RPSBLAST alignment for GI: 254780787 and conserved domain: TIGR00491
>gnl|CDD|129582 TIGR00491, aIF-2, translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. Length = 590
Score = 146 bits (370), Expect = 2e-35
Identities = 138/562 (24%), Positives = 237/562 (42%), Gaps = 111/562 (19%)
Query: 381 IRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGA------------------ 422
+R P+V+++GHVDHGKT+LLD IR + VAK E GGITQHIGA
Sbjct: 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKK 61
Query: 423 YQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAAD 482
+++ + + F+DTPGH AF +R RG + D+A+L++ +E PQ E++N +
Sbjct: 62 FKIRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYK 121
Query: 483 VSIIVAINKIDKLGA----DPQKVRMSLLKHDVFV-----------------ESMGGDIL 521
+VA NKID++ + + S K ++ V E +
Sbjct: 122 TPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERF 181
Query: 522 D-----------VEISAKNNLNLDKLLDAI--LLQAEMLD-LKTSINRKAEGIVVEGKLD 567
D + ISA + +LL + L Q + + LK A G ++E K +
Sbjct: 182 DRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKLEEEGPARGTILEVKEE 241
Query: 568 RGRGPVVTVLVQKGTLSKGNILVVGDQWG----KIRALFNDRGQGISKAVPSMPIEVLGL 623
G G + ++ G L KG+ + + ++RAL R L
Sbjct: 242 TGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPR----------------PL 285
Query: 624 QGMPMAGDKFGVVDSESRAREIAQYRQRVTRNKSMA---RRLGSHSALEKLVKN-----A 675
+ M + KF VD A + + + MA R+ + +EK+ +
Sbjct: 286 EEMRESRKKFQKVDEVVAAAGVKIAAPGL--DDVMAGSPIRVVTDEEIEKVKEEILKEVE 343
Query: 676 NISSKMKEFPVIIKGDVQGSVEAIVDSLGALKNSEVCLSIVHSSVGAINETDVSLAKASG 735
I E V++K D GS+EA+V+ L ++ + I + +G +++ DV A +
Sbjct: 344 EIKIDTDEEGVVVKADTLGSLEALVNEL-----RDMGVPIKKADIGDVSKRDVVEAGIAK 398
Query: 736 ------AVIFGFNVRASSQARVLAIKDEIKILYYKIIYDLLDSIKDSMSELLSPEIRETF 789
I FNV+ A K +IK+ IIY L++ ++ + + + R+
Sbjct: 399 QEDRVYGAIIAFNVKVLPGAEQELKKYDIKLFSDNIIYRLMEEFEEWIEGIEEEKKRKWM 458
Query: 790 LGNAEVLEVFAVTKL----------GNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKT 839
E + A +L + G +V G + +G + TV G +++
Sbjct: 459 ----EAIIKPAKIRLIPKLVFRQSKPAIVGVEVLTGVIRQGYPLMKDDGETV---GTVRS 511
Query: 840 LKRFKDEVSEVHAGQDCGMAFE 861
++ + V AGQ+ +A +
Sbjct: 512 MQDKGENVKSASAGQEVAIAIK 533