HHsearch alignment for GI: 254780787 and conserved domain: smart00174
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.16 E-value=1.2e-10 Score=90.81 Aligned_cols=152 Identities=16% Similarity=0.243 Sum_probs=93.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHH-HCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 898623685044677788642221-0012310001214999517843888851661578999866642068059999836
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVA-KGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAAD 464 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~-~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~ 464 (884)
T Consensus 1 ivllGd~~VGKTsli~r~~~~~f~~~y~~Ti~~~~~~~~~~~~~~~~l~i~DtaG~e~~~~l~~~~~~~a~~~ilvydvt 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCHHHCCCCCEEEEEEECC
T ss_conf 59989789759999999953989998578505789999999999999999948987034545001104886899997589
Q ss_pred CCCCHHHHHHHH-----HHH--HCCCCEEEECCCCCCCCCCCCHHHH--H----H-HCCC-CCCCCCCCCCEEEEEEECC
Q ss_conf 674023577789-----899--7099415612331244332000221--0----0-0013-2000123474036311002
Q gi|254780787|r 465 EEIMPQAIESIN-----HAK--AADVSIIVAINKIDKLGADPQKVRM--S----L-LKHD-VFVESMGGDILDVEISAKN 529 (884)
Q Consensus 465 ~g~~~qt~e~~~-----~~~--~~~~p~iva~nk~d~~~~~~~~~~~--~----~-~~~~-~~~~~~~~~~~~~~~~~~~ 529 (884)
T Consensus 81 ~~---~Sf~~~~~~w~~~i~~~~~~~piilVgnK~DL~~~~~~~~~~~~~~~~~Vs~~~~~~~a~~~-~~~~y~EtSAk~ 156 (174)
T smart00174 81 SP---ASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRI-GAVKYLECSALT 156 (174)
T ss_pred CH---HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHC-CCCEEEEECCCC
T ss_conf 87---89999999899999986889869999875425012333545533146500299999999983-997899964588
Q ss_pred CCCCCCCCCCHH
Q ss_conf 477411221000
Q gi|254780787|r 530 NLNLDKLLDAIL 541 (884)
Q Consensus 530 ~~~~~~~~~~~~ 541 (884)
T Consensus 157 g~nV~e~F~~l~ 168 (174)
T smart00174 157 QEGVREVFEEAI 168 (174)
T ss_pred CCCHHHHHHHHH
T ss_conf 949899999999