HHsearch alignment for GI: 254780788 and conserved domain: COG2996

>COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only].
Probab=95.86  E-value=0.017  Score=37.50  Aligned_cols=106  Identities=19%  Similarity=0.223  Sum_probs=72.7

Q ss_pred             EECHHHHHHHCCC--CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECC-CCEE
Q ss_conf             2348999862889--864737998508456207999999999999999999887799998520838999998405-7638
Q gi|254780788|r   78 QISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNV  154 (526)
Q Consensus        78 eI~l~~A~~~~~~--~~iGD~i~~~i~~~~fgRiaAq~AKQvI~QkireaEr~~i~~ef~~r~Geiv~G~V~r~e-~~~i  154 (526)
T Consensus       101 ~vp~~elp~~-~~~wpq~Gd~l~v~l~~Dkk~Ri~g~~a~~~~l~~l~~-------~~~~~l~nq~v~~tVYr~~~~G~f  172 (287)
T COG2996         101 LVPLDELPTL-KSLWPQKGDKLLVYLYVDKKGRIWGTLAIEKILENLAT-------PAYNNLKNQEVDATVYRLLESGTF  172 (287)
T ss_pred             EEEHHHCCCC-CCCCCCCCCEEEEEEEECCCCCEEEEECCHHHHHHCCC-------CCCHHHHCCEEEEEEEEEECCCEE
T ss_conf             6162536443-12377879899999998567847777331557876177-------211145437610599998214239


Q ss_pred             EEEECCCEEEEEHHHCCCCCCCCCCCEEEEEEEEECCCC
Q ss_conf             999579358744787488751152766999997611358
Q gi|254780788|r  155 IVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ  193 (526)
Q Consensus       155 iVdlg~~ea~Lp~~e~ip~E~~~~Gdrika~i~~V~~~~  193 (526)
T Consensus       173 v~~e~~~~GfIh~sEr~--~~prlG~~l~~rVi~~reDg  209 (287)
T COG2996         173 VITENGYLGFIHKSERF--AEPRLGERLTARVIGVREDG  209 (287)
T ss_pred             EEECCCEEEEECCHHHC--CCCCCCCEEEEEEEEECCCC
T ss_conf             99718768998606600--66667755788999982487