HHsearch alignment for GI: 254780788 and conserved domain: COG1855
>COG1855 ATPase (PilT family) [General function prediction only].
Probab=93.66 E-value=0.35 Score=27.92 Aligned_cols=299 Identities=22% Similarity=0.292 Sum_probs=147.7
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEEEEEEE--CCCCCCCCEECHHHH--HHHCCCCCCC
Q ss_conf 239999999999999999999613687453599974998839999998851--767787532348999--8628898647
Q gi|254780788|r 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTCQISLKVA--RDRDPSIDIG 94 (526)
Q Consensus 19 EK~I~~e~i~~aie~Al~~a~kK~~~~~~~i~V~iD~~tG~i~i~~~~~VV--edved~~~eI~l~~A--~~~~~~~~iG 94 (526)
T Consensus 178 d~pl~~~ele~ia~eIi~~a~~~-----~~sfIEi~r~GatVvQlrn~RIvIarPPfSd~~EITavRPvvk~~ledY~L~ 252 (604)
T COG1855 178 DKPLTREELEEIAREIIERAKRD-----PDSFIEIDRPGATVVQLRNYRIVIARPPFSDRWEITAVRPVVKLSLEDYGLS 252 (604)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHC-----CCCEEEEECCCCEEEEECCEEEEEECCCCCCCEEEEEEEEEEEEEHHHCCCC
T ss_conf 76688999999999999987528-----6764898069966998435799994599877628999713699605542879
Q ss_pred CEEEEECCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCC-CE------------EEEEE
Q ss_conf 37998508456207---9999999999999999998877999985208389999984057-63------------89995
Q gi|254780788|r 95 GVVSDPLPPMDFGR---VAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEY-GN------------VIVDL 158 (526)
Q Consensus 95 D~i~~~i~~~~fgR---iaAq~AKQvI~QkireaEr~~i~~ef~~r~Geiv~G~V~r~e~-~~------------iiVdl 158 (526)
T Consensus 253 dkl~eRL~eraeGILIAG~PGaGKsTFaqA---------lAefy~~~GkiV----KTmEsPRDl~v~~eITQYs~l~g~m 319 (604)
T COG1855 253 DKLKERLEERAEGILIAGAPGAGKSTFAQA---------LAEFYASQGKIV----KTMESPRDLQVSPEITQYSPLEGDM 319 (604)
T ss_pred HHHHHHHHHHHCCEEEECCCCCCHHHHHHH---------HHHHHHHCCCEE----EECCCCCCCCCCHHHHHCCCCCCCH
T ss_conf 899999886416469956999974689999---------999998669688----6324751356886663206445645
Q ss_pred CCCEEE--E-EHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCH-----HHHHHHHHHHHHHHHCCEEEEEEEE
Q ss_conf 793587--4-4787488751152766999997611358702898715988-----9999999976677755808785663
Q gi|254780788|r 159 GNSDGV--I-RRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHP-----QFMVKLFHMEVPEIYNGIVQVKAVS 230 (526)
Q Consensus 159 g~~ea~--L-p~~e~ip~E~~~~Gdrika~i~~V~~~~rgpqi~lSRt~p-----~~l~~Lf~~EVPEI~~G~ieIk~ia 230 (526)
T Consensus 320 e~t~DiLLLvRPDYTIyDEm-R~t~DF~vy-aDmRLAGVGMVGVVHATrpIDAiQR~igRVELG~IPqIvDTVIfI~--- 394 (604)
T COG1855 320 EKTADILLLVRPDYTIYDEM-RKTEDFQVY-ADLRLAGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIFIK--- 394 (604)
T ss_pred HHHCCEEEEECCCCEEHHHH-HCCCCEEEE-EEEECCCCCEEEEEECCCHHHHHHHHHCCEEECCCCCCEEEEEEEE---
T ss_conf 55233799965884510334-156661676-6500115754768961780589998644063146641226899981---
Q ss_pred CCCCCEEEEEEEECCCCCCCEEEEECCCCHHHHH--------HHHHH------CCCCEEEEECCCCH--------HHHH-
Q ss_conf 1677503499994089988127655488621788--------99862------77826799559878--------9999-
Q gi|254780788|r 231 RDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQA--------VVTEL------RDEKIDIVVWSPDS--------ATFV- 287 (526)
Q Consensus 231 R~pG~RsKIAV~s~d~~iDpVGAcVG~rGsRiq~--------I~~EL------~gEkIDii~ws~d~--------~~fi- 287 (526)
T Consensus 395 --~G~V~kVy~ls~tVKV-----P~Gm~EeDLARPVIeVrDfeTg~~eYEIYtfGEqvvVvPv~~~~~~~~~~~a~~~i~ 467 (604)
T COG1855 395 --DGEVAKVYELSYTVKV-----PTGMTEEDLARPVIEVRDFETGELEYEIYTFGEQVVVVPVKEEEESPALKLAEEEIE 467 (604)
T ss_pred --CCEEEEEEEEEEEEEC-----CCCCCHHHHCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHH
T ss_conf --8818899999999976-----788786771585389765036854689997164799997568777726677999999
Q ss_pred --HHHCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCHHH
Q ss_conf --97628665424898756787999985342211025442789999986167457855220011
Q gi|254780788|r 288 --INALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 (526)
Q Consensus 288 --~nAl~PA~v~~v~~de~~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~~~~~~~ 349 (526)
T Consensus 468 ~~i~r~~p~-~~eVe~-~gd~~avv~vpe~~i~~vigk~g~~i~~ie~klgi~I~v~~~e~~~~ 529 (604)
T COG1855 468 REIKRYLPG-DVEVEV-VGDGRAVVKVPEKYIPKVIGKGGKRIKEIEKKLGIKIDVKPLEEEEE 529 (604)
T ss_pred HHHHHHCCC-CCEEEE-ECCCEEEEEECHHHHHHHHHCCCCHHHHHHHHHCCEEEEEECCCCCC
T ss_conf 999974799-825999-61871799948788567761055318999987498068888665666