HHsearch alignment for GI: 254780787 and conserved domain: smart00173
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.23 E-value=7e-11 Score=92.40 Aligned_cols=143 Identities=22% Similarity=0.264 Sum_probs=96.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEE---EECCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 898623685044677788642221001231000121499---95178--4388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQ---VAYQG--KNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~---~~~~~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
T Consensus 3 iv~vGd~~vGKTsli~r~~~~~f~~~y~----~Ti~~~~~k~i~~~~~~~~l~iwDt~G~e~~~~~~~~~~~~a~~~ilv 78 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQGHFVDDYD----PTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLV 78 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCC----CCEEEEEEEEEEECCEEEEEEEEECCCCCCHHHHHHHHCCCCCEEEEE
T ss_conf 9999999978999999997297998778----813678999999999999999998999710356777753798779998
Q ss_pred EECCCCCCHHHHHHHHH----H-H---HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 98366740235777898----9-9---70994156123312443320002210000132000123474036311002477
Q gi|254780787|r 461 LAADEEIMPQAIESINH----A-K---AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLN 532 (884)
Q Consensus 461 v~~~~g~~~qt~e~~~~----~-~---~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (884)
T Consensus 79 ydi~~---~~Sf~~~~~~~~~i~~~~~~~~~piilvgnK~DL~~~r--~V~~~e~--~~~a~~~--~~~~~E~SAk~g~n 149 (164)
T smart00173 79 YSITD---RQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESER--VVSTEEG--KELARQW--GCPFLETSAKERVN 149 (164)
T ss_pred EECCC---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHCC--CCCHHHH--HHHHHHC--CCEEEEECCCCCCC
T ss_conf 30798---89999999999999986188888668777534630117--8999999--9999983--99899985898817
Q ss_pred CCCCCCCHH
Q ss_conf 411221000
Q gi|254780787|r 533 LDKLLDAIL 541 (884)
Q Consensus 533 ~~~~~~~~~ 541 (884)
T Consensus 150 V~~~F~~l~ 158 (164)
T smart00173 150 VDEAFYDLV 158 (164)
T ss_pred HHHHHHHHH
T ss_conf 899999999