HHsearch alignment for GI: 254780788 and conserved domain: PRK11712
>PRK11712 ribonuclease G; Provisional.
Probab=95.67 E-value=0.057 Score=33.72 Aligned_cols=181 Identities=16% Similarity=0.227 Sum_probs=111.1
Q ss_pred HHCCCEEEEEEEECCCC--EEEEEEC-CCEEEEEHHHCCCC------------------CCCCCCCEEEEEEEEECCCCC
Q ss_conf 52083899999840576--3899957-93587447874887------------------511527669999976113587
Q gi|254780788|r 136 DKVGEIISGTVKRVEYG--NVIVDLG-NSDGVIRRDETISR------------------ENLRPGDRVKSYIYDVRREQR 194 (526)
Q Consensus 136 ~r~Geiv~G~V~r~e~~--~iiVdlg-~~ea~Lp~~e~ip~------------------E~~~~Gdrika~i~~V~~~~r 194 (526)
T Consensus 36 ~~vGnIY~G~V~~V~pgl~AAFVdiG~~k~gFL~~~di~~~~~~~~~~~~~~~~~~~I~~~l~~Gq~ilVQV~Ke~~~~K 115 (489)
T PRK11712 36 GIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIVPHTECVAGEEQKQFVVRDISELVRQGQDIMVQVVKDPLGTK 115 (489)
T ss_pred CCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEHHHCCCCHHCCCCCCCCCCCCCCHHHHCCCCCEEEEEEEECCCCCC
T ss_conf 76676699999430688776999847987428785543852111333223566646767746799989999962687898
Q ss_pred EEEEE--------------------EECCC-----HHHHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEEEEEECC----
Q ss_conf 02898--------------------71598-----89999999976677755808785663167750349999408----
Q gi|254780788|r 195 GPQVL--------------------LSRTH-----PQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD---- 245 (526)
Q Consensus 195 gpqi~--------------------lSRt~-----p~~l~~Lf~~EVPEI~~G~ieIk~iaR~pG~RsKIAV~s~d---- 245 (526)
T Consensus 116 Ga~lT~~isl~GRylVl~P~~~~igiSrkI~~~~eR~rLk~i~~~~~~~~~-G-~IiRT~a~~~~~----e~l~~d~~~L 189 (489)
T PRK11712 116 GARLTTDITLPSRYLVFMPGASHVGVSQRIESEEERERLKKIVAPYCDEQG-G-FIIRTAAEGVGE----EELAQDAAFL 189 (489)
T ss_pred CCCEEEEEEECCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC-C-EEEECHHHCCCH----HHHHHHHHHH
T ss_conf 876751255453269995389987643167987899999998885388888-6-698413202999----9999999999
Q ss_pred ----------CCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCHHHH-----HHHHCCCCCCCEEEECCCC-CEEE
Q ss_conf ----------99881276554886217889986277826799559878999-----9976286654248987567-8799
Q gi|254780788|r 246 ----------SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF-----VINALRPAIVTKVVLDEDV-GRIE 309 (526)
Q Consensus 246 ----------~~iDpVGAcVG~rGsRiq~I~~EL~gEkIDii~ws~d~~~f-----i~nAl~PA~v~~v~~de~~-~~~~ 309 (526)
T Consensus 190 ~~~W~~I~~~~~~~~~p~ll~~e~~~~~r~lRD~~~~~~~~I~vD-~~~~~~~~~~~~~~~~p~~~~~v~~y~~~~plF~ 268 (489)
T PRK11712 190 KRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFVGAELDRIRVD-SRLTYEELKEFTSEYIPELTDKLEHYSGRQPIFD 268 (489)
T ss_pred HHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHCCCCCCEEEEC-CHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
T ss_conf 999999999985499961464272389999998447765278857-8899999999998759410011343268621776
Q ss_pred EEECCCCCCCCCCC
Q ss_conf 99853422110254
Q gi|254780788|r 310 VIVPKEQLSLAIGR 323 (526)
Q Consensus 310 v~v~~~qls~AIGk 323 (526)
T Consensus 269 ~y~ie~~I~~~l~~ 282 (489)
T PRK11712 269 LYDVENEIQRALER 282 (489)
T ss_pred HCCHHHHHHHHHCC
T ss_conf 42899999997168