HHsearch alignment for GI: 254780787 and conserved domain: pfam00448
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=96.18 E-value=0.019 Score=34.70 Aligned_cols=111 Identities=19% Similarity=0.203 Sum_probs=61.3
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHC-CCCCCE---ECCCEE-------------EEE-------------------
Q ss_conf 30389862368504467778864222100-123100---012149-------------995-------------------
Q gi|254780787|r 383 PPVVTIMGHVDHGKTSLLDAIRKADVAKG-EIGGIT---QHIGAY-------------QVA------------------- 426 (884)
Q Consensus 383 ~pvv~v~ghvd~GKt~lld~~r~~~~~~~-e~ggit---q~iga~-------------~~~------------------- 426 (884)
T Consensus 1 P~vi~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~~ 80 (196)
T pfam00448 1 PNVILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKAK 80 (196)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 96999989999988999999999999779928999758776889999999998639817814877787899999999988
Q ss_pred CCCCEEEEEECCCHHHHHH-HHHH-----HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 1784388885166157899-9866-----6420680599998366740235777898997099415612331244
Q gi|254780787|r 427 YQGKNITFLDTPGHAAFYE-MRAR-----GARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKL 495 (884)
Q Consensus 427 ~~~~~~~~iDtPGh~~f~~-~r~r-----g~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~ 495 (884)
T Consensus 81 ~~~~D~IlIDTaGr~~~d~~~~~el~~~~~~~~~~~~~LVl~a~~~~--~~~~~~~~f~~~~~~~~~I~TKlDet 153 (196)
T pfam00448 81 AENYDVVLVDTAGRLQNDKNLMDELKKIKRVIAPDEVLLVLDATTGQ--NALNQAKAFNEAVGITGVILTKLDGD 153 (196)
T ss_pred HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC--CHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 46899999989998747677899999998522873028998567782--13789998760047762688840578