699972841100589
Q gi|254780787|r 798 VFAVT---KLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRF----KDEVSEVHAGQDCGMAFEKYDNIQAGD 870 (884)
Q Consensus 798 vF~~~---k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~----k~~v~ev~~g~ecgi~~~~~~~~~~gD 870 (884)
||++. ..|.++=++|.+|+|+.+..+.+.++.. .+|..|..+ ..+|.++..|+=|++. +..+++.||
T Consensus 8 VFKi~~d~~~grl~yvRv~sG~l~~~~~v~~~~~~~----eki~~l~~~~~~~~~~v~~~~AGdI~av~--gl~~~~~GD 81 (85)
T cd03690 8 VFKIERDDKGERLAYLRLYSGTLRLRDSVRVNREEK----IKITELRVFNNGEVVTADTVTAGDIAILT--GLKGLRVGD 81 (85)
T ss_pred EEEEEECCCCCEEEEEEEEEEEECCCCEEECCCCCE----EEECEEEEEECCCEEECCEECCCCEEEEE--CCCCCCCCC
T ss_conf 998887799985999998340982898896589960----40234899908995697789899999998--999883777
Q ss_pred EE
Q ss_conf 89
Q gi|254780787|r 871 MI 872 (884)
Q Consensus 871 ~i 872 (884)
.|
T Consensus 82 tl 83 (85)
T cd03690 82 VL 83 (85)
T ss_pred CC
T ss_conf 22
No 418
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=93.40 E-value=0.062 Score=31.18 Aligned_cols=29 Identities=31% Similarity=0.520 Sum_probs=25.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 03898623685044677788642221001
Q gi|254780787|r 384 PVVTIMGHVDHGKTSLLDAIRKADVAKGE 412 (884)
Q Consensus 384 pvv~v~ghvd~GKt~lld~~r~~~~~~~e 412 (884)
|+|.|.|.-|.|||||+-.|-+.-+..|-
T Consensus 1 p~v~i~G~~~sGKttl~~~L~~~~~~~g~ 29 (122)
T pfam03205 1 PIVLVVGPKDSGKTTLIRKLLNYLKRRGY 29 (122)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 97999948999899999999999998799
No 419
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=93.36 E-value=0.34 Score=26.16 Aligned_cols=22 Identities=41% Similarity=0.696 Sum_probs=19.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHH
Q ss_conf 0389862368504467778864
Q gi|254780787|r 384 PVVTIMGHVDHGKTSLLDAIRK 405 (884)
Q Consensus 384 pvv~v~ghvd~GKt~lld~~r~ 405 (884)
||.-|-|---.||||||-.|.+
T Consensus 1 Pv~iitGFLGaGKTTll~~lL~ 22 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILT 22 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHH
T ss_conf 9089984888999999999984
No 420
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=93.15 E-value=0.11 Score=29.62 Aligned_cols=85 Identities=20% Similarity=0.231 Sum_probs=62.3
Q ss_pred EEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHH-HCCHHHHHHHCCCEEEEEEECCEEE-EEC
Q ss_conf 89997887338987078999852178469807996699899822625766-4460066872797669997284110-058
Q gi|254780787|r 792 NAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLK-RFKDEVSEVHAGQDCGMAFEKYDNI-QAG 869 (884)
Q Consensus 792 ~a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~-~~k~~v~ev~~g~ecgi~~~~~~~~-~~g 869 (884)
.+.|+....-+..|.++=+.|.+|+|+.|..+ +=+. ..|+|.+|. ...+.|+++.-|+=+-| -+|++. ..|
T Consensus 2 ~g~VlEs~~d~~~G~vatviV~~GtL~~Gd~~--v~G~---~~gkVr~l~d~~g~~v~~A~Ps~pV~I--~G~~~~P~aG 74 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVL--VAGT---TYGKVRAMFDENGKRVKEAGPSTPVEI--LGLKGVPQAG 74 (95)
T ss_pred EEEEEEEEECCCCCCEEEEEEECCEEECCCEE--EECC---EEEEEEEEECCCCCCCCEECCCCCEEE--ECCCCCCCCC
T ss_conf 49999999769988479999915802069898--8786---388999999999999988869985999--5789999999
Q ss_pred CEEEEEEEEEEEEC
Q ss_conf 98999889998514
Q gi|254780787|r 870 DMIECFSIEHIKRS 883 (884)
Q Consensus 870 D~i~~~~~~~~~~~ 883 (884)
|.+.++.-+..++.
T Consensus 75 d~~~~v~sek~Ak~ 88 (95)
T cd03702 75 DKFLVVESEKEAKE 88 (95)
T ss_pred CEEEEECCHHHHHH
T ss_conf 98999599999999
No 421
>PRK09602 translation-associated GTPase; Reviewed
Probab=92.93 E-value=0.58 Score=24.53 Aligned_cols=73 Identities=22% Similarity=0.342 Sum_probs=46.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHC--CCCCCEECCCEEEEEC--C--------------------CCEEEEEECCCH-
Q ss_conf 89862368504467778864222100--1231000121499951--7--------------------843888851661-
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKG--EIGGITQHIGAYQVAY--Q--------------------GKNITFLDTPGH- 440 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~--e~ggitq~iga~~~~~--~--------------------~~~~~~iDtPGh- 440 (884)
|.|.|-=+.|||||+-+|.++++... -...|-=++|..++.. + -..+.|+|.||=
T Consensus 5 ~GIVGLPNvGKSTlFnaLT~~~~~~aNyPF~TIePn~Gi~~v~v~~pd~~l~~~~~~~~~~~~~~~~~vpie~vDIAGLV 84 (396)
T PRK09602 5 IGLVGKPNVGKSTFFSAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGVRFIPVELIDVAGLV 84 (396)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCC
T ss_conf 88888999988999999977998645899888778436252336884366654306542213577336558998755567
Q ss_pred -----------HHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf -----------57899986664206805999983
Q gi|254780787|r 441 -----------AAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 441 -----------~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
.=++++| -||..+.||++
T Consensus 85 kGAS~GeGLGNkFLs~IR-----evDaI~hVVr~ 113 (396)
T PRK09602 85 PGAHEGRGLGNQFLDDLR-----QADALIHVVDA 113 (396)
T ss_pred CCCCCCCCCCHHHHHHHH-----HCCEEEEEEEC
T ss_conf 650116876089999887-----26879999753
No 422
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=92.93 E-value=0.42 Score=25.52 Aligned_cols=92 Identities=21% Similarity=0.331 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEEECCCCCC--------EEEEEEEEEEEECCCEEE------EEECCEEE
Q ss_conf 7899999999963069404788887899978873389870--------789998521784698079------96699899
Q gi|254780787|r 767 YDLLDSIKDSMSELLSPEIRETFLGNAEVLEVFAVTKLGN--------VAGCKVSEGKVERGSGVR------LIRNSTVI 832 (884)
Q Consensus 767 Y~L~d~~~~~~~~~l~~~~~~~~~g~a~v~~vF~~~k~~~--------i~G~~V~~G~i~~~~~~~------v~r~~~~i 832 (884)
--|+|.+++++ -.|.......-..-|.--|+++|-|+ |+|-..+.|.++-|..+. +-++|++.
T Consensus 191 Dal~e~i~~~I---ptP~rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~ 267 (415)
T COG5257 191 DALIEAIEKYI---PTPERDLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTV 267 (415)
T ss_pred HHHHHHHHHHC---CCCCCCCCCCCEEEEEEECCCCCCCCCHHHCCCCEECCEEEEEEEECCCEEEECCCEEEECCCCEE
T ss_conf 99999999868---998667899966999864035899899777247432220255368538757854881760399247
Q ss_pred EE---EEEHHHHHCCHHHHHHHCCCEEEEEEE
Q ss_conf 82---262576644600668727976699972
Q gi|254780787|r 833 YE---GKLKTLKRFKDEVSEVHAGQDCGMAFE 861 (884)
Q Consensus 833 ~~---g~i~sl~~~k~~v~ev~~g~ecgi~~~ 861 (884)
|. -+|.||+-...+|+|++-|-=.||+-.
T Consensus 268 ~~pi~T~i~Sl~ag~~~~~ea~PGGLvgvGT~ 299 (415)
T COG5257 268 WEPITTEIVSLQAGGEDVEEARPGGLVGVGTK 299 (415)
T ss_pred EEEEEEEEEEEEECCEEEEECCCCCEEEEECC
T ss_conf 78713899999737766431268836877334
No 423
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=92.80 E-value=0.15 Score=28.58 Aligned_cols=43 Identities=19% Similarity=0.265 Sum_probs=31.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEECCCCCCCCC
Q ss_conf 80599998366740235777898997--09941561233124433
Q gi|254780787|r 455 DIAVLVLAADEEIMPQAIESINHAKA--ADVSIIVAINKIDKLGA 497 (884)
Q Consensus 455 d~~ilvv~~~~g~~~qt~e~~~~~~~--~~~p~iva~nk~d~~~~ 497 (884)
|++|.|+||-..+-..--+--.+++. .+-|+|+++||+|+...
T Consensus 1 DvVleV~DAR~Plss~np~l~~~~~~~~~~K~~ilVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECHHCCCH
T ss_conf 989999970378676887499999860699848999852321898
No 424
>KOG1143 consensus
Probab=92.75 E-value=0.23 Score=27.32 Aligned_cols=75 Identities=24% Similarity=0.453 Sum_probs=62.5
Q ss_pred EEEEEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEE--EECCEEEEEEEEHHHHHCCHHHHHHHCCCEEEEEEECCE
Q ss_conf 8878999788733898707899985217846980799--669989982262576644600668727976699972841
Q gi|254780787|r 789 FLGNAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRL--IRNSTVIYEGKLKTLKRFKDEVSEVHAGQDCGMAFEKYD 864 (884)
Q Consensus 789 ~~g~a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v--~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~~~ 864 (884)
....-.|-.+|+.+..|.|+|-....|.++-|..+-| +.||. -+.-++.||+|.+..+..|+.|+-..++|.+|+
T Consensus 401 ~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~-F~~itV~sI~Rnr~acrvvraGqaAslsl~d~D 477 (591)
T KOG1143 401 LPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGT-FEKITVGSIRRNRQACRVVRAGQAASLSLNDPD 477 (591)
T ss_pred CCCEEEHHHEECCCCCCCCCCCEEEECEECCCCEEEEECCCCCC-EEEEEEEEEECCCCCEEEECCCCCEEEECCCCC
T ss_conf 76226674705677656503115422323268605750479983-467886236416642026327631155226887
No 425
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=92.63 E-value=0.33 Score=26.24 Aligned_cols=58 Identities=12% Similarity=0.166 Sum_probs=40.5
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH------HHHHHHHHH------HCCCCEEEECCCCCC
Q ss_conf 843888851661578999866642068059999836674023------577789899------709941561233124
Q gi|254780787|r 429 GKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQ------AIESINHAK------AADVSIIVAINKIDK 494 (884)
Q Consensus 429 ~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~~~q------t~e~~~~~~------~~~~p~iva~nk~d~ 494 (884)
+..+.||||||+.+... .....++|++|+ -++|. +.+.+.+.. ...+|+-|.++.+-.
T Consensus 83 ~yD~VIIDtpg~~s~~~--~~AI~~ADlVLI------P~qpSplD~~~a~~t~~~i~~~~~~~~~~ip~avl~tRv~~ 152 (231)
T pfam07015 83 GFDYALADTHGGSSELN--NTIIASSDLLLI------PTMLTPLDIDEALATYRYVIELLLTENLAIPTAILRQRVPV 152 (231)
T ss_pred CCCEEEECCCCCCCHHH--HHHHHHCCEEEE------CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 99989983998575899--999997898997------78998233999999999999999973789980334551140
No 426
>PRK00007 elongation factor G; Reviewed
Probab=92.56 E-value=0.2 Score=27.71 Aligned_cols=97 Identities=16% Similarity=0.397 Sum_probs=61.0
Q ss_pred CCEEEEEEHHHHHHH------------HHHHHHH----HHCCCEEEEEEEEEEEEE----EEEECCCCCCEEEEEEEEEE
Q ss_conf 985997502678999------------9999996----306940478888789997----88733898707899985217
Q gi|254780787|r 757 EIKILYYKIIYDLLD------------SIKDSMS----ELLSPEIRETFLGNAEVL----EVFAVTKLGNVAGCKVSEGK 816 (884)
Q Consensus 757 gV~I~~~~IIY~L~d------------~~~~~~~----~~l~~~~~~~~~g~a~v~----~vF~~~k~~~i~G~~V~~G~ 816 (884)
||++..+|--||-+| .+++++. -+|+|.+.-++....+.+ .... ++-|.|.|..-..|.
T Consensus 563 ~vkv~l~dg~~h~vds~~~af~~A~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~G~V~~dL~-~RRG~i~~~~~~~~~ 641 (693)
T PRK00007 563 DVKVTLFDGSYHDVDSSEMAFKIAGSMAFKEAAKKANPVLLEPIMKVEVVTPEDYMGDVIGDLN-SRRGQIQGMEDRGGA 641 (693)
T ss_pred EEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEECHHHHHHHHHHHH-HCCCEEECEEECCCC
T ss_conf 1599998067557887468999999999999998669889768379999948899899999998-769887462633990
Q ss_pred EECCCEEEEEECCEEEEEEEEHHHHHCCHHHHHHHCCCE-EEEEEECCEEE
Q ss_conf 846980799669989982262576644600668727976-69997284110
Q gi|254780787|r 817 VERGSGVRLIRNSTVIYEGKLKTLKRFKDEVSEVHAGQD-CGMAFEKYDNI 866 (884)
Q Consensus 817 i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~e-cgi~~~~~~~~ 866 (884)
. + +-..-.+..+-.|-.+.+....|+= |-+.|..|..+
T Consensus 642 ~-------~-----I~a~vP~~E~~gy~~~LRs~T~G~g~~~~~F~~y~~v 680 (693)
T PRK00007 642 K-------V-----IRAEVPLSEMFGYATDLRSMTQGRATYSMEFDHYEEV 680 (693)
T ss_pred E-------E-----EEEEECHHHHHCHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf 9-------9-----9999887886285799785388935899994866439
No 427
>KOG0448 consensus
Probab=92.38 E-value=0.73 Score=23.86 Aligned_cols=121 Identities=24% Similarity=0.367 Sum_probs=77.1
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEE----------------------CCCEEE------------
Q ss_conf 1255303898623685044677788642221001231000----------------------121499------------
Q gi|254780787|r 379 LDIRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQ----------------------HIGAYQ------------ 424 (884)
Q Consensus 379 ~~~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq----------------------~iga~~------------ 424 (884)
+..|.-.|.|-|-+..||+|+.-++.+-.+-.+-.|-+|- +|..+.
