HHsearch alignment for GI: 254780787 and conserved domain: pfam05783
>pfam05783 DLIC Dynein light intermediate chain (DLIC). This family consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo.
Probab=96.84 E-value=0.0064 Score=37.94 Aligned_cols=88 Identities=17% Similarity=0.251 Sum_probs=47.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEE--------CCCCEEEEEE-CCCHHHHHHHHHHHHHCCC
Q ss_conf 389862368504467778864222100123100012149995--------1784388885-1661578999866642068
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVA--------YQGKNITFLD-TPGHAAFYEMRARGARVTD 455 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~--------~~~~~~~~iD-tPGh~~f~~~r~rg~~~~d 455 (884)
T Consensus 47 ~ILVLGd~~sGKttLi~kLQg~e--d~kkG~---gLeY~YldV~DedrDd~tRl~VWiLDgd~~~~~LLKfaLn~~si~~ 121 (490)
T pfam05783 47 NVLVLGEDGSGKTTLIAKLQGVE--HPKKGR---GLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFALNAESLAD 121 (490)
T ss_pred EEEEECCCCCCHHHHHHHHCCCC--CCCCCC---CCCEEEEECCCCCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCCCC
T ss_conf 28997789875589998852744--346687---5433888512465441100235884487011124315788545020
Q ss_pred C-EEEEEECCCC--CCHHHHHHHHH
Q ss_conf 0-5999983667--40235777898
Q gi|254780787|r 456 I-AVLVLAADEE--IMPQAIESINH 477 (884)
Q Consensus 456 ~-~ilvv~~~~g--~~~qt~e~~~~ 477 (884)
T Consensus 122 TlIvI~lDms~PW~im~qL~~Wi~V 146 (490)
T pfam05783 122 TLVIFVVDMSRPWTIMESLQKWASV 146 (490)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 2899997257747899999999999