HHsearch alignment for GI: 254780788 and conserved domain: PRK06299

>PRK06299 rpsA 30S ribosomal protein S1; Reviewed.
Probab=98.37  E-value=2e-06  Score=66.54  Aligned_cols=109  Identities=24%  Similarity=0.389  Sum_probs=81.2

Q ss_pred             CCCCCCCCEEEEECCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCEEEE
Q ss_conf             889864737998508456--207999999999999999999887799998520838999998405763899957935874
Q gi|254780788|r   88 DPSIDIGGVVSDPLPPMD--FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVI  165 (526)
Q Consensus        88 ~~~~~iGD~i~~~i~~~~--fgRiaAq~AKQvI~QkireaEr~~i~~ef~~r~Geiv~G~V~r~e~~~iiVdlg~~ea~L  165 (526)
T Consensus       143 d~~~~vG~~l~~kIi~~d~~~~~i-VvS-rr~~lee~~~~~~~~~~~~l~--~G~vv~G~V~~i~~~GaFVdlggvdGll  218 (556)
T PRK06299        143 DTDPLEGKELEFKVIKLDKKRNNI-VVS-RRAVLEEERAEEREELLENLE--EGQVVEGVVKNITDYGAFVDLGGVDGLL  218 (556)
T ss_pred             CHHHHCCCEEEEEEEEEECCCCEE-EEE-HHHHHHHHHHHHHHHHHHHCC--CCCEEEEEEEEEECCCEEEEECCEEEEE
T ss_conf             617657966999999975235808-973-289888888888999998524--7972789999970575899958958999


Q ss_pred             EHHHCC------CCCCCCCCCEEEEEEEEECCCCCEEEEEEEC
Q ss_conf             478748------8751152766999997611358702898715
Q gi|254780788|r  166 RRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSR  202 (526)
Q Consensus       166 p~~e~i------p~E~~~~Gdrika~i~~V~~~~rgpqi~lSR  202 (526)
T Consensus       219 hiseiSw~rv~~p~~~~~~G~~v~vkVl~id~e~~--risLsl  259 (556)
T PRK06299        219 HITDISWKRVNHPSEVVNVGDEVKVKVLKFDKEKK--RVSLGL  259 (556)
T ss_pred             EHHHCCCCCCCCHHHHCCCCCEEEEEEEEECCCCC--EEEEEE
T ss_conf             85671556669989926689889999998826563--899997