T Consensus 105 l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~ 184 (749)
T KOG0448 105 LARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDK 184 (749)
T ss_pred HHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 85213479995787776899999999872076666553123466314677311551688734321888777787517330
Q ss_pred ---------EECCCC-------EEEEEECCCHHHHHHHHHHH---HHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf ---------951784-------38888516615789998666---42068059999836674023577789899709941
Q gi|254780787|r 425 ---------VAYQGK-------NITFLDTPGHAAFYEMRARG---ARVTDIAVLVLAADEEIMPQAIESINHAKAADVSI 485 (884)
Q Consensus 425 ---------~~~~~~-------~~~~iDtPGh~~f~~~r~rg---~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~ 485 (884)
+-|+.. -+.+||-||-..=+..-.-- ---+|+.|||+-+.--+ .|+.-.+-+.-..+-|-
T Consensus 185 ~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntl-t~sek~Ff~~vs~~Kpn 263 (749)
T KOG0448 185 DLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTL-TLSEKQFFHKVSEEKPN 263 (749)
T ss_pred CCCCCEEEEEEECCCCCHHHHCCCEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHH-HHHHHHHHHHHHCCCCC
T ss_conf 03765068999428632133055012058888886024599997644077589996176386-89899999985404884
Q ss_pred EEEC-CCCCCCCCCCC
Q ss_conf 5612-33124433200
Q gi|254780787|r 486 IVAI-NKIDKLGADPQ 500 (884)
Q Consensus 486 iva~-nk~d~~~~~~~ 500 (884)
|+.| ||-|.....++
T Consensus 264 iFIlnnkwDasase~e 279 (749)
T KOG0448 264 IFILNNKWDASASEPE 279 (749)
T ss_pred EEEEECHHHHHCCCHH
T ss_conf 7999640122026377
No 428
>TIGR00618 sbcc exonuclease SbcC; InterPro: IPR004592 All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. SbcC may have nuclease activity that is functionally related to one of the nuclease activities of the RecBCD enzyme (IPR004586 from INTERPRO).; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=92.30 E-value=0.09 Score=30.06 Aligned_cols=22 Identities=50% Similarity=0.637 Sum_probs=19.6
Q ss_pred CCEEEEEECCCCCHHHHHHHHH
Q ss_conf 3038986236850446777886
Q gi|254780787|r 383 PPVVTIMGHVDHGKTSLLDAIR 404 (884)
Q Consensus 383 ~pvv~v~ghvd~GKt~lld~~r 404 (884)
.|++||.|---.|||||||+|.
T Consensus 30 l~~f~i~G~tGAGKtsLldAI~ 51 (1063)
T TIGR00618 30 LKLFVICGKTGAGKTSLLDAIT 51 (1063)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 5736777889983545999999
No 429
>KOG1145 consensus
Probab=92.23 E-value=0.27 Score=26.80 Aligned_cols=13 Identities=23% Similarity=0.197 Sum_probs=4.1
Q ss_pred HHHHHCCCEEEEE
Q ss_conf 9999839859975
Q gi|254780787|r 751 VLAIKDEIKILYY 763 (884)
Q Consensus 751 ~~A~~~gV~I~~~ 763 (884)
++|+..+-.|+.+
T Consensus 517 elA~~~daiI~~F 529 (683)
T KOG1145 517 ELAQASDAIIYGF 529 (683)
T ss_pred HHHHHCCCEEEEE
T ss_conf 7887428589999
No 430
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=92.10 E-value=0.09 Score=30.06 Aligned_cols=125 Identities=11% Similarity=0.064 Sum_probs=55.2
Q ss_pred HHCCCCHHHHHHHHHCCCCCEEEEEEE-ECCCCCC--CHHHHHHHHHC-CCEEEEECCC--CCHHHHHHHHH-C-CCEEE
Q ss_conf 310231234555421157653565788-5126857--57788764325-9879996389--99899999998-3-98599
Q gi|254780787|r 690 GDVQGSVEAIVDSLGALKNSEVCLSIV-HSSVGAI--NETDVSLAKAS-GAVIFGFNVR--ASSQARVLAIK-D-EIKIL 761 (884)
Q Consensus 690 ~d~~gs~eal~~~l~~~~~~ev~i~v~-~~~VG~v--~~~DV~~A~~~-~a~Il~FnVk--v~~~a~~~A~~-~-gV~I~ 761 (884)
.|+...+.++.......+...+-..+- ..|=|.+ .++-|..+... .-+=+-|+++ +....+..|.+ . +-.|.
T Consensus 381 tDt~~Ei~~i~~~~~~~gv~~~ls~vwakGg~Gg~eLA~kVv~~~~~~~~~f~~lYd~~~~i~~Ki~~I~~~iYga~~v~ 460 (554)
T COG2759 381 TDTEAEIAAIEKLCEEHGVEVALSEVWAKGGEGGIELAKKVVEAIEQNDSEFKRLYDVEDPIEEKIEKIAKEIYGADGVE 460 (554)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 88899999999999975996554165550573489999999999747855430301467768999999999851876345
Q ss_pred EEEHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEEECCCCCCE------EEEEEEEEEEECCCEE
Q ss_conf 7502678999999999630694047888878999788733898707------8999852178469807
Q gi|254780787|r 762 YYKIIYDLLDSIKDSMSELLSPEIRETFLGNAEVLEVFAVTKLGNV------AGCKVSEGKVERGSGV 823 (884)
Q Consensus 762 ~~~IIY~L~d~~~~~~~~~l~~~~~~~~~g~a~v~~vF~~~k~~~i------~G~~V~~G~i~~~~~~ 823 (884)
.. +..-+++..+-+..+... .+|.|+-++-|. ..++. .-+.|.+=++..|+.+
T Consensus 461 ~s---~~A~~ql~~~~~~g~d~l----PiCmAKTqYS~S--ddp~llg~P~~F~v~Ir~~~~s~GAGF 519 (554)
T COG2759 461 FS---PKAKEQLKTFEKQGFDNL----PICMAKTQYSFS--DDPSLLGAPTGFTVPIRELRLSAGAGF 519 (554)
T ss_pred EC---HHHHHHHHHHHHHCCCCC----CEEEECCCCCCC--CCHHHCCCCCCCEEEEEEEEECCCCCE
T ss_conf 68---999999999998188877----536763756656--897663999885787257676377836
No 431
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=92.08 E-value=0.79 Score=23.62 Aligned_cols=70 Identities=21% Similarity=0.295 Sum_probs=49.1
Q ss_pred EEEEEEECCC-CCCEEEEEEEEEEEECCCEEEEEECC---------EEEEEEEEHH-HHHCCHHHHHHHCCCEEEEE-EE
Q ss_conf 9978873389-87078999852178469807996699---------8998226257-66446006687279766999-72
Q gi|254780787|r 794 EVLEVFAVTK-LGNVAGCKVSEGKVERGSGVRLIRNS---------TVIYEGKLKT-LKRFKDEVSEVHAGQDCGMA-FE 861 (884)
Q Consensus 794 ~v~~vF~~~k-~~~i~G~~V~~G~i~~~~~~~v~r~~---------~~i~~g~i~s-l~~~k~~v~ev~~g~ecgi~-~~ 861 (884)
-|.+.+..+. ...+|=|+|-+|+|++|..++|+..+ .....+.|-= .=|....|.+|..|.=|||. |+
T Consensus 4 ~v~K~~~~~d~~~F~af~RV~SGtl~~G~~V~Vlg~~y~~~~~~d~~~~~V~~l~l~~Gr~~~~v~~v~AGniv~I~Gld 83 (94)
T cd04090 4 HVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIKGID 83 (94)
T ss_pred EEEEECCCCCCCEEEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCEEEEEEEEEEECCCEEEECCCCCCCCEEEEECCC
T ss_conf 99861114999889999999886784899999979998989854104989668999621148797826998899998240
Q ss_pred CC
Q ss_conf 84
Q gi|254780787|r 862 KY 863 (884)
Q Consensus 862 ~~ 863 (884)
++
T Consensus 84 ~~ 85 (94)
T cd04090 84 SS 85 (94)
T ss_pred CC
T ss_conf 03
No 432
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.04 E-value=0.32 Score=26.34 Aligned_cols=113 Identities=21% Similarity=0.205 Sum_probs=72.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHH------HHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCH------HHHHH----
Q ss_conf 530389862368504467778864------22210012310001214999517843888851661------57899----
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRK------ADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGH------AAFYE---- 445 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~------~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh------~~f~~---- 445 (884)
.-|=--|||-=..||||+|..--- ..-+.+..+.-|++-- .+....-.+|||-|- +++.+
T Consensus 124 eLPWy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cd----wwf~deaVlIDtaGry~~q~s~~~~~~~~W 199 (1188)
T COG3523 124 ELPWYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCD----WWFTDEAVLIDTAGRYITQDSADEVDRAEW 199 (1188)
T ss_pred CCCCEEEECCCCCCCCHHHHCCCCCCCCHHHHCCCCCCCCCCCCCC----CCCCCCEEEECCCCCEECCCCCCHHHHHHH
T ss_conf 1880588548889840087515536661555331222688873357----542553489858752443667502348889
Q ss_pred --H-----HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHH-------------HHCCCCEEEECCCCCCCCCC
Q ss_conf --9-----86664206805999983667402357778989-------------97099415612331244332
Q gi|254780787|r 446 --M-----RARGARVTDIAVLVLAADEEIMPQAIESINHA-------------KAADVSIIVAINKIDKLGAD 498 (884)
Q Consensus 446 --~-----r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~-------------~~~~~p~iva~nk~d~~~~~ 498 (884)
. +.|...-.|++||-+|+.+=....--|-.+++ -..-.|.-|++||+|...++
T Consensus 200 ~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~GF 272 (1188)
T COG3523 200 LGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPGF 272 (1188)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCH
T ss_conf 9988899973557888637999789997389999999999999999999998415677638998621002157
No 433
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.03 E-value=0.32 Score=26.34 Aligned_cols=114 Identities=17% Similarity=0.142 Sum_probs=63.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHH-HH-CCCCCCEE---CCCEE--------------EEE-----------CCCCEEEE
Q ss_conf 389862368504467778864222-10-01231000---12149--------------995-----------17843888
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADV-AK-GEIGGITQ---HIGAY--------------QVA-----------YQGKNITF 434 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~-~~-~e~ggitq---~iga~--------------~~~-----------~~~~~~~~ 434 (884)
||+++|----||||-+-+|=-..+ .. .-.|=||- .|||. ++- .....+-|
T Consensus 225 vi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQLktYa~Il~iPv~vv~~~~el~~al~~~~~DlIL 304 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELIL 304 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCEEE
T ss_conf 99998999988899999999999997499279995266537799999999998599459951899999999856999999
Q ss_pred EECCCHHHHHHHHHHHH----HC----CC-CEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
Q ss_conf 85166157899986664----20----68-059999836674023577789899709941561233124433200
Q gi|254780787|r 435 LDTPGHAAFYEMRARGA----RV----TD-IAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQ 500 (884)
Q Consensus 435 iDtPGh~~f~~~r~rg~----~~----~d-~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~ 500 (884)
|||.|...-..+...-. .+ -+ =..||+++.-. .+++..|..-...--.-=+.++|+|-......
T Consensus 305 IDTAGrS~rd~~~~~eL~~ll~~~~~~~~ie~~LVLSaTtk--~~dl~~ii~~f~~l~~~~lIfTKLDET~s~G~ 377 (432)
T PRK12724 305 IDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHHTLTVLKAYESLNYRRILLTKLDEADFLGS 377 (432)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC--HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCH
T ss_conf 92999897899999999999986366788517999978899--89999999984269998499971227798669
No 434
>KOG0393 consensus
Probab=91.94 E-value=0.12 Score=29.30 Aligned_cols=154 Identities=22% Similarity=0.309 Sum_probs=91.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEEC-CCC--EEEEEECCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 3898623685044677788642221001231000121499951-784--3888851661578999866642068059999
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAY-QGK--NITFLDTPGHAAFYEMRARGARVTDIAVLVL 461 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~-~~~--~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv 461 (884)
=|.|.|---.|||.||.....-.-.....=-..-+-.+ .+.. ++. .+.+-||-|.+.|-.+|.=.-.-+|+.++..
T Consensus 6 K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~-~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cf 84 (198)
T KOG0393 6 KCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSA-NVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCF 84 (198)
T ss_pred EEEEECCCCCCCEEEEEEECCCCCCCCCCCEEECCCEE-EEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 99998988767458898843576866545638756238-99964897899863314797301133636778888899998
Q ss_pred ECCCCCCHHHHHHHHH-----HHH--CCCCEEEECCCCCCCCCCCCHHHHHHH---------CCCCCCCCCCCCCEEEEE
Q ss_conf 8366740235777898-----997--099415612331244332000221000---------013200012347403631
Q gi|254780787|r 462 AADEEIMPQAIESINH-----AKA--ADVSIIVAINKIDKLGADPQKVRMSLL---------KHDVFVESMGGDILDVEI 525 (884)
Q Consensus 462 ~~~~g~~~qt~e~~~~-----~~~--~~~p~iva~nk~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 525 (884)
+++ .|++.+.+.. .+. -++|+|.+-+|.|+-. ++. ....+. +.+.......|-...+.+
T Consensus 85 sv~---~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~-d~~-~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393 85 SVV---SPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRD-DPS-TLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred ECC---CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHH-CHH-HHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 769---826688877510688996389998899821277653-878-899987465786567899999998595112320
Q ss_pred EECCCCCCCCCCCCHHCCC
Q ss_conf 1002477411221000023
Q gi|254780787|r 526 SAKNNLNLDKLLDAILLQA 544 (884)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~ 544 (884)
||++..|+.+-++.....+
T Consensus 160 Sa~tq~~v~~vF~~a~~~~ 178 (198)
T KOG0393 160 SALTQKGVKEVFDEAIRAA 178 (198)
T ss_pred HHHHHCCCHHHHHHHHHHH
T ss_conf 1756377188899999998
No 435
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=91.89 E-value=0.13 Score=28.99 Aligned_cols=13 Identities=15% Similarity=0.148 Sum_probs=8.2
Q ss_pred CCCEEEEEECCCCC
Q ss_conf 53038986236850
Q gi|254780787|r 382 RPPVVTIMGHVDHG 395 (884)
Q Consensus 382 R~pvv~v~ghvd~G 395 (884)
..|||. ..|=+++
T Consensus 459 ~CPvCg-~~l~~~~ 471 (908)
T COG0419 459 KCPVCG-QELPEEH 471 (908)
T ss_pred CCCCCC-CCCCCHH
T ss_conf 999888-9786077
No 436
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.82 E-value=0.84 Score=23.43 Aligned_cols=112 Identities=22% Similarity=0.253 Sum_probs=61.4
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHH------HH-----HCCCCCCEE------CCCEEEEEC--------------
Q ss_conf 12553038986236850446777886422------21-----001231000------121499951--------------
Q gi|254780787|r 379 LDIRPPVVTIMGHVDHGKTSLLDAIRKAD------VA-----KGEIGGITQ------HIGAYQVAY-------------- 427 (884)
Q Consensus 379 ~~~R~pvv~v~ghvd~GKt~lld~~r~~~------~~-----~~e~ggitq------~iga~~~~~-------------- 427 (884)
....|.||-+.|---.||||-+-+|=.-- |. -..+|++-| .+|.-.+..
