HHsearch alignment for GI: 254780787 and conserved domain: smart00175

>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.21  E-value=5.9e-11  Score=92.88  Aligned_cols=147  Identities=21%  Similarity=0.288  Sum_probs=96.3

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCCC--CCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             89862368504467778864222100123--1000121499951784388885166157899986664206805999983
Q gi|254780787|r  386 VTIMGHVDHGKTSLLDAIRKADVAKGEIG--GITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA  463 (884)
Q Consensus       386 v~v~ghvd~GKt~lld~~r~~~~~~~e~g--gitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~  463 (884)
T Consensus         3 i~vvG~~~vGKTsli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~~~~~ilvfdi   82 (164)
T smart00175        3 IILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDI   82 (164)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             99999899779999999941999998688456666779999999999999996799446647799883366536884368


Q ss_pred             CCCCCHHHHHHHH----HHHH---CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf             6674023577789----8997---09941561233124433200022100001320001234740363110024774112
Q gi|254780787|r  464 DEEIMPQAIESIN----HAKA---ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKL  536 (884)
Q Consensus       464 ~~g~~~qt~e~~~----~~~~---~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  536 (884)
T Consensus        83 ~~---~~Sf~~i~~w~~~i~~~~~~~~piilvgnK~Dl~~~r--~V~~~e~~--~~a~~~--~~~~~e~SAk~~~~v~e~  153 (164)
T smart00175       83 TN---RESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQR--QVSREEAE--AFAEEH--GLPFFETSAKTNTNVEEA  153 (164)
T ss_pred             CC---HHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHC--CCCHHHHH--HHHHHC--CCEEEEECCCCCCCHHHH
T ss_conf             99---8999999999999998679998255116456856518--79999999--999984--997999831669088999


Q ss_pred             CCCHH
Q ss_conf             21000
Q gi|254780787|r  537 LDAIL  541 (884)
Q Consensus       537 ~~~~~  541 (884)
T Consensus       154 F~~l~  158 (164)
T smart00175      154 FEELA  158 (164)
T ss_pred             HHHHH
T ss_conf             99999