RPSBLAST alignment for GI: 254780787 and conserved domain: cd04167
>gnl|CDD|133367 cd04167, Snu114p, Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. Length = 213
Score = 69.9 bits (172), Expect = 3e-12
Identities = 41/134 (30%), Positives = 56/134 (41%), Gaps = 24/134 (17%)
Query: 386 VTIMGHVDHGKTSLLDAI------------------RKADVAKGEIG-GITQHIGAYQVA 426
V I GH+ HGKTSLLD + R D+ K E GI+ +
Sbjct: 3 VAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLV 62
Query: 427 YQGKN-----ITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAA 481
+DTPGH F + A R++D VLV+ E + I HA
Sbjct: 63 LPDSKGKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILE 122
Query: 482 DVSIIVAINKIDKL 495
+ I++ INKID+L
Sbjct: 123 GLPIVLVINKIDRL 136