T Consensus 71 ~~~~~~vI~lvG~~G~GKTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~eQLk~~a~~l~v~~~~~~~~~~~~~~~~~~~ 150 (270)
T PRK06731 71 FEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 150 (270)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHH
T ss_conf 67998189998889898899999999999867990899983888888999999999981995354588789999999999
Q ss_pred --CCCEEEEEECCCHHHH-----HHH-HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC--CEEEECCCCCC
Q ss_conf --7843888851661578-----999-8666420680599998366740235777898997099--41561233124
Q gi|254780787|r 428 --QGKNITFLDTPGHAAF-----YEM-RARGARVTDIAVLVLAADEEIMPQAIESINHAKAADV--SIIVAINKIDK 494 (884)
Q Consensus 428 --~~~~~~~iDtPGh~~f-----~~~-r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~--p~iva~nk~d~ 494 (884)
....+.+|||.|.... ..| ......-.|-.+||+|+.-|- -+..+.++.++. +--+.++|+|-
T Consensus 151 ~~~~~DvilIDTAGR~~~d~~lm~el~~~~~~~~p~~~~Lvldas~~~----~~~~~~~~~f~~~~i~gvIlTKlD~ 223 (270)
T PRK06731 151 EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS----KDMIEIITNFKDIHIDGIVFTKFDE 223 (270)
T ss_pred HHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCH----HHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 976999999979998714699999999986063898799998687776----9999999980779998899965358
No 437
>KOG0780 consensus
Probab=91.63 E-value=0.88 Score=23.29 Aligned_cols=113 Identities=27% Similarity=0.352 Sum_probs=71.4
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHH------HHH-----HCCCCCCEEC--------C---CEEE------------
Q ss_conf 1255303898623685044677788642------221-----0012310001--------2---1499------------
Q gi|254780787|r 379 LDIRPPVVTIMGHVDHGKTSLLDAIRKA------DVA-----KGEIGGITQH--------I---GAYQ------------ 424 (884)
Q Consensus 379 ~~~R~pvv~v~ghvd~GKt~lld~~r~~------~~~-----~~e~ggitq~--------i---ga~~------------ 424 (884)
-+.+|-||-+.|-=-.||||..-++-.. .+. -..||.+-|- | |+|.
T Consensus 97 ~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv 176 (483)
T KOG0780 97 KKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGV 176 (483)
T ss_pred CCCCCCEEEEEECCCCCCCEEHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHH
T ss_conf 56897089998305788630089999999846872457760224530689999876740770684036655589999999
Q ss_pred --EECCCCEEEEEECCCH-----HHHHHHHHHH-HHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EECCCCCC
Q ss_conf --9517843888851661-----5789998666-420680599998366740235777898997099415-61233124
Q gi|254780787|r 425 --VAYQGKNITFLDTPGH-----AAFYEMRARG-ARVTDIAVLVLAADEEIMPQAIESINHAKAADVSII-VAINKIDK 494 (884)
Q Consensus 425 --~~~~~~~~~~iDtPGh-----~~f~~~r~rg-~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~i-va~nk~d~ 494 (884)
|..++.-+.++||-|. +.|..|+.-- +---|.+|+|+|+.-| |..|.--.+.+..+-+- |-|+|+|=
T Consensus 177 ~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG---Qaae~Qa~aFk~~vdvg~vIlTKlDG 252 (483)
T KOG0780 177 DRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG---QAAEAQARAFKETVDVGAVILTKLDG 252 (483)
T ss_pred HHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC---HHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 98886397289982787301248999999999851598738999856200---76799999887761540379972256
No 438
>COG1162 Predicted GTPases [General function prediction only]
Probab=91.53 E-value=0.28 Score=26.70 Aligned_cols=86 Identities=20% Similarity=0.330 Sum_probs=49.1
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECC-------
Q ss_conf 6665410111122210123332210124100125530389862368504467778864222100123100012-------
Q gi|254780787|r 348 IIANEFGNTVKRVLESDIEVGIFDVADSESDLDIRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHI------- 420 (884)
Q Consensus 348 lva~E~g~ev~~~~~~~~~~~~~~~~~~~~~~~~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~i------- 420 (884)
.+....|+.+..++....+ . .+.-... +..-+.++|||---||+||+-+|.....+. -|-|..+.
T Consensus 135 ~~y~~~gy~v~~~s~~~~~-~---~~~l~~~--l~~~~svl~GqSGVGKSSLiN~L~p~~~~~--t~eIS~~~~rGkHTT 206 (301)
T COG1162 135 REYEDIGYPVLFVSAKNGD-G---LEELAEL--LAGKITVLLGQSGVGKSTLINALLPELNQK--TGEISEKLGRGRHTT 206 (301)
T ss_pred HHHHHCCEEEEEECCCCCC-C---HHHHHHH--HCCCEEEEECCCCCCHHHHHHHHCCHHHHH--HHHHCCCCCCCCCCC
T ss_conf 9998679359995376765-5---8999997--558849998888776999887417212113--442104478988763
Q ss_pred ---CEEEEECCCCEEEEEECCCHHHHH
Q ss_conf ---149995178438888516615789
Q gi|254780787|r 421 ---GAYQVAYQGKNITFLDTPGHAAFY 444 (884)
Q Consensus 421 ---ga~~~~~~~~~~~~iDtPGh~~f~ 444 (884)
-.|.++..+ .+|||||...|-
T Consensus 207 t~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 207 THVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred CEEEEEECCCCC---EEEECCCCCCCC
T ss_conf 248999838998---897289977147
No 439
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=91.53 E-value=0.82 Score=23.52 Aligned_cols=67 Identities=10% Similarity=0.127 Sum_probs=26.7
Q ss_pred EEEEEECCCCCCCHHHHHHH----------HHCCCEEEEECCCC---CHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHH
Q ss_conf 65788512685757788764----------32598799963899---989999999839859975026789999999996
Q gi|254780787|r 712 CLSIVHSSVGAINETDVSLA----------KASGAVIFGFNVRA---SSQARVLAIKDEIKILYYKIIYDLLDSIKDSMS 778 (884)
Q Consensus 712 ~i~v~~~~VG~v~~~DV~~A----------~~~~a~Il~FnVkv---~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~ 778 (884)
++.|+.+|.-|.|=.|+..- ...|=.|| ||..+ -.||.-++..-+..|+...-=+.-.+.++..++
T Consensus 608 ~ldvl~aG~~p~nP~elL~s~~~~~ll~~l~~~yD~II-iDtPPvl~v~Da~~l~~~~D~~l~Vvr~g~T~~~~~~~a~~ 686 (726)
T PRK09841 608 GFDVITRGQVPPNPSELLMRDRMRQLLEWANDHYDLVI-VDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQ 686 (726)
T ss_pred CEEEEECCCCCCCHHHHHCCHHHHHHHHHHHHCCCEEE-EECCCCCCCCHHHHHHHHCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 98998289999798999587699999999981399999-91999653415999999789599999799688999999999
Q ss_pred H
Q ss_conf 3
Q gi|254780787|r 779 E 779 (884)
Q Consensus 779 ~ 779 (884)
.
T Consensus 687 ~ 687 (726)
T PRK09841 687 R 687 (726)
T ss_pred H
T ss_conf 9
No 440
>PHA02518 ParA-like protein; Provisional
Probab=91.51 E-value=0.41 Score=25.55 Aligned_cols=65 Identities=15% Similarity=0.291 Sum_probs=40.6
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCC-C--CCHHHHHHHHHHHHCC--CC-EEEECCCCCCC
Q ss_conf 8438888516615789998666420680599998366-7--4023577789899709--94-15612331244
Q gi|254780787|r 429 GKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADE-E--IMPQAIESINHAKAAD--VS-IIVAINKIDKL 495 (884)
Q Consensus 429 ~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~-g--~~~qt~e~~~~~~~~~--~p-~iva~nk~d~~ 495 (884)
.+-+.||||||+. +.+....+..+|.+|+-+.... . -..++.+.|..++..+ .+ +.+.+|..+..
T Consensus 76 ~yD~viID~pp~~--~~~~~~al~aaD~vliP~~ps~~d~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~ 146 (211)
T PHA02518 76 GYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKN 146 (211)
T ss_pred CCCEEEECCCCCC--HHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC
T ss_conf 7888998899974--2999999995896999637868789999999999999998665675168886235866
No 441
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=91.51 E-value=0.52 Score=24.87 Aligned_cols=58 Identities=10% Similarity=0.167 Sum_probs=39.8
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH------HHHHHHHHHH------CCCCEEEECCCCCC
Q ss_conf 843888851661578999866642068059999836674023------5777898997------09941561233124
Q gi|254780787|r 429 GKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQ------AIESINHAKA------ADVSIIVAINKIDK 494 (884)
Q Consensus 429 ~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~~~q------t~e~~~~~~~------~~~p~iva~nk~d~ 494 (884)
+..+.|||||||.+- +...-.+.+|++|+ -++|. +...+.++.. ..+|+-|.+|.+--
T Consensus 83 ~~D~VIIDtpg~~s~--~~~~Ai~~ADLVLI------P~qPSp~D~~~a~~tv~~i~~~~~~~~~~ip~~vlltRv~a 152 (231)
T PRK13849 83 GFDYALADTHGGSSE--LNNTIIASSNLLLI------PTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVPV 152 (231)
T ss_pred CCCEEEECCCCCCCH--HHHHHHHHCCEEEE------CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCH
T ss_conf 998899818997758--99999997898997------79998667999999999999999972878865666540504
No 442
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.91 E-value=0.77 Score=23.72 Aligned_cols=142 Identities=18% Similarity=0.191 Sum_probs=76.1
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHH-HHHHCCCCCCEE---CCCEEE----------EEC-------------------CC
Q ss_conf 303898623685044677788642-221001231000---121499----------951-------------------78
Q gi|254780787|r 383 PPVVTIMGHVDHGKTSLLDAIRKA-DVAKGEIGGITQ---HIGAYQ----------VAY-------------------QG 429 (884)
Q Consensus 383 ~pvv~v~ghvd~GKt~lld~~r~~-~~~~~e~ggitq---~iga~~----------~~~-------------------~~ 429 (884)
.--|...|----||||-+-+|--. .......|=||- .|||.+ +|. ..
T Consensus 241 ~q~IALVGPTGVGKTTTIAKLAArf~~~~KkVALITtDTYRIGAVEQLKTYAeIMgVPV~VV~dp~eL~~AL~~lkdka~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCCC
T ss_conf 71799989999888999999999986169808999806634769999999999849943996888999999998763368
Q ss_pred CEEEEEECCCHHHHHHHH------HHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHH
Q ss_conf 438888516615789998------66642068059999836674023577789899709941561233124433200022
Q gi|254780787|r 430 KNITFLDTPGHAAFYEMR------ARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVR 503 (884)
Q Consensus 430 ~~~~~iDtPGh~~f~~~r------~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~ 503 (884)
..+-||||-|........ --+..-.|-.+||+++.-. ++....|......--+--+.++|+|-........+
T Consensus 321 ~DLILIDTAGRS~RD~~~I~EL~~~l~~~~p~ev~LVLSATTK--~~DL~eIi~rF~~l~idglIfTKLDET~SlG~ILN 398 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDIHIDGIVFTKFDETASSGELLK 398 (436)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCC--HHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHH
T ss_conf 8889992989884689999999999851277716999978899--89999999972579988289971325687037888
Q ss_pred HHHHCCCCCCCCCCCCCEEEEEEEC-CCCCCCCCCCC
Q ss_conf 1000013200012347403631100-24774112210
Q gi|254780787|r 504 MSLLKHDVFVESMGGDILDVEISAK-NNLNLDKLLDA 539 (884)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 539 (884)
-... ...|++-+ .|+++++-+..
T Consensus 399 v~~~-------------s~LPIsYvTdGQ~VPEDIev 422 (436)
T PRK11889 399 IPAV-------------SSAPIVLMTDGQDVKKNIHI 422 (436)
T ss_pred HHHH-------------HCCCEEEECCCCCCCCCHHH
T ss_conf 9988-------------39987997899858753000
No 443
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=90.81 E-value=1.1 Score=22.76 Aligned_cols=69 Identities=23% Similarity=0.348 Sum_probs=53.6
Q ss_pred EEEEEEEECCCCCC--------EEEEEEEEEEEECCCEEEEE------ECCEEEE---EEEEHHHHHCCHHHHHHHCCCE
Q ss_conf 99978873389870--------78999852178469807996------6998998---2262576644600668727976
Q gi|254780787|r 793 AEVLEVFAVTKLGN--------VAGCKVSEGKVERGSGVRLI------RNSTVIY---EGKLKTLKRFKDEVSEVHAGQD 855 (884)
Q Consensus 793 a~v~~vF~~~k~~~--------i~G~~V~~G~i~~~~~~~v~------r~~~~i~---~g~i~sl~~~k~~v~ev~~g~e 855 (884)
..|.--|.++|-|. |+|-.++.|+++.|..+-+- ++|+..| .-+|.||+-...+|+++.-|-=
T Consensus 8 m~V~RSFDvNkPGt~~~~L~GGViGGSl~~G~lkvgDeIEIrPG~~~~~~~~~~~~Pi~t~I~sl~a~~~~l~~a~PGGL 87 (113)
T cd03688 8 MIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAENNDLQEAVPGGL 87 (113)
T ss_pred EEEEEEEECCCCCCCHHHCCEEEEEEEEEEEEEECCCEEEECCCEEEEECCEEEEEEEEEEEEEEEECCEEEEEECCCCE
T ss_conf 99998864268999878853008989987879957999997489898739979999899999999929842428837857
Q ss_pred EEEEEE
Q ss_conf 699972
Q gi|254780787|r 856 CGMAFE 861 (884)
Q Consensus 856 cgi~~~ 861 (884)
|||.-.
