HHsearch alignment for GI: 254780788 and conserved domain: COG1096
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis].
Probab=91.22 E-value=0.54 Score=26.57 Aligned_cols=57 Identities=21% Similarity=0.254 Sum_probs=38.2
Q ss_pred HHHHCCCEEEEEEEECCCCEEEEEECCC-----------EEEEEHHHC------CCCCCCCCCCEEEEEEEEEC
Q ss_conf 9852083899999840576389995793-----------587447874------88751152766999997611
Q gi|254780788|r 134 FKDKVGEIISGTVKRVEYGNVIVDLGNS-----------DGVIRRDET------ISRENLRPGDRVKSYIYDVR 190 (526)
Q Consensus 134 f~~r~Geiv~G~V~r~e~~~iiVdlg~~-----------ea~Lp~~e~------ip~E~~~~Gdrika~i~~V~ 190 (526)
T Consensus 60 ~~~K~GdiV~grV~~v~~~~a~V~i~~ve~~~r~~~~~~~~~ihvs~~~~~~~~~~~d~f~~GDivrA~Vis~~ 133 (188)
T COG1096 60 PLPKGGDIVYGRVTDVREQRALVRIVGVEGKERELATSGAADIHVSQVRDGYVEKLSDAFRIGDIVRARVISTG 133 (188)
T ss_pred CCCCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECC
T ss_conf 76898879999995326608999999994333367887402589782023111020134464617999998617