HHsearch alignment for GI: 254780788 and conserved domain: COG2996
>COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only].
Probab=95.86 E-value=0.017 Score=37.50 Aligned_cols=106 Identities=19% Similarity=0.223 Sum_probs=72.7
Q ss_pred EECHHHHHHHCCC--CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECC-CCEE
Q ss_conf 2348999862889--864737998508456207999999999999999999887799998520838999998405-7638
Q gi|254780788|r 78 QISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNV 154 (526)
Q Consensus 78 eI~l~~A~~~~~~--~~iGD~i~~~i~~~~fgRiaAq~AKQvI~QkireaEr~~i~~ef~~r~Geiv~G~V~r~e-~~~i 154 (526)
T Consensus 101 ~vp~~elp~~-~~~wpq~Gd~l~v~l~~Dkk~Ri~g~~a~~~~l~~l~~-------~~~~~l~nq~v~~tVYr~~~~G~f 172 (287)
T COG2996 101 LVPLDELPTL-KSLWPQKGDKLLVYLYVDKKGRIWGTLAIEKILENLAT-------PAYNNLKNQEVDATVYRLLESGTF 172 (287)
T ss_pred EEEHHHCCCC-CCCCCCCCCEEEEEEEECCCCCEEEEECCHHHHHHCCC-------CCCHHHHCCEEEEEEEEEECCCEE
T ss_conf 6162536443-12377879899999998567847777331557876177-------211145437610599998214239
Q ss_pred EEEECCCEEEEEHHHCCCCCCCCCCCEEEEEEEEECCCC
Q ss_conf 999579358744787488751152766999997611358
Q gi|254780788|r 155 IVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 (526)
Q Consensus 155 iVdlg~~ea~Lp~~e~ip~E~~~~Gdrika~i~~V~~~~ 193 (526)
T Consensus 173 v~~e~~~~GfIh~sEr~--~~prlG~~l~~rVi~~reDg 209 (287)
T COG2996 173 VITENGYLGFIHKSERF--AEPRLGERLTARVIGVREDG 209 (287)
T ss_pred EEECCCEEEEECCHHHC--CCCCCCCEEEEEEEEECCCC
T ss_conf 99718768998606600--66667755788999982487