T Consensus 88 igvgT~ 93 (113)
T cd03688 88 IGVGTK 93 (113)
T ss_pred EEECCC
T ss_conf 897166
No 444
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PMID:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=90.79 E-value=0.42 Score=25.52 Aligned_cols=66 Identities=15% Similarity=0.221 Sum_probs=42.3
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCC---CCCHHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 78438888516615789998666420680599998366---740235777898997099415612331244
Q gi|254780787|r 428 QGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADE---EIMPQAIESINHAKAADVSIIVAINKIDKL 495 (884)
Q Consensus 428 ~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~---g~~~qt~e~~~~~~~~~~p~iva~nk~d~~ 495 (884)
+..-+.|||||. .++.+-......+|.+|++|..+- -...|....+.........+-+++|++|.-
T Consensus 113 ~~~D~viiD~pp--~l~~~~~~al~aad~vlipv~~~~~s~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 113 AARDWVLIDLPR--GPSPITDQALAAADLVLVVVNADAACYATLHQLALALLARSVPPDGIHYLINQFQPA 181 (246)
T ss_pred CCCCEEEEECCC--CCCHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 679889994899--874999999998894799818998999999999999998427767517886302640
No 445
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=90.69 E-value=0.85 Score=23.42 Aligned_cols=53 Identities=25% Similarity=0.390 Sum_probs=32.0
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHH
Q ss_conf 30389862368504467778864222100123100012149995178438888516615789
Q gi|254780787|r 383 PPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFY 444 (884)
Q Consensus 383 ~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~ 444 (884)
+||+.|.|-=|.|||||+-+|..--.+.| + .+..+...... -=+|+||-.++-
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G----~----rVa~iKH~hh~-~~~D~~GkDs~r 54 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARG----Y----RVATVKHAHHD-FDLDKPGKDTYR 54 (161)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCC----C----EEEEEEECCCC-CCCCCCCCCCCH
T ss_conf 72899996279973428999999997579----3----79999865877-777889876610
No 446
>KOG4181 consensus
Probab=90.67 E-value=0.72 Score=23.91 Aligned_cols=78 Identities=26% Similarity=0.265 Sum_probs=45.2
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHH--------HH---HHCCC----CCCEECCCEEEEECCCCEEEEEECCCHHHHHHHH
Q ss_conf 303898623685044677788642--------22---10012----3100012149995178438888516615789998
Q gi|254780787|r 383 PPVVTIMGHVDHGKTSLLDAIRKA--------DV---AKGEI----GGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMR 447 (884)
Q Consensus 383 ~pvv~v~ghvd~GKt~lld~~r~~--------~~---~~~e~----ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r 447 (884)
--||.|||--.+||+|||.-|-.. .| ++-|| |.-|.+|..|.. ...+.|+||----+|+-|-
T Consensus 188 f~VIgvlG~QgsGKStllslLaans~~~dyr~yvFRpvS~Ea~E~~~~qt~~Id~~i~---q~~i~fldtqpl~sfsi~e 264 (491)
T KOG4181 188 FTVIGVLGGQGSGKSTLLSLLAANSLDYDYRQYVFRPVSPEADECIFAQTHKIDPNIG---QKSILFLDTQPLQSFSIRE 264 (491)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHCCCEECCCCCCC---CCEEEEECCCCCCCHHHHH
T ss_conf 1699740477754889999984268477667773035785566653032003365546---5227862464331268775
Q ss_pred H----------------------------HHHHCCCCEEEEEEC
Q ss_conf 6----------------------------664206805999983
Q gi|254780787|r 448 A----------------------------RGARVTDIAVLVLAA 463 (884)
Q Consensus 448 ~----------------------------rg~~~~d~~ilvv~~ 463 (884)
. ==.++|-++|+|+|-
T Consensus 265 ~~i~~d~p~~~~~~~d~~~~~~~sL~~~AfLl~VcHivivV~d~ 308 (491)
T KOG4181 265 RHILLDTPPLMPVGKDSDHQDLYSLGTMAFLLSVCHIVIVVIDG 308 (491)
T ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEECC
T ss_conf 34204788898889884178899999999999876178998421
No 447
>PRK10416 cell division protein FtsY; Provisional
Probab=90.47 E-value=1.1 Score=22.56 Aligned_cols=108 Identities=18% Similarity=0.244 Sum_probs=62.8
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCC-----------CCCCEE------CCCEEEEE------------------
Q ss_conf 5303898623685044677788642221001-----------231000------12149995------------------
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKADVAKGE-----------IGGITQ------HIGAYQVA------------------ 426 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e-----------~ggitq------~iga~~~~------------------ 426 (884)
.|-||-++|-=-.||||-+-+|-+--...|- |+.|-| .+|.-.+.
T Consensus 294 ~P~VIl~vGvNG~GKTTTigKLA~~~~~~gkkVllaA~DTfRaAAieQL~~w~~r~~v~vi~~~~g~Dpa~V~~dai~~a 373 (499)
T PRK10416 294 TPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 373 (499)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98799997478787898999999999977995378840667568999999984245736983689999799999999999
Q ss_pred -CCCCEEEEEECCCHHH-HHHHHH------HHH-----HCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC--C-EEEECC
Q ss_conf -1784388885166157-899986------664-----20680599998366740235777898997099--4-156123
Q gi|254780787|r 427 -YQGKNITFLDTPGHAA-FYEMRA------RGA-----RVTDIAVLVLAADEEIMPQAIESINHAKAADV--S-IIVAIN 490 (884)
Q Consensus 427 -~~~~~~~~iDtPGh~~-f~~~r~------rg~-----~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~--p-~iva~n 490 (884)
..+.-+.+|||-|--. =.+|+. |-. ..-+-.+||+|++-| -.+++.++.++- + --+.|+
T Consensus 374 ~~~~~DvviiDTAGRl~~~~~LM~EL~ki~rvi~k~~~~aP~e~lLVlDa~tG-----Qna~~qak~F~e~~~ltGiIlT 448 (499)
T PRK10416 374 KARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG-----QNAVSQAKLFHEAVGLTGITLT 448 (499)
T ss_pred HHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC-----HHHHHHHHHHHHCCCCCEEEEE
T ss_conf 97299989985776432609999999999999972378999748999778767-----7899999998442799759996
Q ss_pred CCCC
Q ss_conf 3124
Q gi|254780787|r 491 KIDK 494 (884)
Q Consensus 491 k~d~ 494 (884)
|+|-
T Consensus 449 KlDG 452 (499)
T PRK10416 449 KLDG 452 (499)
T ss_pred CCCC
T ss_conf 5677
No 448
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=90.35 E-value=0.54 Score=24.74 Aligned_cols=58 Identities=31% Similarity=0.501 Sum_probs=37.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHH-C--CCCCCE---ECCCEEE----------EE----------------CCC
Q ss_conf 53038986236850446777886422210-0--123100---0121499----------95----------------178
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKADVAK-G--EIGGIT---QHIGAYQ----------VA----------------YQG 429 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~~~~~-~--e~ggit---q~iga~~----------~~----------------~~~ 429 (884)
..=||+++|----||||.+-+|=-..+.. + -.|=|| ..|||.+ +| +..
T Consensus 193 ~~~vi~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyRigA~eQLk~ya~il~vp~~vv~~~~~l~~~l~~~~~ 272 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELAKALERLRD 272 (282)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHCCC
T ss_conf 67279997788875788999999999997389967999807776789999999999959748993999999999986579
Q ss_pred CEEEEEECCC
Q ss_conf 4388885166
Q gi|254780787|r 430 KNITFLDTPG 439 (884)
Q Consensus 430 ~~~~~iDtPG 439 (884)
..+.||||||
T Consensus 273 ~d~IlIDTaG 282 (282)
T TIGR03499 273 KDLILIDTAG 282 (282)
T ss_pred CCEEEEECCC
T ss_conf 8999981979
No 449
>KOG2655 consensus
Probab=90.21 E-value=0.55 Score=24.69 Aligned_cols=110 Identities=23% Similarity=0.398 Sum_probs=71.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHC-----CCCCC--EECCCEEEEECCC----CEEEEEECCCHHHHHHHH-------
Q ss_conf 89862368504467778864222100-----12310--0012149995178----438888516615789998-------
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKG-----EIGGI--TQHIGAYQVAYQG----KNITFLDTPGHAAFYEMR------- 447 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~-----e~ggi--tq~iga~~~~~~~----~~~~~iDtPGh~~f~~~r------- 447 (884)
+-|.|---.||||++-.|-.+.+... -..-+ |-.|-.+.+.... ..+|+|||||.-+|...-
T Consensus 24 lmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~pi~ 103 (366)
T KOG2655 24 LMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRPIV 103 (366)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCHHHH
T ss_conf 99855887638899988886532577666775567655311322323763797488767843699865446512432356
Q ss_pred -----------------HHHHHCCCC----EEEEEE-CCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf -----------------666420680----599998-36674023577789899709941561233124433
Q gi|254780787|r 448 -----------------ARGARVTDI----AVLVLA-ADEEIMPQAIESINHAKAADVSIIVAINKIDKLGA 497 (884)
Q Consensus 448 -----------------~rg~~~~d~----~ilvv~-~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~ 497 (884)
.| ....|- +++-|. --||+.|.-++.++.+- ..|.+|-+|-|-|....
T Consensus 104 ~yi~~q~~~yl~~E~~~~R-~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~-~~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655 104 NYIDSQFDQYLDEESRLNR-SKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLS-KKVNLIPVIAKADTLTK 173 (366)
T ss_pred HHHHHHHHHHHHHHCCCCC-CCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHH-CCCCCCCEEECCCCCCH
T ss_conf 7899999999860236886-5566884489999837888888686699999773-25661031640566898
No 450
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=90.20 E-value=0.25 Score=26.99 Aligned_cols=84 Identities=20% Similarity=0.278 Sum_probs=61.8
Q ss_pred EEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHH-CCHHHHHHHCCCEEEEEEECCEEE-EEC
Q ss_conf 899978873389870789998521784698079966998998226257664-460066872797669997284110-058
Q gi|254780787|r 792 NAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKR-FKDEVSEVHAGQDCGMAFEKYDNI-QAG 869 (884)
Q Consensus 792 ~a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~-~k~~v~ev~~g~ecgi~~~~~~~~-~~g 869 (884)
.+.|+..-.-...|.++=+.|.+|+|+.|..+ +=+.. .|+|.+|.+ ..+.++++.-++.+ .+-+|++. ..|
T Consensus 2 ~g~ViEs~~d~g~G~vatviV~~GtL~~Gd~i--v~G~~---~gkVr~~~d~~g~~v~~a~Ps~pV--~i~G~~~~P~aG 74 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVI--VAGGT---YGKIRTMVDENGKALLEAGPSTPV--EILGLKDVPKAG 74 (95)
T ss_pred EEEEEEEEECCCCCCEEEEEEECCCCCCCCEE--EECCC---EEEEEEEECCCCCCCCEECCCCCE--EEECCCCCCCCC
T ss_conf 49999999769988379999934865559999--97987---878999999999999888699849--995778999999
Q ss_pred CEEEEEEEEEEEE
Q ss_conf 9899988999851
Q gi|254780787|r 870 DMIECFSIEHIKR 882 (884)
Q Consensus 870 D~i~~~~~~~~~~ 882 (884)
|.+..+.-+..++
T Consensus 75 d~~~~v~~e~~a~ 87 (95)
T cd03701 75 DGVLVVASEKEAK 87 (95)
T ss_pred CEEEEECCHHHHH
T ss_conf 9999979999999
No 451
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=90.07 E-value=0.24 Score=27.20 Aligned_cols=23 Identities=48% Similarity=0.691 Sum_probs=20.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 53038986236850446777886
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIR 404 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r 404 (884)
--||+.|-|.=.+||||||++|+
T Consensus 27 ~k~i~li~G~NG~GKTTll~Ai~ 49 (650)
T TIGR03185 27 PKPIILIGGLNGAGKTTLLDAIQ 49 (650)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 99879997799997899999999
No 452
>KOG2484 consensus
Probab=90.06 E-value=0.47 Score=25.14 Aligned_cols=60 Identities=23% Similarity=0.366 Sum_probs=40.3
Q ss_pred EECCCH-HHHHHHHHHHHHCCCCEEEEEECCCCCC---HHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 851661-5789998666420680599998366740---235777898997099415612331244
Q gi|254780787|r 435 LDTPGH-AAFYEMRARGARVTDIAVLVLAADEEIM---PQAIESINHAKAADVSIIVAINKIDKL 495 (884)
Q Consensus 435 iDtPGh-~~f~~~r~rg~~~~d~~ilvv~~~~g~~---~qt~e~~~~~~~~~~p~iva~nk~d~~ 495 (884)
+|-++| .+|-..-.+-...+|.+|-|+||-|-+- +|-.+.+ +.-.-+-..|.+|||+|+.
T Consensus 127 ~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V-~~~~gnKkLILVLNK~DLV 190 (435)
T KOG2484 127 LDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAV-LQAHGNKKLILVLNKIDLV 190 (435)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCHHHHHHH-HHCCCCCEEEEEEEHHCCC
T ss_conf 056566899999999998651057886305588777775699999-7456872499995021048
No 453
>KOG0096 consensus
Probab=90.03 E-value=1.2 Score=22.32 Aligned_cols=142 Identities=15% Similarity=0.166 Sum_probs=82.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHH-HHHHCCCCCCEECCCEEEE----ECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 3898623685044677788642-2210012310001214999----5178438888516615789998666420680599
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKA-DVAKGEIGGITQHIGAYQV----AYQGKNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~-~~~~~e~ggitq~iga~~~----~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
..|+.|-+-+||||..-..+.. --..+.+ |-....+.. ....+++..-||-|.|-|.-+|..+---..-||+
T Consensus 12 klvlvGdgg~gKtt~vkr~ltgeFe~~y~a---t~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096 12 KLVLVGDGGTGKTTFVKRHLTGEFEKTYPA---TLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred EEEEECCCCCCCCCHHHHHHCCCCEECCCC---CCEEEEEEEEEECCCCCEEEEEEECCCCEEECCCCCCCEEECCEEEE
T ss_conf 999834786444531343530321021367---51037765455045684788863044421232324452770214688
Q ss_pred EEECCCCCCHHHHHHH--HHHHH-CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 9983667402357778--98997-09941561233124433200022100001320001234740363110024774112
Q gi|254780787|r 460 VLAADEEIMPQAIESI--NHAKA-ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKL 536 (884)
Q Consensus 460 vv~~~~g~~~qt~e~~--~~~~~-~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (884)
..|..--+..+-.-.| .+++. .++|+++.-||+|...-- +... . ..-....+...+.+|+.+.-|-+..
