HHsearch alignment for GI: 254780787 and conserved domain: smart00173

>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.23  E-value=7e-11  Score=92.40  Aligned_cols=143  Identities=22%  Similarity=0.264  Sum_probs=96.4

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEE---EECCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             898623685044677788642221001231000121499---95178--4388885166157899986664206805999
Q gi|254780787|r  386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQ---VAYQG--KNITFLDTPGHAAFYEMRARGARVTDIAVLV  460 (884)
Q Consensus       386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~---~~~~~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv  460 (884)
T Consensus         3 iv~vGd~~vGKTsli~r~~~~~f~~~y~----~Ti~~~~~k~i~~~~~~~~l~iwDt~G~e~~~~~~~~~~~~a~~~ilv   78 (164)
T smart00173        3 LVVLGSGGVGKSALTIQFVQGHFVDDYD----PTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLV   78 (164)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCCCC----CCEEEEEEEEEEECCEEEEEEEEECCCCCCHHHHHHHHCCCCCEEEEE
T ss_conf             9999999978999999997297998778----813678999999999999999998999710356777753798779998


Q ss_pred             EECCCCCCHHHHHHHHH----H-H---HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf             98366740235777898----9-9---70994156123312443320002210000132000123474036311002477
Q gi|254780787|r  461 LAADEEIMPQAIESINH----A-K---AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLN  532 (884)
Q Consensus       461 v~~~~g~~~qt~e~~~~----~-~---~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (884)
T Consensus        79 ydi~~---~~Sf~~~~~~~~~i~~~~~~~~~piilvgnK~DL~~~r--~V~~~e~--~~~a~~~--~~~~~E~SAk~g~n  149 (164)
T smart00173       79 YSITD---RQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESER--VVSTEEG--KELARQW--GCPFLETSAKERVN  149 (164)
T ss_pred             EECCC---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHCC--CCCHHHH--HHHHHHC--CCEEEEECCCCCCC
T ss_conf             30798---89999999999999986188888668777534630117--8999999--9999983--99899985898817


Q ss_pred             CCCCCCCHH
Q ss_conf             411221000
Q gi|254780787|r  533 LDKLLDAIL  541 (884)
Q Consensus       533 ~~~~~~~~~  541 (884)
T Consensus       150 V~~~F~~l~  158 (164)
T smart00173      150 VDEAFYDLV  158 (164)
T ss_pred             HHHHHHHHH
T ss_conf             899999999