HHsearch alignment for GI: 254780787 and conserved domain: smart00177
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.40 E-value=2e-12 Score=102.99 Aligned_cols=150 Identities=17% Similarity=0.125 Sum_probs=104.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 89862368504467778864222100123100012149995178438888516615789998666420680599998366
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADE 465 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~ 465 (884)
T Consensus 16 ililG~~~~GKTsil~~l~~~~~~~~---~pTvg~~~~~~~~~~~~l~iwD~~Gqe~~r~l~~~Yy~~a~~iIfVvD~sd 92 (175)
T smart00177 16 ILMVGLDAAGKTTILYKLKLGESVTT---IPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSND 92 (175)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC---CCCCCCEEEEEEECCEEEEEEECCCCCCCCHHHHHHCCCCCEEEEEEECCC
T ss_conf 99998899998999999965997775---797881079999898999999899985455367775577618999986687
Q ss_pred C-CCHHHHHHHHH----HHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCH
Q ss_conf 7-40235777898----997099415612331244332000221000013200012347403631100247741122100
Q gi|254780787|r 466 E-IMPQAIESINH----AKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAI 540 (884)
Q Consensus 466 g-~~~qt~e~~~~----~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (884)
T Consensus 93 ~~~~~~~~~~l~~~l~~~~~~~~piLil~NK~Dl~~~~~~~ei~~~l~l---~~~~~~~~~i~~~SA~tG~GI~e~f~wL 169 (175)
T smart00177 93 RDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGL---HSIRDRNWYIQPTCATSGDGLYEGLTWL 169 (175)
T ss_pred HHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCH---HHHCCCCEEEEEEECCCCCCHHHHHHHH
T ss_conf 7899999999999963153169869999845667678899999999686---6540797599982687896989999999
Q ss_pred H
Q ss_conf 0
Q gi|254780787|r 541 L 541 (884)
Q Consensus 541 ~ 541 (884)
T Consensus 170 ~ 170 (175)
T smart00177 170 S 170 (175)
T ss_pred H
T ss_conf 9