HHsearch alignment for GI: 254780787 and conserved domain: smart00176
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.86 E-value=1.2e-08 Score=77.00 Aligned_cols=141 Identities=18% Similarity=0.221 Sum_probs=91.7
Q ss_pred EECCCCCHHHHHHHHHHHHH-HHCCCCCCEECCCE--EEEEC--CCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 62368504467778864222-10012310001214--99951--784388885166157899986664206805999983
Q gi|254780787|r 389 MGHVDHGKTSLLDAIRKADV-AKGEIGGITQHIGA--YQVAY--QGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 389 ~ghvd~GKt~lld~~r~~~~-~~~e~ggitq~iga--~~~~~--~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
T Consensus 1 vGD~gVGKTsli~R~~~~~F~~~y~p---TiGvd~~~~~~~~~~~~i~l~iWDTAGqE~f~sl~~~yyr~a~~~IlvfDv 77 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVA---TLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDV 77 (200)
T ss_pred CCCCCCCHHHHHHHHHCCCCCCCCCC---CEEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCHHHCCCCCEEEEEEEC
T ss_conf 98988789999999940999999788---714898999999899899999998988700011026550578788999635
Q ss_pred CCCCCHHHHHHHH-HHH--HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCH
Q ss_conf 6674023577789-899--7099415612331244332000221000013200012347403631100247741122100
Q gi|254780787|r 464 DEEIMPQAIESIN-HAK--AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAI 540 (884)
Q Consensus 464 ~~g~~~qt~e~~~-~~~--~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (884)
T Consensus 78 t~~~SF~~l~~W~~~l~~~~~~ipiiLvGNK~DL~~---r~V~~e~---~~~a~~~--~~~y~EtSAKt~~Nv~e~F~~L 149 (200)
T smart00176 78 TARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKD---RKVKAKS---ITFHRKK--NLQYYDISAKSNYNFEKPFLWL 149 (200)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC---CCCCHHH---HHHHHHC--CCCEEEEECCCCCCHHHHHHHH
T ss_conf 877899989999999998579998899998875740---4365999---9999987--9978983004696979999999