HHsearch alignment for GI: 254780787 and conserved domain: pfam00448

>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=96.18  E-value=0.019  Score=34.70  Aligned_cols=111  Identities=19%  Similarity=0.203  Sum_probs=61.3

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHC-CCCCCE---ECCCEE-------------EEE-------------------
Q ss_conf             30389862368504467778864222100-123100---012149-------------995-------------------
Q gi|254780787|r  383 PPVVTIMGHVDHGKTSLLDAIRKADVAKG-EIGGIT---QHIGAY-------------QVA-------------------  426 (884)
Q Consensus       383 ~pvv~v~ghvd~GKt~lld~~r~~~~~~~-e~ggit---q~iga~-------------~~~-------------------  426 (884)
T Consensus         1 P~vi~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~~   80 (196)
T pfam00448         1 PNVILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKAK   80 (196)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             96999989999988999999999999779928999758776889999999998639817814877787899999999988


Q ss_pred             CCCCEEEEEECCCHHHHHH-HHHH-----HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf             1784388885166157899-9866-----6420680599998366740235777898997099415612331244
Q gi|254780787|r  427 YQGKNITFLDTPGHAAFYE-MRAR-----GARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKL  495 (884)
Q Consensus       427 ~~~~~~~~iDtPGh~~f~~-~r~r-----g~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~  495 (884)
T Consensus        81 ~~~~D~IlIDTaGr~~~d~~~~~el~~~~~~~~~~~~~LVl~a~~~~--~~~~~~~~f~~~~~~~~~I~TKlDet  153 (196)
T pfam00448        81 AENYDVVLVDTAGRLQNDKNLMDELKKIKRVIAPDEVLLVLDATTGQ--NALNQAKAFNEAVGITGVILTKLDGD  153 (196)
T ss_pred             HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC--CHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             46899999989998747677899999998522873028998567782--13789998760047762688840578