HHsearch alignment for GI: 254780788 and conserved domain: COG0195
>COG0195 NusA Transcription elongation factor [Transcription].
Probab=100.00 E-value=0 Score=425.88 Aligned_cols=182 Identities=55% Similarity=0.878 Sum_probs=177.2
Q ss_pred CCEEEEEHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEE
Q ss_conf 93587447874887511527669999976113587028987159889999999976677755808785663167750349
Q gi|254780788|r 160 NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 (526)
Q Consensus 160 ~~ea~Lp~~e~ip~E~~~~Gdrika~i~~V~~~~rgpqi~lSRt~p~~l~~Lf~~EVPEI~~G~ieIk~iaR~pG~RsKI 239 (526)
T Consensus 1 ~~~~~l~~~~~~~~e~~~~g~ri~~~~~~v~~~~~g-~~~~srt~~~~~~~L~~~evpEi~~g~i~ik~i~rd~--r~-- 75 (190)
T COG0195 1 KVEAILPKREQIPGENFKVGDRIRALLYEVQKEAKG-QIELSRTIPELLEKLFEIEVPEIGDGVIEIKCVARDP--RA-- 75 (190)
T ss_pred CCEEECCHHHCCCCCCCCCCCEEEEEEEEEEECCCC-CEEEEECCHHHHHHHHHHHCCCCCCCCEEEEEEEECC--CC--
T ss_conf 941671554538886443476799998255405766-5999824678999999851430047857999998267--55--
Q ss_pred EEEECCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCEEEECC-CCCEEEEEECCCCCC
Q ss_conf 9994089988127655488621788998627782679955987899999762866542489875-678799998534221
Q gi|254780788|r 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DVGRIEVIVPKEQLS 318 (526)
Q Consensus 240 AV~s~d~~iDpVGAcVG~rGsRiq~I~~EL~gEkIDii~ws~d~~~fi~nAl~PA~v~~v~~de-~~~~~~v~v~~~qls 318 (526)
T Consensus 76 av~~~~~~~d~vG~~iG~~G~rvk~i~~eLg-ekIdVVe~s~d~~~fI~nal~Pa~v~~V~~~~~d~~~~~v~V~~~~~~ 154 (190)
T COG0195 76 AVVSNVVKIDPVGACIGKRGSRVKAVSEELG-EKIDVVEWSEDPAEFIKNALAPAEVLSVNIKEDDGHVAIVVVPPDQLS 154 (190)
T ss_pred CEEEEECCCCCHHHHCCCCCHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHCCCCEEEEEEEEECCCCEEEEEECHHHHH
T ss_conf 0399615768445421777628999999868-954899906999999998608354778999957981899998989974
Q ss_pred CCCCCCHHHHHHHHHHHCCEEEEEECCCH
Q ss_conf 10254427899999861674578552200
Q gi|254780788|r 319 LAIGRRGQNVRLASQLTGWTIDIITEEED 347 (526)
Q Consensus 319 ~AIGk~GqNvrLas~Ltg~~idi~~~~~~ 347 (526)
T Consensus 155 ~aIGk~G~Nvrla~~Ltg~~i~I~~~~~~ 183 (190)
T COG0195 155 LAIGKGGQNVRLASQLTGWEIDIETISEA 183 (190)
T ss_pred HCCCCCCHHHHHHHHHHCCEEEEEEHHHH
T ss_conf 44686658899999986887777762111