HHsearch alignment for GI: 254780788 and conserved domain: PRK09521
>PRK09521 exosome complex RNA-binding protein Csl4; Provisional.
Probab=93.83 E-value=0.15 Score=30.62 Aligned_cols=68 Identities=21% Similarity=0.278 Sum_probs=44.7
Q ss_pred HHHCCCEEEEEEEECCCCEEEEEECC------------CEEEEEHHHCCC------CCCCCCCCEEEEEEEEECCCCCEE
Q ss_conf 85208389999984057638999579------------358744787488------751152766999997611358702
Q gi|254780788|r 135 KDKVGEIISGTVKRVEYGNVIVDLGN------------SDGVIRRDETIS------RENLRPGDRVKSYIYDVRREQRGP 196 (526)
Q Consensus 135 ~~r~Geiv~G~V~r~e~~~iiVdlg~------------~ea~Lp~~e~ip------~E~~~~Gdrika~i~~V~~~~rgp 196 (526)
T Consensus 61 ~p~vGdiVig~V~~v~~~~a~v~I~~v~g~~~~~l~~~~~g~i~i~~v~~~~~~~~~d~fr~gDIVrAkVis~~-----~ 135 (187)
T PRK09521 61 LLKKGDIVYGRVVDVKEQRALVRIVSIEGRGNRELATSKLGGIHISQVSDGYVEDLTDAFKIGDIVRAKVISTT-----D 135 (187)
T ss_pred CCCCCCEEEEEEEEECCCEEEEEEEEECCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEECC-----C
T ss_conf 88989999999999547679999999868688625654488888543786674526752487868999997359-----8
Q ss_pred EEEEECCCHHH
Q ss_conf 89871598899
Q gi|254780788|r 197 QVLLSRTHPQF 207 (526)
Q Consensus 197 qi~lSRt~p~~ 207 (526)
T Consensus 136 ~~~Lst~~~eL 146 (187)
T PRK09521 136 PIQLSTKGKDL 146 (187)
T ss_pred CEEEEECCCCC
T ss_conf 46999538884