HHsearch alignment for GI: 254780788 and conserved domain: PRK09202
>PRK09202 nusA transcription elongation factor NusA; Validated.
Probab=96.71 E-value=0.0016 Score=45.07 Aligned_cols=170 Identities=26% Similarity=0.405 Sum_probs=96.9
Q ss_pred CCCEEEEEEEEECCCCCEEEE---EEECCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCC-EEEEEEEECCCCCCCEEE
Q ss_conf 276699999761135870289---8715988999999997667775580878566316775-034999940899881276
Q gi|254780788|r 178 PGDRVKSYIYDVRREQRGPQV---LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS-RAKLAVFSSDSSIDPVGA 253 (526)
Q Consensus 178 ~Gdrika~i~~V~~~~rgpqi---~lSRt~p~~l~~Lf~~EVPEI~~G~ieIk~iaR~pG~-RsKIAV~s~d~~iDpVGA 253 (526)
T Consensus 255 rGsRI~~I~~E----L~gEkIDIi~~s~d~~~fi~nAls---P------A~v~~V~ide~~~~~~VvV--~d~---qlSl 316 (428)
T PRK09202 255 RGSRIQAISNE----LNGEKIDIILWSDDPAQFIINALS---P------AEVSSIVVDEDKHSMDVVV--PDD---QLSL 316 (428)
T ss_pred CCCCHHHHHHH----HCCCEEEEEECCCCHHHHHHHHCC---C------CCCEEEEECCCCCEEEEEE--CCC---CHHH
T ss_conf 86429999987----467768999678888999998179---4------2121899727788899998--865---2247
Q ss_pred EECCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 55488621788998627782679955987899999762866542489875678799998534221102544278999998
Q gi|254780788|r 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQ 333 (526)
Q Consensus 254 cVG~rGsRiq~I~~EL~gEkIDii~ws~d~~~fi~nAl~PA~v~~v~~de~~~~~~v~v~~~qls~AIGk~GqNvrLas~ 333 (526)
T Consensus 317 AIGk~GqNvrLA-s~Ltgw~IdI~s~~~~~e~~~~-------------------------------------e~~~~~-~ 357 (428)
T PRK09202 317 AIGKNGQNVRLA-SKLTGWKIDIMTEEEASEKQQA-------------------------------------EFARLI-D 357 (428)
T ss_pred HHCCCCEEHHHH-HHHHCCEEEEEEHHHHHHHHHH-------------------------------------HHHHHH-H
T ss_conf 757786859999-9977986999558999998777-------------------------------------888899-9
Q ss_pred HHCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 61674578552200110100122100011122588846788887732111477750588887765305889999999999
Q gi|254780788|r 334 LTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 (526)
Q Consensus 334 Ltg~~idi~~~~~~~~~~~~e~~~~~~~f~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA 413 (526)
T Consensus 358 ~f~~~~~~---~e-------~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~edl~~~~~del~~~~~~~~e~a~~li~~a 427 (428)
T PRK09202 358 LFMEALDV---DE-------DIAQLADDLLNLEGLDPELAFKLAEKGVKTLEDLAELAVDELIDIEGLDEEEAGELIMAA 427 (428)
T ss_pred HHHHHCCC---HH-------HHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHHC
T ss_conf 87775262---28-------888877778645699999999999869987999965798889637798999999999841
Q ss_pred H
Q ss_conf 9
Q gi|254780788|r 414 R 414 (526)
Q Consensus 414 ~ 414 (526)
T Consensus 428 r 428 (428)
T PRK09202 428 R 428 (428)
T ss_pred C
T ss_conf 9