HHsearch alignment for GI: 254780788 and conserved domain: PRK06299
>PRK06299 rpsA 30S ribosomal protein S1; Reviewed.
Probab=98.46 E-value=8.6e-06 Score=61.83 Aligned_cols=64 Identities=19% Similarity=0.357 Sum_probs=35.8
Q ss_pred CCCEEEEEEEECCCCEEEEEECCCEEEEEHHHCCCC--C--CCCCCCEEEEEEEEECCCCCEEEEEEECC
Q ss_conf 083899999840576389995793587447874887--5--11527669999976113587028987159
Q gi|254780788|r 138 VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISR--E--NLRPGDRVKSYIYDVRREQRGPQVLLSRT 203 (526)
Q Consensus 138 ~Geiv~G~V~r~e~~~iiVdlg~~ea~Lp~~e~ip~--E--~~~~Gdrika~i~~V~~~~rgpqi~lSRt 203 (526)
T Consensus 104 ~~~~v~g~i~~~vKGG~~V~i~gv~aFlP~Sq~d~~~v~d~~~~vG~~l~~kIi~~d~~~~--~iVvSrr 171 (556)
T PRK06299 104 NGEIVEGVINGKVKGGFTVDLNGVRAFLPGSQVDVRPVRDTDPLEGKELEFKVIKLDKKRN--NIVVSRR 171 (556)
T ss_pred CCCEEEEEEEEEECCEEEEEECCEEEEEEHHHCCCCCCCCHHHHCCCEEEEEEEEEECCCC--EEEEEHH
T ss_conf 8987999999997780999988989997858825755566176579669999999752358--0897328