RPSBLAST alignment for GI: 254780787 and conserved domain: TIGR00491

>gnl|CDD|129582 TIGR00491, aIF-2, translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. Length = 590
 Score =  146 bits (370), Expect = 2e-35
 Identities = 138/562 (24%), Positives = 237/562 (42%), Gaps = 111/562 (19%)

Query: 381 IRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGA------------------ 422
           +R P+V+++GHVDHGKT+LLD IR + VAK E GGITQHIGA                  
Sbjct: 2   LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKK 61

Query: 423 YQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAAD 482
           +++  +   + F+DTPGH AF  +R RG  + D+A+L++  +E   PQ  E++N  +   
Sbjct: 62  FKIRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYK 121

Query: 483 VSIIVAINKIDKLGA----DPQKVRMSLLKHDVFV-----------------ESMGGDIL 521
              +VA NKID++      + +    S  K ++ V                 E    +  
Sbjct: 122 TPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERF 181

Query: 522 D-----------VEISAKNNLNLDKLLDAI--LLQAEMLD-LKTSINRKAEGIVVEGKLD 567
           D           + ISA     + +LL  +  L Q  + + LK      A G ++E K +
Sbjct: 182 DRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKLEEEGPARGTILEVKEE 241

Query: 568 RGRGPVVTVLVQKGTLSKGNILVVGDQWG----KIRALFNDRGQGISKAVPSMPIEVLGL 623
            G G  +  ++  G L KG+ + +         ++RAL   R                 L
Sbjct: 242 TGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPR----------------PL 285

Query: 624 QGMPMAGDKFGVVDSESRAREIAQYRQRVTRNKSMA---RRLGSHSALEKLVKN-----A 675
           + M  +  KF  VD    A  +      +  +  MA    R+ +   +EK+ +       
Sbjct: 286 EEMRESRKKFQKVDEVVAAAGVKIAAPGL--DDVMAGSPIRVVTDEEIEKVKEEILKEVE 343

Query: 676 NISSKMKEFPVIIKGDVQGSVEAIVDSLGALKNSEVCLSIVHSSVGAINETDVSLAKASG 735
            I     E  V++K D  GS+EA+V+ L      ++ + I  + +G +++ DV  A  + 
Sbjct: 344 EIKIDTDEEGVVVKADTLGSLEALVNEL-----RDMGVPIKKADIGDVSKRDVVEAGIAK 398

Query: 736 ------AVIFGFNVRASSQARVLAIKDEIKILYYKIIYDLLDSIKDSMSELLSPEIRETF 789
                   I  FNV+    A     K +IK+    IIY L++  ++ +  +   + R+  
Sbjct: 399 QEDRVYGAIIAFNVKVLPGAEQELKKYDIKLFSDNIIYRLMEEFEEWIEGIEEEKKRKWM 458

Query: 790 LGNAEVLEVFAVTKL----------GNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKT 839
               E +   A  +L            + G +V  G + +G  +      TV   G +++
Sbjct: 459 ----EAIIKPAKIRLIPKLVFRQSKPAIVGVEVLTGVIRQGYPLMKDDGETV---GTVRS 511

Query: 840 LKRFKDEVSEVHAGQDCGMAFE 861
           ++   + V    AGQ+  +A +
Sbjct: 512 MQDKGENVKSASAGQEVAIAIK 533