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~---~k~k---~--v~~~~kknl~y~~~Saksn~NfekP 160 (216)
T KOG0096 89 MFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARK---VKAK---P--VSFHRKKNLQYYEISAKSNYNFERP 160 (216)
T ss_pred EEEEEHHHHHHCCHHHHHHHHHHHCCCCEEEECCCEECCCCC---CCCC---C--CEEEECCCCEEEEEECCCCCCCCCC
T ss_conf 861001455622217899999986278704544501215510---1354---3--0145215514577401025564540
Q ss_pred C
Q ss_conf 2
Q gi|254780787|r 537 L 537 (884)
Q Consensus 537 ~ 537 (884)
+
T Consensus 161 F 161 (216)
T KOG0096 161 F 161 (216)
T ss_pred H
T ss_conf 6
No 454
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=89.86 E-value=0.68 Score=24.07 Aligned_cols=59 Identities=24% Similarity=0.337 Sum_probs=37.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCC----CCEECCCEEEEEC---CCCEEEEEECCCHHHH
Q ss_conf 0389862368504467778864222100123----1000121499951---7843888851661578
Q gi|254780787|r 384 PVVTIMGHVDHGKTSLLDAIRKADVAKGEIG----GITQHIGAYQVAY---QGKNITFLDTPGHAAF 443 (884)
Q Consensus 384 pvv~v~ghvd~GKt~lld~~r~~~~~~~e~g----gitq~iga~~~~~---~~~~~~~iDtPGh~~f 443 (884)
-||+|+|---+||++||-.|-++.-. .+-| .-|.-|=....|. .+..+.++||-|-.+-
T Consensus 8 ~vvsv~G~~rtGKS~LlN~l~~~~~~-F~~~~~~~~~T~Giw~~~~p~~~~~~~~~~llDtEG~~~~ 73 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSG-FDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGR 73 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCC
T ss_conf 99998768989889999999488889-8747887765650699835635788733899834777761
No 455
>KOG2423 consensus
Probab=89.83 E-value=0.1 Score=29.70 Aligned_cols=54 Identities=19% Similarity=0.217 Sum_probs=31.5
Q ss_pred HHCCCCEEEEEECCCCC--CHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHH
Q ss_conf 42068059999836674--0235777898997099415612331244332000221
Q gi|254780787|r 451 ARVTDIAVLVLAADEEI--MPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRM 504 (884)
Q Consensus 451 ~~~~d~~ilvv~~~~g~--~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~ 504 (884)
.-.+|.+|-|+||-|.+ +.-++|...--..-.--.|.+|||+|+.-.|.....-
T Consensus 211 iDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv 266 (572)
T KOG2423 211 IDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWV 266 (572)
T ss_pred HCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHH
T ss_conf 03220368852156876654178999986328752168885135500188899999
No 456
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains; InterPro: IPR005690 Two integral outer envelope GTPases, Toc34 and Toc86, are proposed to regulate the recognition and translocation of nuclear-encoded preproteins during the early stages of protein import into chloroplasts. The long precursor of the 86K protein is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation . The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0009707 chloroplast outer membrane.
Probab=89.50 E-value=0.45 Score=25.27 Aligned_cols=95 Identities=16% Similarity=0.229 Sum_probs=60.7
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCC-CCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 53038986236850446777886422210012-31000121499951784388885166157899986664206805999
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKADVAKGEI-GGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~-ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
=+--|-|||----||+.-+-.|-......-.| |--|..+--..=-.++.+|+||||||-.+=..--+..
T Consensus 123 FSl~IlVLGK~GVGKSATINSI~~e~~~s~dAf~~~T~~V~~i~G~V~Gv~i~viDTPGL~~s~~dQs~N---------- 192 (772)
T TIGR00993 123 FSLNILVLGKSGVGKSATINSIFGEVKASIDAFGLGTTSVQEIEGLVDGVKIRVIDTPGLKSSASDQSKN---------- 192 (772)
T ss_pred HEEEEEEECCCCCCCCHHHHHHHCCEEEEEECCCCCCCEEEEEEEEEEEEEEEEEECCCCCHHHHHHHHC----------
T ss_conf 0114345515687720101111235001201014666447766667710799997578875555433302----------
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCE-EEECCCCCC
Q ss_conf 9836674023577789899709941-561233124
Q gi|254780787|r 461 LAADEEIMPQAIESINHAKAADVSI-IVAINKIDK 494 (884)
Q Consensus 461 v~~~~g~~~qt~e~~~~~~~~~~p~-iva~nk~d~ 494 (884)
..-..+++-+-+.+=|- |.-+..+|.
T Consensus 193 --------~K~L~sVK~~~KK~PPDIVLY~DRLD~ 219 (772)
T TIGR00993 193 --------EKILSSVKKLIKKNPPDIVLYVDRLDL 219 (772)
T ss_pred --------HHHHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf --------068888888631796966986002233
No 457
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=89.09 E-value=1.1 Score=22.67 Aligned_cols=61 Identities=11% Similarity=0.194 Sum_probs=32.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 388885166157899986664206805999983667402357778989970994156123312
Q gi|254780787|r 431 NITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKID 493 (884)
Q Consensus 431 ~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d 493 (884)
.+.+||||---.-.-+.+ ..-+|.||||.--.--=---..-.+.++..+++|+.|++||-+
T Consensus 165 ~~~IIDsaaG~gCpVi~s--l~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~ 225 (284)
T COG1149 165 DLLIIDSAAGTGCPVIAS--LKGADLAILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYN 225 (284)
T ss_pred CEEEEECCCCCCCHHHHH--HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 125885799789717776--4168779998168852366899999999983995499996677
No 458
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=88.69 E-value=0.36 Score=25.96 Aligned_cols=32 Identities=25% Similarity=0.585 Sum_probs=26.1
Q ss_pred CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 24100125530389862368504467778864
Q gi|254780787|r 374 DSESDLDIRPPVVTIMGHVDHGKTSLLDAIRK 405 (884)
Q Consensus 374 ~~~~~~~~R~pvv~v~ghvd~GKt~lld~~r~ 405 (884)
.+.+....-.+|++|+|+--.||||||.+|..
T Consensus 13 ~~~~~i~f~~~itaivG~NGaGKSTLl~~i~~ 44 (204)
T cd03240 13 HERSEIEFFSPLTLIVGQNGAGKTTIIEALKY 44 (204)
T ss_pred CCCCEEEEECCEEEEECCCCCCHHHHHHHHHH
T ss_conf 77735885088899998999999999999863
No 459
>pfam01268 FTHFS Formate--tetrahydrofolate ligase.
Probab=88.52 E-value=0.36 Score=25.99 Aligned_cols=33 Identities=15% Similarity=0.095 Sum_probs=16.0
Q ss_pred EEEEEEEEEEEECCCCCCE------EEEEEEEEEEECCCEE
Q ss_conf 8878999788733898707------8999852178469807
Q gi|254780787|r 789 FLGNAEVLEVFAVTKLGNV------AGCKVSEGKVERGSGV 823 (884)
Q Consensus 789 ~~g~a~v~~vF~~~k~~~i------~G~~V~~G~i~~~~~~ 823 (884)
.+|.|+-.+-|. .+|+. .=..|.+=++..|+.+
T Consensus 482 PVCmAKTqySfS--~Dp~l~GaP~gf~l~VrevrlsaGAGF 520 (555)
T pfam01268 482 PVCMAKTQYSLS--DDPKLKGAPTGFTLPVREVRLSAGAGF 520 (555)
T ss_pred CEEEECCCCCCC--CCHHHHCCCCCCEEEEEEEEECCCCCE
T ss_conf 867872777757--793542999998688438998688856
No 460
>TIGR01007 eps_fam capsular exopolysaccharide family; InterPro: IPR005702 This family describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis (EPS). At least 13 genes EpsA to EpsM in streptococcus species seem to direct the EPS proteins and share high homology. ; GO: 0030234 enzyme regulator activity, 0045227 capsule polysaccharide biosynthetic process.
Probab=88.29 E-value=0.83 Score=23.47 Aligned_cols=109 Identities=22% Similarity=0.208 Sum_probs=74.5
Q ss_pred CCCCEEEEEEC----------CCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECC-------------------CCE
Q ss_conf 55303898623----------6850446777886422210012310001214999517-------------------843
Q gi|254780787|r 381 IRPPVVTIMGH----------VDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQ-------------------GKN 431 (884)
Q Consensus 381 ~R~pvv~v~gh----------vd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~-------------------~~~ 431 (884)
.|.||+...=. .=-|+|+|-|.|..|++.+.= .=|-|=.+|.. -.-
T Consensus 58 ~R~sv~~~~Fk~~n~~~GLtn~L~g~~dl~~~i~~T~isenL-----~vi~sG~vPPNPt~LL~s~~F~~l~e~~~~~fD 132 (207)
T TIGR01007 58 MRNSVMSGTFKSQNKIKGLTNFLSGNTDLSDAICETNISENL-----DVITSGPVPPNPTELLQSSNFKTLIETLRKYFD 132 (207)
T ss_pred CCCCCEEEEECCCCCCCCCHHHHCCCCCHHHHHHCCCCCCCC-----EEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 586603678658887656333221454533342026546787-----275178878775478888999999999871688
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEECCCCCCC
Q ss_conf 88885166157899986664206805999983667402357778989970994-15612331244
Q gi|254780787|r 432 ITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVS-IIVAINKIDKL 495 (884)
Q Consensus 432 ~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p-~iva~nk~d~~ 495 (884)
+-+||||==..|+-=- -=++.||-.||||+|.+-=...-.=+=.++.+.|-. .-|+|||+|..
T Consensus 133 ~iiiDTPPig~V~DAa-i~a~~~d~~~LV~~A~~~~k~~v~KAK~~LEq~G~~~LGvvLNK~d~s 196 (207)
T TIGR01007 133 YIIIDTPPIGTVIDAA-IIARAVDASILVTDAGKIKKREVKKAKEQLEQAGSKFLGVVLNKVDIS 196 (207)
T ss_pred EEEEEECCCCHHHHHH-HHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 8999518866678899-999872977988722532646789999999861784115888882576
No 461
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=88.11 E-value=1.7 Score=21.42 Aligned_cols=28 Identities=18% Similarity=0.468 Sum_probs=21.9
Q ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 0125530389862368504467778864
Q gi|254780787|r 378 DLDIRPPVVTIMGHVDHGKTSLLDAIRK 405 (884)
Q Consensus 378 ~~~~R~pvv~v~ghvd~GKt~lld~~r~ 405 (884)
....+|-||-++|-=-.||||-.-+|-+
T Consensus 92 ~~~~kP~Vim~vGlqGsGKTTT~aKLA~ 119 (433)
T PRK00771 92 EILLKPQTILLVGLQGSGKTTTAAKLAR 119 (433)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 5668985899973788978999999999
No 462
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=88.04 E-value=0.42 Score=25.53 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.4
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 530389862368504467778864
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRK 405 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~ 405 (884)
..+++.|.|.--+|||||||+|.-
T Consensus 27 ~~~lflI~G~nGsGKSTIlDAI~~ 50 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILDAITY 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 788899988999978899999999
No 463
>pfam06858 NOG1 Nucleolar GTP-binding protein 1 (NOG1). This family represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). In S. cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. Family members include eukaryotic, bacterial and archaeal proteins.
Probab=87.52 E-value=0.96 Score=23.05 Aligned_cols=42 Identities=26% Similarity=0.417 Sum_probs=28.7
Q ss_pred HHCCCCEEEEEECCCC----CCHHHHHHHHHHHHC--CCCEEEECCCCC
Q ss_conf 4206805999983667----402357778989970--994156123312
Q gi|254780787|r 451 ARVTDIAVLVLAADEE----IMPQAIESINHAKAA--DVSIIVAINKID 493 (884)
Q Consensus 451 ~~~~d~~ilvv~~~~g----~~~qt~e~~~~~~~~--~~p~iva~nk~d 493 (884)
..+.|.++.++|+-+- ++.|- .-..-.+.. +.|+|+++||+|
T Consensus 11 ~hL~~~vlf~~D~Se~cgysie~Q~-~L~~eik~~f~~~p~i~V~nK~D 58 (58)
T pfam06858 11 AHLRAAVLFVFDPSEQCGYSLEEQL-HLFKEIKPLFKNKPVIVVLNKID 58 (58)
T ss_pred HHCCCEEEEEECCCCCCCCCHHHHH-HHHHHHHHHCCCCEEEEEEECCC
T ss_conf 8367708999818976698999999-99999998749981899972679
No 464
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=87.30 E-value=0.54 Score=24.77 Aligned_cols=38 Identities=5% Similarity=-0.169 Sum_probs=19.2
Q ss_pred EEEEEEEEEEEEECC--CC--CCEEEEEEEEEEEECCCEEEE
Q ss_conf 888789997887338--98--707899985217846980799
Q gi|254780787|r 788 TFLGNAEVLEVFAVT--KL--GNVAGCKVSEGKVERGSGVRL 825 (884)
Q Consensus 788 ~~~g~a~v~~vF~~~--k~--~~i~G~~V~~G~i~~~~~~~v 825 (884)
-.+|.|+-.+-|.-. .. |.=.-..|.+=++..|+.+-|
T Consensus 512 lPVCmAKTqySfS~Dp~l~GaP~gf~l~VrevrlsaGAGFiV 553 (587)
T PRK13507 512 FATCMVKTHLSLSHDPALKGVPKGWTLPIRDILTYMGAGFVV 553 (587)
T ss_pred CCEEEECCCCCCCCCHHHHCCCCCCEEEEEEEEECCCCCEEE
T ss_conf 877787478775779153199999868740799878886698
No 465
>KOG3905 consensus
Probab=86.69 E-value=2 Score=20.88 Aligned_cols=77 Identities=19% Similarity=0.318 Sum_probs=44.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEE--EE------CCCCEEEEEE-CCCHHHHHHHHHHHHHCC
Q ss_conf 03898623685044677788642221001231000121499--95------1784388885-166157899986664206
Q gi|254780787|r 384 PVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQ--VA------YQGKNITFLD-TPGHAAFYEMRARGARVT 454 (884)
Q Consensus 384 pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~--~~------~~~~~~~~iD-tPGh~~f~~~r~rg~~~~ 454 (884)
--|-|+|.=-.|||||+-+|.+..-...-. | ++-.+ |. .....+-++| -|+|..+...--..-+++
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e~~Kkgs-g----LeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a 127 (473)
T KOG3905 53 KNVLVLGDNGSGKTSLISKLQGSETVKKGS-G----LEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA 127 (473)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCC-C----CCEEEEECCCCCCHHHHHCCEEEECCCHHHHHHHHHCCCCCCCC
T ss_conf 748997368886058888751565567787-7----50589862442300233066488658566655776405666734
Q ss_pred C-CEEEEEECCC
Q ss_conf 8-0599998366
Q gi|254780787|r 455 D-IAVLVLAADE 465 (884)
Q Consensus 455 d-~~ilvv~~~~ 465 (884)
+ ++||++|...
