HHsearch alignment for GI: 254780788 and conserved domain: PRK06418

>PRK06418 transcription elongation factor NusA-like protein; Validated.
Probab=95.54  E-value=0.23  Score=29.32  Aligned_cols=135  Identities=19%  Similarity=0.148  Sum_probs=98.8

Q ss_pred             EEECCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf             87159889999999976677755808785663167750349999408998812765548862178899862778267995
Q gi|254780788|r  199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV  278 (526)
Q Consensus       199 ~lSRt~p~~l~~Lf~~EVPEI~~G~ieIk~iaR~pG~RsKIAV~s~d~~iDpVGAcVG~rGsRiq~I~~EL~gEkIDii~  278 (526)
T Consensus        28 ~v~~~dV~v~~~L~kL~e-~~~l~~~~y~k-a~ev~~lvIi~~~~~~--~----~~i~k~~ki~k~Ls~~l-g~kVrVvE   98 (167)
T PRK06418         28 EVTELDVEVSKALLKLTQ-FIGLSDVEYKK-AYEVDDLVILLVGSGD--R----IPIGKGGKIEKALSRAL-GKRVRVVE   98 (167)
T ss_pred             CEEEEHHHHHHHHHHHHH-HCCCCCEEEEE-EEEECCEEEEEECCCC--C----CCHHHHHHHHHHHHHHH-CCCEEEEE
T ss_conf             545306799999998875-05755338999-9998999999984788--5----43578899999999986-89279997


Q ss_pred             CCCCHHHHHHHHCCCCCCCEEEE--CCCC-CEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEE
Q ss_conf             59878999997628665424898--7567-8799998534221102544278999998616745785
Q gi|254780788|r  279 WSPDSATFVINALRPAIVTKVVL--DEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII  342 (526)
Q Consensus       279 ws~d~~~fi~nAl~PA~v~~v~~--de~~-~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~  342 (526)
T Consensus        99 ~~~dik~li~qLl~PArvlgVNtvwlPdG~~~~~v~V~~rd~rrlp~~~e~le~ils~i~g~~vkI~  165 (167)
T PRK06418         99 KTSDIKKLAVQLLSPARVLGVNTVWLPDGTTEYVVRIPSRDRRRLPAKPEVLESILSQITGTEVKVR  165 (167)
T ss_pred             CCCCHHHHHHHHHCCHHHCEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf             3675889999972525131278899189958999996377402279998999999999649955899