HHsearch alignment for GI: 254780788 and conserved domain: PRK06676
>PRK06676 rpsA 30S ribosomal protein S1; Reviewed.
Probab=98.33 E-value=6e-06 Score=62.97 Aligned_cols=188 Identities=21% Similarity=0.314 Sum_probs=101.1
Q ss_pred CCCCCCCEEEEECCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCEEEEE
Q ss_conf 8986473799850845--62079999999999999999998877999985208389999984057638999579358744
Q gi|254780788|r 89 PSIDIGGVVSDPLPPM--DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIR 166 (526)
Q Consensus 89 ~~~~iGD~i~~~i~~~--~fgRiaAq~AKQvI~QkireaEr~~i~~ef~~r~Geiv~G~V~r~e~~~iiVdlg~~ea~Lp 166 (526)
T Consensus 61 ~~~kvGd~V~~~Vl~~~~~~~~l~L-S~kk~----~~~~~w~~~~~~~--~~g~~v~g~V~~~~kgG~~V~~~gv~gFlP 133 (390)
T PRK06676 61 DVVKVGDTLEVYVLKVEDGEGNYLL-SKRRL----EARKAWDKLEEKF--EEGEVVEVKVTEVVKGGLVVDVGGVRGFIP 133 (390)
T ss_pred HCCCCCCEEEEEEEEEECCCCEEEE-EHHHH----HHCHHHHHHHHHH--HCCCEEEEEEEEEECCCEEEEECCCEEEEE
T ss_conf 2469989999999999889973999-96792----2010088888765--379779999999955859999768168775
Q ss_pred HHHCCCC-----CCCCCCCEEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEEEE
Q ss_conf 7874887-----51152766999997611358702898715988999999997667775580878566316775034999
Q gi|254780788|r 167 RDETISR-----ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 (526)
Q Consensus 167 ~~e~ip~-----E~~~~Gdrika~i~~V~~~~rgpqi~lSRt~p~~l~~Lf~~EVPEI~~G~ieIk~iaR~pG~RsKIAV 241 (526)
T Consensus 134 ~S~ls~~~~~~~~~~-vGq~v~~kVi~vd~~~~--~ivlS~K~--~l~~~~~~~~~~~~~--------~l~~Gdvv~G~V 200 (390)
T PRK06676 134 ASLISTRFVEDLSDF-KGKTLDVKIIELDPEKN--RVILSRRA--VVEEERAEKKKELLS--------SLKEGDVVEGKV 200 (390)
T ss_pred HHHCCCCCCCCCHHH-CCEEEEEEEEEEECCCC--CEEECCHH--HHHHHHHHHHHHHHH--------HCCCCCEEEEEE
T ss_conf 487256445770554-37169999999853788--28970324--546667665766776--------346898478999
Q ss_pred EECCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECC--CCHHHHHHHHCCCCCCCEEE---ECCCCCEEEEEE
Q ss_conf 940899881276554886217889986277826799559--87899999762866542489---875678799998
Q gi|254780788|r 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS--PDSATFVINALRPAIVTKVV---LDEDVGRIEVIV 312 (526)
Q Consensus 242 ~s~d~~iDpVGAcVG~rGsRiq~I~~EL~gEkIDii~ws--~d~~~fi~nAl~PA~v~~v~---~de~~~~~~v~v 312 (526)
T Consensus 201 ~----~i~~~G~FV~lgg--v~glv------h~sels~~~~~~~~~----~~k~G~~v~~~Vl~id~~~~ri~Lsl 260 (390)
T PRK06676 201 A----RLTDFGAFVDIGG--VDGLV------HISELSHERVNKPSE----VVSVGQEVEVKVLSIDEETERISLSL 260 (390)
T ss_pred E----EEECCCEEEECCC--EEEEE------EECCCCHHHHCCHHH----HHCCCCEEEEEEEEEECCCCEEEEEE
T ss_conf 9----9945636998077--67999------961057333359888----30479757999999946788999998