T Consensus 128 etlviltasms~ 139 (473)
T KOG3905 128 ETLVILTASMSN 139 (473)
T ss_pred CEEEEEEEECCC
T ss_conf 328999974588
No 466
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=86.44 E-value=2 Score=20.80 Aligned_cols=116 Identities=18% Similarity=0.199 Sum_probs=72.0
Q ss_pred CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEE-------CCCEEEEE-CCC---C--------------
Q ss_conf 1001255303898623685044677788642221001231000-------12149995-178---4--------------
Q gi|254780787|r 376 ESDLDIRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQ-------HIGAYQVA-YQG---K-------------- 430 (884)
Q Consensus 376 ~~~~~~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq-------~iga~~~~-~~~---~-------------- 430 (884)
-+-...+-=+|.|+||=-.||||||.-|-+.--.. .|-|+. .+|+-..+ ..+ .
T Consensus 43 VSFeV~kGE~vGIIG~NGAGKSTLLKiIaGI~~PT--sG~V~V~Gk~sLL~lgaGf~~eLTGrENI~L~g~~lGlsk~eI 120 (549)
T PRK13545 43 ISFEVPEGEIVGIVGLNGSGKSTLSNLIAGVTMPN--KGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGITKEKI 120 (549)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC--CEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCHHHH
T ss_conf 25786489899998899998999999996898898--6089994689877405576977629999998899849899999
Q ss_pred ------------EEEEEECCCHHHHHHHHHHH----HHCCCCEEEEEEC-----CCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf ------------38888516615789998666----4206805999983-----66740235777898997099415612
Q gi|254780787|r 431 ------------NITFLDTPGHAAFYEMRARG----ARVTDIAVLVLAA-----DEEIMPQAIESINHAKAADVSIIVAI 489 (884)
Q Consensus 431 ------------~~~~iDtPGh~~f~~~r~rg----~~~~d~~ilvv~~-----~~g~~~qt~e~~~~~~~~~~p~iva~ 489 (884)
.-.|||.|=.--=+-|+.|= +...|.=||+||= |..++.-..+-|.-++..+.-++++=
T Consensus 121 ~~~~deIiEFAELGdFid~PVKtYSSGMkaRLgFAIA~~~dPDILIIDEaLSVGD~~F~~Kc~~rm~ef~e~gkTIvfVS 200 (549)
T PRK13545 121 KEIIPEIIDFADIGKFMYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFIS 200 (549)
T ss_pred HHHHHHHHHHHCHHHHHHCHHHHHCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 99899999985678887382634088689999999998249999999462005789999999999999997898899995
Q ss_pred CCCC
Q ss_conf 3312
Q gi|254780787|r 490 NKID 493 (884)
Q Consensus 490 nk~d 493 (884)
--+.
T Consensus 201 Hsl~ 204 (549)
T PRK13545 201 HSLS 204 (549)
T ss_pred CCHH
T ss_conf 8889
No 467
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=86.37 E-value=2.1 Score=20.77 Aligned_cols=63 Identities=14% Similarity=0.209 Sum_probs=46.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEE---EECCCCCCC
Q ss_conf 38888516615789998666420680599998366740235777898997099415---612331244
Q gi|254780787|r 431 NITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSII---VAINKIDKL 495 (884)
Q Consensus 431 ~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~i---va~nk~d~~ 495 (884)
-+.|||||+--.+..+..-.++ |.+|+|....--=--.+.-.++++...+.+.. +++|+++-.
T Consensus 114 D~iliD~~aGl~~~~~~~~~~s--d~~viVt~pe~~si~~A~~~i~~~~~~~~~~~~~~vV~N~v~~~ 179 (262)
T COG0455 114 DYILIDTGAGLSRDTLSFILSS--DELVIVTTPEPTSITDAYKTIKILSKLGLDLLGRRVVLNRVRST 179 (262)
T ss_pred CEEEEECCCCCCHHHHHHHHHC--CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
T ss_conf 9999968999668889998736--81799927985208999999999997387643315899703666
No 468
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=86.23 E-value=0.56 Score=24.63 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=7.5
Q ss_pred CCCEEEEEECCCCCH
Q ss_conf 530389862368504
Q gi|254780787|r 382 RPPVVTIMGHVDHGK 396 (884)
Q Consensus 382 R~pvv~v~ghvd~GK 396 (884)
-.||| |-++|-.
T Consensus 505 pCPVC---GS~~HP~ 516 (1047)
T PRK10246 505 PCPLC---GSTSHPA 516 (1047)
T ss_pred CCCCC---CCCCCCC
T ss_conf 89999---9978996
No 469
>PTZ00258 GTP-binding protein; Provisional
Probab=86.20 E-value=1.2 Score=22.46 Aligned_cols=55 Identities=20% Similarity=0.325 Sum_probs=40.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHC--CCCCCEECCCEEEEECCC---------------CEEEEEECCC
Q ss_conf 389862368504467778864222100--123100012149995178---------------4388885166
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADVAKG--EIGGITQHIGAYQVAYQG---------------KNITFLDTPG 439 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~~~~--e~ggitq~iga~~~~~~~---------------~~~~~iDtPG 439 (884)
=|-|.|-=+.|||||+-+|..+++... -...|--++|...+|-+. ..+.|+|.+|
T Consensus 24 ~iGivGlPNvGKSTlFnAlT~~~v~~aNyPF~TIepN~gvv~VpD~Rl~~l~~~~~~kk~ipa~ve~vDIAG 95 (392)
T PTZ00258 24 KMGIVGLPNVGKSTTFNALSKQQVPAENFPFCTIDPNTARVPVPDERFDKLCQFFKPKSIVPATLDIVDIAG 95 (392)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEEEEECCC
T ss_conf 567866999978999999877997424899888778327996784568899875187761014689997345
No 470
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=85.94 E-value=2.2 Score=20.63 Aligned_cols=94 Identities=19% Similarity=0.211 Sum_probs=55.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHH-HHHHHHCCCCEEEEEEC
Q ss_conf 38986236850446777886422210012310001214999517843888851661578999-86664206805999983
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEM-RARGARVTDIAVLVLAA 463 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~-r~rg~~~~d~~ilvv~~ 463 (884)
++.+-|.=..||||+.-.|-..-.. .|.-+--|. .+.++||||......+ ..-....+|.+++++..
T Consensus 1 ~i~~~~~kGvGKTT~a~~La~~la~---~g~~Vl~vD---------d~iiiD~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 68 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK---RGKRVLLID---------DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH---CCCEEEEEC---------CCEEECCCCCCCHHHHHHHHHHHHCCEEEEECCC
T ss_conf 9898589977689999999999998---899699986---------7178858998884689999878758958996598
Q ss_pred CCCCCHHHHHH----HHHHHHCCCCEEEECC
Q ss_conf 66740235777----8989970994156123
Q gi|254780787|r 464 DEEIMPQAIES----INHAKAADVSIIVAIN 490 (884)
Q Consensus 464 ~~g~~~qt~e~----~~~~~~~~~p~iva~n 490 (884)
...-...+... .........+..+.+|
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~n 99 (99)
T cd01983 69 EALAVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 4889999999999999841069815788539
No 471
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=85.79 E-value=2.2 Score=20.58 Aligned_cols=61 Identities=15% Similarity=0.187 Sum_probs=49.6
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEECCC
Q ss_conf 4388885166157899986664206805999983667402357778989970994-1561233
Q gi|254780787|r 430 KNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVS-IIVAINK 491 (884)
Q Consensus 430 ~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p-~iva~nk 491 (884)
+-+.+||||=--.++--.. -+..||.++||+-.+.--...-.+++..++..+++ .-+++||
T Consensus 213 yD~IIiDTPPvl~~sDA~i-la~~aDg~LlVvR~~~T~~~~l~~a~~~L~~~g~~VlGvVLNq 274 (274)
T TIGR03029 213 YDVVIVDTPSAEHSSDAQI-VATRARGTLIVSRVNETRLHELTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred CCEEEEECCCCCCCCHHHH-HHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 9999993898655434999-9986897999996898889999999999997799668998487
No 472
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=85.59 E-value=0.58 Score=24.54 Aligned_cols=34 Identities=18% Similarity=-0.000 Sum_probs=17.1
Q ss_pred EEEEEEEEEEEECCCCCC------EEEEEEEEEEEECCCEEE
Q ss_conf 887899978873389870------789998521784698079
Q gi|254780787|r 789 FLGNAEVLEVFAVTKLGN------VAGCKVSEGKVERGSGVR 824 (884)
Q Consensus 789 ~~g~a~v~~vF~~~k~~~------i~G~~V~~G~i~~~~~~~ 824 (884)
.+|.|+-.+-|.- +++ =.=..|.+=++..|+.+-
T Consensus 483 PVCmAKTqySfS~--Dp~l~GaP~gf~l~IrevrlsaGAGFi 522 (556)
T PRK13505 483 PVCMAKTQYSFSD--DPKLLGAPTGFTITVRELRPSAGAGFI 522 (556)
T ss_pred CEEEECCCCCCCC--CHHHHCCCCCCEEEEEEEEECCCCCEE
T ss_conf 8678727877577--945419999986884279986888569
No 473
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=85.59 E-value=0.93 Score=23.14 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=8.3
Q ss_pred HHHHHHHCCCCEEEEC
Q ss_conf 7898997099415612
Q gi|254780787|r 474 SINHAKAADVSIIVAI 489 (884)
Q Consensus 474 ~~~~~~~~~~p~iva~ 489 (884)
+|..+-..+||+|.+|
T Consensus 128 ~l~~m~~l~VPiIsvI 143 (256)
T PRK12319 128 NLMEMSDLKVPIIAII 143 (256)
T ss_pred HHHHHHCCCCCEEEEE
T ss_conf 9999976999879999
No 474
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=85.39 E-value=0.58 Score=24.54 Aligned_cols=94 Identities=27% Similarity=0.329 Sum_probs=47.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHC-C----------CCCCEEC-----------CCEEEEE--CCCCEEEEEECCCH
Q ss_conf 389862368504467778864222100-1----------2310001-----------2149995--17843888851661
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADVAKG-E----------IGGITQH-----------IGAYQVA--YQGKNITFLDTPGH 440 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~~~~-e----------~ggitq~-----------iga~~~~--~~~~~~~~iDtPGh 440 (884)
|+.|.|-=|.|||||+-+|=..--+.| . +..++.+ =||-.+- .......+--|+||
T Consensus 1 v~~i~G~k~SGKTtL~~~l~~~L~~~Gy~V~~IKH~ghG~H~~~~d~~GkDs~rhr~AGA~~v~~~~~~~~~~~~~~~g~ 80 (165)
T TIGR00176 1 VLQIVGYKNSGKTTLIERLVKALKARGYRVATIKHDGHGHHDFDIDKEGKDSYRHREAGADAVIVASSERYAVMTETQGE 80 (165)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEECCCCCCCHHHHHCCCCEEEEECCCEEEEEEECCCC
T ss_conf 93789625886789999999999707995089860898887565279987313321043627886679068998752899
Q ss_pred HH--HHHHHHHHHH-CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE-CCCCCC
Q ss_conf 57--8999866642-068059999836674023577789899709941561-233124
Q gi|254780787|r 441 AA--FYEMRARGAR-VTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVA-INKIDK 494 (884)
Q Consensus 441 ~~--f~~~r~rg~~-~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva-~nk~d~ 494 (884)
+. |..+-.+-.- -+||++. +| .|...+|-|++ -|.+..
T Consensus 81 ~e~~L~~~l~~~~~~~~D~~Lv-----EG-----------fK~~~~pKi~~~r~~~~~ 122 (165)
T TIGR00176 81 EELDLEALLKRLADRELDIILV-----EG-----------FKDSPLPKIVVIRNEAEE 122 (165)
T ss_pred CCCCHHHHHHHCCCCCCCEEEE-----EC-----------CCCCCCCEEEEEECCCCC
T ss_conf 9878799986428552687898-----52-----------455788748997267556
No 475
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=85.19 E-value=2 Score=20.90 Aligned_cols=62 Identities=15% Similarity=0.236 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECC-CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 50446777886422210012310001214999517-8438888516615789998666420680599998366
Q gi|254780787|r 394 HGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQ-GKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADE 465 (884)
Q Consensus 394 ~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~-~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~ 465 (884)
.||||+--.|-..-...|. ...-+..+ ...+.|||||++.+-... ....++|.+|+.+...-
T Consensus 11 vGKtt~~~~la~~~a~~g~--------~vl~iD~DpQyD~iiIDtpp~~~~~~~--~al~~aD~viiP~~p~~ 73 (104)
T cd02042 11 VGKTTTAVNLAAALARRGK--------RVLLIDLDPQYDYIIIDTPPSLGLLTR--NALAAADLVLIPVQPSP 73 (104)
T ss_pred CCHHHHHHHHHHHHHHCCC--------EEEEEECCCCCCEEEEECCCCCCHHHH--HHHHHCCEEEEECCCCH
T ss_conf 7689999999999997799--------299997798888899979499989999--99997899999836988
No 476
>PRK13695 putative NTPase; Provisional
Probab=84.94 E-value=2.4 Score=20.32 Aligned_cols=104 Identities=18% Similarity=0.258 Sum_probs=67.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHC--CCCCCEE-------CCCEEEEECC-CC---------------EEEEEECCCH
Q ss_conf 89862368504467778864222100--1231000-------1214999517-84---------------3888851661
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKG--EIGGITQ-------HIGAYQVAYQ-GK---------------NITFLDTPGH 440 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~--e~ggitq-------~iga~~~~~~-~~---------------~~~~iDtPGh 440 (884)
|-|-|---.|||||+.++-..--..| =.|=+|+ -+|+.-+... +. .-..+|+++.
