HHsearch alignment for GI: 254780787 and conserved domain: smart00175
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.21 E-value=5.9e-11 Score=92.88 Aligned_cols=147 Identities=21% Similarity=0.288 Sum_probs=96.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCC--CCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 89862368504467778864222100123--1000121499951784388885166157899986664206805999983
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIG--GITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~g--gitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
T Consensus 3 i~vvG~~~vGKTsli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~~~~~ilvfdi 82 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDI 82 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99999899779999999941999998688456666779999999999999996799446647799883366536884368
Q ss_pred CCCCCHHHHHHHH----HHHH---CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 6674023577789----8997---09941561233124433200022100001320001234740363110024774112
Q gi|254780787|r 464 DEEIMPQAIESIN----HAKA---ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKL 536 (884)
Q Consensus 464 ~~g~~~qt~e~~~----~~~~---~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (884)
T Consensus 83 ~~---~~Sf~~i~~w~~~i~~~~~~~~piilvgnK~Dl~~~r--~V~~~e~~--~~a~~~--~~~~~e~SAk~~~~v~e~ 153 (164)
T smart00175 83 TN---RESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQR--QVSREEAE--AFAEEH--GLPFFETSAKTNTNVEEA 153 (164)
T ss_pred CC---HHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHC--CCCHHHHH--HHHHHC--CCEEEEECCCCCCCHHHH
T ss_conf 99---8999999999999998679998255116456856518--79999999--999984--997999831669088999
Q ss_pred CCCHH
Q ss_conf 21000
Q gi|254780787|r 537 LDAIL 541 (884)
Q Consensus 537 ~~~~~ 541 (884)
T Consensus 154 F~~l~ 158 (164)
T smart00175 154 FEELA 158 (164)
T ss_pred HHHHH
T ss_conf 99999