T Consensus 6 I~iTG~PGvGKTTli~Kv~~~L~~~g~~v~GF~T~Evre~G~R~GF~vv~l~~g~~~~lA~~~~~~~~~VgkY~V~~~~~ 85 (174)
T PRK13695 6 IGITGMPGVGKTTLVLKIAELLAREGYKVGGFITEEVREGGKRIGFKIIDLDTGEEGILARVGAVSRPRVGKYVVNLEDL 85 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCEEEEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEHHHH
T ss_conf 99878999889999999999986369617469952560388285059999058856876753788985545668716897
Q ss_pred HHHH-HHHHHHHHCCCCEEEEEEC---CCCCCHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 5789-9986664206805999983---6674023577789899709941561233
Q gi|254780787|r 441 AAFY-EMRARGARVTDIAVLVLAA---DEEIMPQAIESINHAKAADVSIIVAINK 491 (884)
Q Consensus 441 ~~f~-~~r~rg~~~~d~~ilvv~~---~~g~~~qt~e~~~~~~~~~~p~iva~nk 491 (884)
+.|. +...+...-|| ++|||= |+=.-+.=.+++.-+-..+.|++..+.+
T Consensus 86 e~~~~~~l~~a~~~~d--livIDEIG~MEl~s~~F~~~V~~~L~s~kpvl~tih~ 138 (174)
T PRK13695 86 ERIAIPAISRALREAD--LIIIDEIGPMELKSKKFVSAVEEVLKSEKPVIATVHR 138 (174)
T ss_pred HHHHHHHHHHCCCCCC--EEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECH
T ss_conf 8998999983535787--9999631033110499999999997389989999775
No 477
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=84.53 E-value=2.5 Score=20.20 Aligned_cols=73 Identities=23% Similarity=0.411 Sum_probs=45.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCC--CCCCEECCCEEEEECC-------------------C---CEEEEEECCCH-
Q ss_conf 898623685044677788642221001--2310001214999517-------------------8---43888851661-
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGE--IGGITQHIGAYQVAYQ-------------------G---KNITFLDTPGH- 440 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e--~ggitq~iga~~~~~~-------------------~---~~~~~iDtPGh- 440 (884)
|.|.|-=+.|||||+-+|..+++...- .-.|-=++|..+++.+ + .++.|+|-+|-
T Consensus 1 iGiVGlPNvGKSTlFnAlT~~~~~~anyPF~TIePN~Gv~~v~v~~p~~~l~~~~~~~~~~~~~~~r~vPve~vDIAGLV 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CCEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEECCEEEEECHHHH
T ss_conf 93448898988999999977998512799667677416200556884166643304331201477400332675210010
Q ss_pred -----------HHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf -----------57899986664206805999983
Q gi|254780787|r 441 -----------AAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 441 -----------~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
.=.+++| -||..|-|||+
T Consensus 81 ~GAskG~GLGNkFL~~iR-----e~DaiihVVd~ 109 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLR-----DADALIHVVDA 109 (318)
T ss_pred CCCCCCCCCHHHHHHHHH-----HCCEEEEEEEC
T ss_conf 566457766599999998-----47889998504
No 478
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=84.50 E-value=0.93 Score=23.14 Aligned_cols=33 Identities=9% Similarity=0.084 Sum_probs=15.8
Q ss_pred EEEEEEEEEEEECCCCCCE------EEEEEEEEEEECCCEE
Q ss_conf 8878999788733898707------8999852178469807
Q gi|254780787|r 789 FLGNAEVLEVFAVTKLGNV------AGCKVSEGKVERGSGV 823 (884)
Q Consensus 789 ~~g~a~v~~vF~~~k~~~i------~G~~V~~G~i~~~~~~ 823 (884)
.+|.|+-.+-|. .+++. .=..|.+=++..|+.+
T Consensus 467 PVCmAKTqyS~S--~Dp~l~GaP~gf~l~Irevr~saGAGF 505 (524)
T cd00477 467 PVCMAKTQYSLS--DDPSLKGAPTGFTLPIRDVRLSAGAGF 505 (524)
T ss_pred CEEEECCCCCCC--CCHHHCCCCCCCEEEEEEEEECCCCCE
T ss_conf 888870787767--792421999998687308998578857
No 479
>KOG4252 consensus
Probab=84.39 E-value=0.75 Score=23.77 Aligned_cols=109 Identities=24% Similarity=0.306 Sum_probs=67.7
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEE------EECCCCEEEEEECCCHHHHHHH---HHHHHH
Q ss_conf 5303898623685044677788642221001231000121499------9517843888851661578999---866642
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQ------VAYQGKNITFLDTPGHAAFYEM---RARGAR 452 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~------~~~~~~~~~~iDtPGh~~f~~~---r~rg~~ 452 (884)
|.-=+.|.|.=..||.|++-...+.-...+- --.||.-. +..+..++.+-||-|.+-|-.+ --||++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdy----kktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaq 94 (246)
T KOG4252 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDY----KKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQ 94 (246)
T ss_pred HHEEEEEECCCCCCHHHHHHHHHCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
T ss_conf 5378999878862468999998524455665----400032352677774089999999872231667789998742564
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHH---HHHCCCCEEEECCCCCCCCC
Q ss_conf 0680599998366740235777898---99709941561233124433
Q gi|254780787|r 453 VTDIAVLVLAADEEIMPQAIESINH---AKAADVSIIVAINKIDKLGA 497 (884)
Q Consensus 453 ~~d~~ilvv~~~~g~~~qt~e~~~~---~~~~~~p~iva~nk~d~~~~ 497 (884)
.| +||.+-.|--.-.-+-.|.- ..--.+|.+++-||||+...
T Consensus 95 a~---vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlved 139 (246)
T KOG4252 95 AS---VLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVED 139 (246)
T ss_pred CE---EEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHH
T ss_conf 04---8998545177789999999999987556875876422005676
No 480
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=84.26 E-value=2.6 Score=20.12 Aligned_cols=111 Identities=13% Similarity=0.163 Sum_probs=59.3
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHH-HHHHCCC--------C-------CCEECCCE-EEEE-----------------C
Q ss_conf 5303898623685044677788642-2210012--------3-------10001214-9995-----------------1
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKA-DVAKGEI--------G-------GITQHIGA-YQVA-----------------Y 427 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~-~~~~~e~--------g-------gitq~iga-~~~~-----------------~ 427 (884)
+-=+++|-|.--+|||+++..+-.. ..+.|.. . -+.++.|- +... +
T Consensus 29 ~GeL~viaarpg~GKT~f~~~~a~~~~~~~g~~vl~~SlEm~~~~~~~Rlls~~~g~~~~~~~~~~~~~~e~~~~~~~~~ 108 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAGKRLHLPDTVFIYTLEEFDAAFDEF 108 (271)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 98089999689986999999999999997699089997049999999999999829971103446778099999999997
Q ss_pred -CCCEEEEEECCCHHHHHHHHH---HHHHCCCCEEEEEECCCCCCH---------HHH-----HHHHHHHHCCCCEEEE-
Q ss_conf -784388885166157899986---664206805999983667402---------357-----7789899709941561-
Q gi|254780787|r 428 -QGKNITFLDTPGHAAFYEMRA---RGARVTDIAVLVLAADEEIMP---------QAI-----ESINHAKAADVSIIVA- 488 (884)
Q Consensus 428 -~~~~~~~iDtPGh~~f~~~r~---rg~~~~d~~ilvv~~~~g~~~---------qt~-----e~~~~~~~~~~p~iva- 488 (884)
....+.+.|.+|+..+..++. +-....++-++|||...-+.. |.+ ..-.+|+.+++|+|++
T Consensus 109 ~~~~~l~i~d~~~~~~~~~i~~~ir~~~~~~~~~~vvIDylqll~~~~~~~~d~~~~i~~i~~~Lk~lAke~~v~Vi~ls 188 (271)
T cd01122 109 EGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVS 188 (271)
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 07998088789999889999999999998289988998317850367867731899999999999999999799779995
Q ss_pred -CCCC
Q ss_conf -2331
Q gi|254780787|r 489 -INKI 492 (884)
Q Consensus 489 -~nk~ 492 (884)
+|+-
T Consensus 189 QlnR~ 193 (271)
T cd01122 189 HLRRP 193 (271)
T ss_pred CCCCC
T ss_conf 26765
No 481
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.67 E-value=0.85 Score=23.40 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=21.0
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 5530389862368504467778864
Q gi|254780787|r 381 IRPPVVTIMGHVDHGKTSLLDAIRK 405 (884)
Q Consensus 381 ~R~pvv~v~ghvd~GKt~lld~~r~ 405 (884)
..-=+++|||+--.||||||..|-+
T Consensus 31 ~~Gei~~llG~nGsGKSTLl~~l~G 55 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALAN 55 (202)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHC
T ss_conf 0984999998999988999999837
No 482
>pfam05049 IIGP Interferon-inducible GTPase (IIGP). Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing.
Probab=83.63 E-value=2.7 Score=19.95 Aligned_cols=114 Identities=16% Similarity=0.249 Sum_probs=69.8
Q ss_pred CCCE-EEEEECCCCCHHHHHHHHHHH-HHHHCCC--C--CCEECCCEEEEECCCCEEEEEECCCHH-----HHHHHHHHH
Q ss_conf 5303-898623685044677788642-2210012--3--100012149995178438888516615-----789998666
Q gi|254780787|r 382 RPPV-VTIMGHVDHGKTSLLDAIRKA-DVAKGEI--G--GITQHIGAYQVAYQGKNITFLDTPGHA-----AFYEMRARG 450 (884)
Q Consensus 382 R~pv-v~v~ghvd~GKt~lld~~r~~-~~~~~e~--g--gitq~iga~~~~~~~~~~~~iDtPGh~-----~f~~~r~rg 450 (884)
+.|+ |+|.|.--.||+|++-+||+- +...|-| | -.|+.--.|..| .-..++|-|-||-. +=..+-.-.
T Consensus 33 ~~~lnIavtGesG~GkSsfINalRg~g~e~~~aA~tGvvetT~~~~~Y~hp-~~pnV~lwDLPG~gt~~f~~~~Yl~~~~ 111 (375)
T pfam05049 33 SAPLKIAVTGDSGNGKSSFINALRGIGHEEDGSAPTGVVETTMKRTPYSHP-HFPNVVLWDLPGLGATNFTVETYLEEMK 111 (375)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCEEEECCCCCCCCCCCHHHHHHHCC
T ss_conf 382479985489986789999874789877776876876632675567899-9998079628999989989899998748
Q ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCC
Q ss_conf 420680599998366740235777898997099415612331244332
Q gi|254780787|r 451 ARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGAD 498 (884)
Q Consensus 451 ~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~ 498 (884)
-.-+|.-|+|.+.- +..--+.-.+-....+-.|-++=+|+|..-.+
T Consensus 112 f~~yDfFiiiss~r--f~~n~v~LAk~i~~mgK~fyfVrtKvD~Dl~~ 157 (375)
T pfam05049 112 FSEYDFFIIISSER--FSLNDVKLAKAIQRMGKRFYFVRTKLDSDLSN 157 (375)
T ss_pred CCCCCEEEEEECCC--CCHHHHHHHHHHHHHCCCEEEEEEECCCCCHH
T ss_conf 56477899996775--43201899999998389479998623676065
No 483
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=83.49 E-value=0.87 Score=23.34 Aligned_cols=31 Identities=39% Similarity=0.395 Sum_probs=24.0
Q ss_pred CCCCCCCCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 4100125530389862368504467778864
Q gi|254780787|r 375 SESDLDIRPPVVTIMGHVDHGKTSLLDAIRK 405 (884)
Q Consensus 375 ~~~~~~~R~pvv~v~ghvd~GKt~lld~~r~ 405 (884)
+-+-...+-=+++|||+--.||||||..|-+
T Consensus 25 ~vs~~i~~Ge~~~ilGpnGsGKSTLl~~i~G 55 (226)
T cd03234 25 DVSLHVESGQVMAILGSSGSGKTTLLDAISG 55 (226)
T ss_pred CCEEEEECCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 9778991880999998999609999999967
No 484
>KOG3887 consensus
Probab=83.12 E-value=2.9 Score=19.81 Aligned_cols=110 Identities=28% Similarity=0.403 Sum_probs=68.5
Q ss_pred CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC------CCCCEE-CCCEEEEECCCCEEEEEECCCHHHH-----
Q ss_conf 1001255303898623685044677788642221001------231000-1214999517843888851661578-----
Q gi|254780787|r 376 ESDLDIRPPVVTIMGHVDHGKTSLLDAIRKADVAKGE------IGGITQ-HIGAYQVAYQGKNITFLDTPGHAAF----- 443 (884)
Q Consensus 376 ~~~~~~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e------~ggitq-~iga~~~~~~~~~~~~iDtPGh~~f----- 443 (884)
.+.+++| |-.|||--.|||++-.-.-+ +....| ..-||+ ||.... ..+.++|-||.-.|
T Consensus 23 ~~~~kp~---ilLMG~rRsGKsSI~KVVFh-kMsPneTlflESTski~~d~is~sf-----inf~v~dfPGQ~~~Fd~s~ 93 (347)
T KOG3887 23 DSGMKPR---ILLMGLRRSGKSSIQKVVFH-KMSPNETLFLESTSKITRDHISNSF-----INFQVWDFPGQMDFFDPSF 93 (347)
T ss_pred CCCCCCE---EEEEEECCCCCCHHHHEEEE-CCCCCCEEEEECCCCCCHHHHHHHH-----CCEEEEECCCCCCCCCCCC
T ss_conf 6788865---89973010473200311233-2698743676425753376653320-----3437751588656678765
Q ss_pred -HHHHHHHHHCCCCEEEEEECCCCC-CHHHHHHHHHHHHCCC----CEEEECCCCCCCCC
Q ss_conf -999866642068059999836674-0235777898997099----41561233124433
Q gi|254780787|r 444 -YEMRARGARVTDIAVLVLAADEEI-MPQAIESINHAKAADV----SIIVAINKIDKLGA 497 (884)
Q Consensus 444 -~~~r~rg~~~~d~~ilvv~~~~g~-~~qt~e~~~~~~~~~~----p~iva~nk~d~~~~ 497 (884)
..|.-| -|...|.|||+-+-. ++=|.=++..++.+++ -|=|.+.|+|-+..
T Consensus 94 D~e~iF~---~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887 94 DYEMIFR---GVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred CHHHHHH---CCCEEEEEEECHHHHHHHHHHHHHHHHHEEECCCCCEEEEEEEECCCCCH
T ss_conf 8899874---14749999936588999999999876530551798449999973467754
No 485
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=82.79 E-value=2.9 Score=19.72 Aligned_cols=86 Identities=21% Similarity=0.283 Sum_probs=55.9
Q ss_pred CCCCEEEEEECCCCCHHHHHH-HHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 553038986236850446777-8864222100123100012149995178438888516615789998666420680599
Q gi|254780787|r 381 IRPPVVTIMGHVDHGKTSLLD-AIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 381 ~R~pvv~v~ghvd~GKt~lld-~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
++-=|+.|.|.--.|||||.= .+.. +|.-| ..+.|||+-.--+-.-+..+|..+..+.
T Consensus 50 P~GRi~ei~G~essGKTtlal~~ia~-----------aQk~g--------g~~~~iD~E~a~d~~~a~~lGVD~~~l~-- 108 (322)
T pfam00154 50 PKGRIIEIYGPESSGKTTLALHAIAE-----------AQKAG--------GTAAFIDAEHALDPVYAKKLGVDIDNLL-- 108 (322)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH-----------HHHCC--------CEEEEEEHHHHCCHHHHHHCCCCHHHEE--
T ss_conf 78708999889877789999999999-----------97349--------9389985366059889998098802538--
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 998366740235777898997099415612
Q gi|254780787|r 460 VLAADEEIMPQAIESINHAKAADVSIIVAI 489 (884)
Q Consensus 460 vv~~~~g~~~qt~e~~~~~~~~~~p~iva~ 489 (884)
++-.+.+ .|..+.+..+-..+-..+|++
T Consensus 109 ~~qpd~~--Eqal~i~~~li~~~~~~liVi 136 (322)
T pfam00154 109 VSQPDTG--EQALEIADMLVRSGAVDLIVV 136 (322)
T ss_pred EECCCHH--HHHHHHHHHHHCCCCCCEEEE
T ss_conf 9778839--999999999853799765998
No 486
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.78 E-value=0.94 Score=23.12 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=20.6
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 303898623685044677788642
Q gi|254780787|r 383 PPVVTIMGHVDHGKTSLLDAIRKA 406 (884)
Q Consensus 383 ~pvv~v~ghvd~GKt~lld~~r~~ 406 (884)
-=+++|||+--.||||||..|-+-
T Consensus 23 ge~~~iiGpSGsGKSTll~~i~GL 46 (214)
T cd03297 23 EEVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 979999999973599999999849
No 487
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=82.71 E-value=0.95 Score=23.07 Aligned_cols=33 Identities=21% Similarity=0.152 Sum_probs=24.7
Q ss_pred CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 100125530389862368504467778864222
Q gi|254780787|r 376 ESDLDIRPPVVTIMGHVDHGKTSLLDAIRKADV 408 (884)
Q Consensus 376 ~~~~~~R~pvv~v~ghvd~GKt~lld~~r~~~~ 408 (884)
-+-...+-=++||+|+--.||||||..|-+-.-
T Consensus 20 vsl~i~~Ge~~~lvGpnGaGKSTLl~~i~Gl~~ 52 (255)
T PRK11248 20 INLTLESGELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 177986998999999998469999999975998
No 488
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=82.60 E-value=0.99 Score=22.96 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=22.6
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 553038986236850446777886422
Q gi|254780787|r 381 IRPPVVTIMGHVDHGKTSLLDAIRKAD 407 (884)
Q Consensus 381 ~R~pvv~v~ghvd~GKt~lld~~r~~~ 407 (884)
.+-=+++|||+--.||||||..|.+..
T Consensus 21 ~~Ge~v~iiGpNGaGKSTLlk~i~Gl~ 47 (245)
T PRK03695 21 RAGEILHLVGPNGAGKSTLLARMAGLL 47 (245)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 599899999789941999999984668
No 489
>KOG2749 consensus
Probab=82.21 E-value=1.2 Score=22.32 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=28.5
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 1255303898623685044677788642221001
Q gi|254780787|r 379 LDIRPPVVTIMGHVDHGKTSLLDAIRKADVAKGE 412 (884)
Q Consensus 379 ~~~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e 412 (884)
...+-|.|+|.|-.|.|||||.-.|.+-.|-.|-
T Consensus 99 ~~~~GPrv~vVGp~d~GKsTl~r~L~nyavk~gr 132 (415)
T KOG2749 99 ESSYGPRVMVVGPTDVGKSTLCRILLNYAVKQGR 132 (415)
T ss_pred HHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 0025977999898765667899999999987178
No 490
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=82.11 E-value=1.1 Score=22.77 Aligned_cols=29 Identities=31% Similarity=0.347 Sum_probs=23.6
Q ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 01255303898623685044677788642
Q gi|254780787|r 378 DLDIRPPVVTIMGHVDHGKTSLLDAIRKA 406 (884)
Q Consensus 378 ~~~~R~pvv~v~ghvd~GKt~lld~~r~~ 406 (884)
-...+--|||++|.=-.||||||-+|-+-
T Consensus 24 l~v~~Geiv~llG~NGaGKTTlLkti~Gl 52 (237)
T COG0410 24 LEVERGEIVALLGRNGAGKTTLLKTIMGL 52 (237)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 58768988999899988889999998589
No 491
>KOG3125 consensus
Probab=82.10 E-value=3.1 Score=19.55 Aligned_cols=109 Identities=22% Similarity=0.193 Sum_probs=66.3
Q ss_pred CCCCCEEEEEECCCCCHHH-HHHHHHHHHHHHCCC-----CCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHC
Q ss_conf 2553038986236850446-777886422210012-----3100012149995178438888516615789998666420
Q gi|254780787|r 380 DIRPPVVTIMGHVDHGKTS-LLDAIRKADVAKGEI-----GGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARV 453 (884)
Q Consensus 380 ~~R~pvv~v~ghvd~GKt~-lld~~r~~~~~~~e~-----ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~ 453 (884)
..|--|-.|||-.-.|||| ||-.+|+...+..-. -+=|.+-...-+..++....---.|| +.|-.--.--+--
T Consensus 24 ~t~G~i~vI~gPMfSGKTt~LLrr~r~~~~~grrv~liK~~kDTRy~~~si~Thdg~~~~c~~lp~-a~~~s~f~~d~~~ 102 (234)
T KOG3125 24 MTRGTIHVILGPMFSGKTTELLRRIRREIIAGRRVLLIKYAKDTRYESSSIVTHDGIEMPCWALPD-ASFLSEFGKDALN 102 (234)
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHEEEECCCCCCCCCCCCC-CHHHHHHHHHHHC
T ss_conf 887638999525337636899999999875185699997567752111105732587564011678-4367787788755
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 680599998366740235777898997099415612
Q gi|254780787|r 454 TDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAI 489 (884)
Q Consensus 454 ~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~ 489 (884)
-|+.|+-||--.=+.-|-.++=.+|...+.+.|||-
T Consensus 103 ~~vdVigIDEaQFf~dl~efc~evAd~~Gk~Vivag 138 (234)
T KOG3125 103 GDVDVIGIDEAQFFGDLYEFCREVADVHGKTVIVAG 138 (234)
T ss_pred CCCEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 831099842788748999999998741497899996
No 492
>PRK10867 signal recognition particle protein; Provisional
Probab=81.82 E-value=3.2 Score=19.49 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=18.7
Q ss_pred CCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 53038986236850446777886
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIR 404 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r 404 (884)
.|-||.+.|-=-.||||-.-+|-
T Consensus 99 ~p~VIm~vGLqGsGKTTT~aKLA 121 (453)
T PRK10867 99 PPAVVLMAGLQGAGKTTSVGKLG 121 (453)
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 99699997468885185899999
No 493
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=81.81 E-value=1.1 Score=22.61 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=25.4
Q ss_pred CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 24100125530389862368504467778864222
Q gi|254780787|r 374 DSESDLDIRPPVVTIMGHVDHGKTSLLDAIRKADV 408 (884)
Q Consensus 374 ~~~~~~~~R~pvv~v~ghvd~GKt~lld~~r~~~~ 408 (884)
++-+-...+-=||+|+||=-.||||||..|-+---
T Consensus 39 ~~isf~i~~GeivgilG~NGaGKSTLl~~i~Gl~~ 73 (224)
T cd03220 39 KDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP 73 (224)
T ss_pred CCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 67078983898999997999819999999975877
No 494
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=81.80 E-value=3.2 Score=19.48 Aligned_cols=57 Identities=28% Similarity=0.362 Sum_probs=43.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 88885166157899986664206805999983667402357778989970994156123
Q gi|254780787|r 432 ITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAIN 490 (884)
Q Consensus 432 ~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~n 490 (884)
+.+||||=--.++--+ .-+..+|.+||||....--..+-.+++..+...++ .-+++|
T Consensus 151 ~VIiDtPPvl~~~Da~-~la~~~D~vllVvr~~~t~~~~v~~a~~~L~~~~v-lG~VlN 207 (207)
T TIGR03018 151 IIIIDTPPLLVFSEAR-ALARLVGQIVLVVEEGRTTQEAVKEALSALESCKV-LGVVLN 207 (207)
T ss_pred EEEEECCCCCCCHHHH-HHHHHCCEEEEEEECCCCCHHHHHHHHHHHCCCCE-EEEEEC
T ss_conf 7998389622323699-99996896999997998789999999998668980-699969
No 495
>TIGR00955 3a01204 Pigment precourser permease; InterPro: IPR005284 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes different parts of a membrane-spanning permease system necessary for the transport of pigment precursor into pigment cells responsible for eye color. White protein dimerises with brown protein for the transport of guanine and with scarlet protein for the transport of tryptophan.; GO: 0006810 transport.
Probab=81.76 E-value=1.3 Score=22.21 Aligned_cols=35 Identities=26% Similarity=0.441 Sum_probs=25.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCC--CEEC
Q ss_conf 3898623685044677788642221001231--0001
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADVAKGEIGG--ITQH 419 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~~~~e~gg--itq~ 419 (884)
.+.|||==-.||||||+.|-+-+-..-+-.| |+.+
T Consensus 60 LlA~mGsSGAGKTTLmn~La~R~~~g~~~~g~~v~lN 96 (671)
T TIGR00955 60 LLAIMGSSGAGKTTLMNALAFRSPKGLKVSGSVVLLN 96 (671)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEECCCEEEEC
T ss_conf 6898478766268999998533747861468367875
No 496
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=81.50 E-value=3.3 Score=19.41 Aligned_cols=112 Identities=22% Similarity=0.295 Sum_probs=66.4
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHH---HHCCCCCCEE---CCCEEE----------EE----------------CCCC
Q ss_conf 30389862368504467778864222---1001231000---121499----------95----------------1784
Q gi|254780787|r 383 PPVVTIMGHVDHGKTSLLDAIRKADV---AKGEIGGITQ---HIGAYQ----------VA----------------YQGK 430 (884)
Q Consensus 383 ~pvv~v~ghvd~GKt~lld~~r~~~~---~~~e~ggitq---~iga~~----------~~----------------~~~~ 430 (884)
.-||..+|----||||-|-+|=.--+ ...-.|=||- .|||.+ +| ....
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCC
T ss_conf 85799989988758879999999997532576068997144115289999999998699559963999999999985318
Q ss_pred EEEEEECCCHHHHHHHHHHH------HHCCCCEEEEEECCCCCCHHH-HHHHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf 38888516615789998666------420680599998366740235-77789899709941561233124433
Q gi|254780787|r 431 NITFLDTPGHAAFYEMRARG------ARVTDIAVLVLAADEEIMPQA-IESINHAKAADVSIIVAINKIDKLGA 497 (884)
Q Consensus 431 ~~~~iDtPGh~~f~~~r~rg------~~~~d~~ilvv~~~~g~~~qt-~e~~~~~~~~~~p~iva~nk~d~~~~ 497 (884)
.+.|+||-|+.....+..-. .+-....-||+++.- ..+. .|.+......++- -+-++|+|-...
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~~~~i~-~~I~TKlDET~s 353 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFSLFPID-GLIFTKLDETTS 353 (407)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCC--CHHHHHHHHHHHCCCCCC-EEEEECCCCCCC
T ss_conf 88999689988337899999999970356621799984576--468899999972458866-168971335676
No 497
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=81.45 E-value=1.2 Score=22.50 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=24.3
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH-HHHCC
Q ss_conf 553038986236850446777886422-21001
Q gi|254780787|r 381 IRPPVVTIMGHVDHGKTSLLDAIRKAD-VAKGE 412 (884)
Q Consensus 381 ~R~pvv~v~ghvd~GKt~lld~~r~~~-~~~~e 412 (884)
..-=|+||+|.=-.||||||.+|-+-- ...|+
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~~~l~p~~G~ 58 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLLKPKSGE 58 (258)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
T ss_conf 599799998998889999999986567888877
No 498
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.42 E-value=1.2 Score=22.49 Aligned_cols=27 Identities=30% Similarity=0.302 Sum_probs=21.3
Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 255303898623685044677788642
Q gi|254780787|r 380 DIRPPVVTIMGHVDHGKTSLLDAIRKA 406 (884)
Q Consensus 380 ~~R~pvv~v~ghvd~GKt~lld~~r~~ 406 (884)
...-=+++|||+--.||||||..|-.-
T Consensus 23 v~~Ge~~~iiGpSGsGKSTllr~i~Gl 49 (232)
T cd03300 23 IKEGEFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 879989999999998399999999779
No 499
>pfam08364 IF2_assoc Bacterial translation initiation factor IF-2 associated region. Most of the sequences in this alignment come from bacterial translation initiation factors (IF-2, also pfam04760), but the domain is also found in the eukaryotic translation initiation factor 4 gamma in yeast and in a hypothetical Euglenozoa protein of unknown function.
Probab=81.41 E-value=0.79 Score=23.63 Aligned_cols=39 Identities=46% Similarity=0.672 Sum_probs=29.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 74321025666666565302555557523321343112355677
Q gi|254780787|r 15 KKTLTLKTSSLGVGHSSFQNQGANQGRARSVVVETRKRRSYVQG 58 (884)
Q Consensus 15 kk~~t~k~s~~~~~~~~~~~~~~~~~r~k~v~vE~rkkr~~~~~ 58 (884)
++++++++. ..+..++++++|+++++++|.+++|.+.+.
T Consensus 2 ~kkitLkrk-----~~s~vk~~~s~GrsktV~VEvRKkRt~vk~ 40 (41)
T pfam08364 2 PKKLTLKRK-----TTSTVKQSFSHGRSKTVVVEVRKKRTYVKR 40 (41)
T ss_pred CCCEEEEEE-----EEEEEEECCCCCCCEEEEEEEEEEEEEECC
T ss_conf 855798715-----468898447899837899999986877837
No 500
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=81.41 E-value=1.2 Score=22.42 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=0.0
Q ss_pred EEEEEECCCCCHHHHHHHHHH
Q ss_conf 389862368504467778864
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRK 405 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~ 405 (884)
|++++|.--.||||||..|-+
T Consensus 30 i~~l~G~NGaGKTTLlk~i~G 50 (206)
T PRK13539 30 ALVLTGPNGSGKTTLLRLLAG 50 (206)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999989999989999999958
Done!