HHsearch alignment for GI: 254780788 and conserved domain: PRK12327

>PRK12327 nusA transcription elongation factor NusA; Provisional.
Probab=100.00  E-value=0  Score=977.30  Aligned_cols=351  Identities=43%  Similarity=0.735  Sum_probs=344.6

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCEECHHHH
Q ss_conf             88999999999986239999999999999999999613687453599974998839999998851767787532348999
Q gi|254780788|r    5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVA   84 (526)
Q Consensus         5 ~~~ell~vie~va~EK~I~~e~i~~aie~Al~~a~kK~~~~~~~i~V~iD~~tG~i~i~~~~~VVedved~~~eI~l~~A   84 (526)
T Consensus         1 M~kell~al~~la~EK~I~~e~v~~aie~Al~~A~kK~~~~~~~i~V~iD~~tG~i~v~~~~~Vveev~d~~~eI~L~eA   80 (353)
T PRK12327          1 MSKEFLEALRALEEEKGISKDVLIEAIEAALLSAYKKNYGQAQNVRVEFDEKTGEVKVYAQKEVVDEVFDSRLEISLEDA   80 (353)
T ss_pred             CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEEEECCCCCCCCCEEEHHHH
T ss_conf             97899999999998749799999999999999998542399776799997899869999999836887687547777665


Q ss_pred             HHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCEEE
Q ss_conf             86288986473799850845620799999999999999999988779999852083899999840576389995793587
Q gi|254780788|r   85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV  164 (526)
Q Consensus        85 ~~~~~~~~iGD~i~~~i~~~~fgRiaAq~AKQvI~QkireaEr~~i~~ef~~r~Geiv~G~V~r~e~~~iiVdlg~~ea~  164 (526)
T Consensus        81 k~~~~~~~vGD~i~~~i~~~~fgRiAaq~AKQvi~QkireaEr~~i~~ey~~r~GeiV~G~V~r~~~~~~~Vdlg~~ea~  160 (353)
T PRK12327         81 LAINPAYELGDVIEIEVTPKDFGRIAAQTAKQVIMQRLREAEREVIYNEFKEREGDIVTGTVQRDDNRFVYVNLGKIEAV  160 (353)
T ss_pred             HHCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEECCEEEE
T ss_conf             52477651386589964835459899999999999999999999999999874396699999997588589997882464


Q ss_pred             EEHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEEEEEEC
Q ss_conf             44787488751152766999997611358702898715988999999997667775580878566316775034999940
Q gi|254780788|r  165 IRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS  244 (526)
Q Consensus       165 Lp~~e~ip~E~~~~Gdrika~i~~V~~~~rgpqi~lSRt~p~~l~~Lf~~EVPEI~~G~ieIk~iaR~pG~RsKIAV~s~  244 (526)
T Consensus       161 LP~~eqip~E~~~~Gdrika~i~~V~~~~kgp~I~lSRt~p~~v~~Lfe~EVPEI~dG~VeIk~iaRepG~RtKvAV~s~  240 (353)
T PRK12327        161 LPPAEQIPGETYKHGDRIKVYVVKVEKTTKGPQIFVSRTHPGLVKRLFELEVPEIYDGTVEIVSIAREAGDRTKIAVRSN  240 (353)
T ss_pred             CCHHHCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEECCCHHHHHHHHHHHCHHHHCCEEEEEEEECCCCCCEEEEEEEC
T ss_conf             68798699877799997999999999759974799964988999999986366863882999996016787148999925


Q ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCEEEE-CCCCCEEEEEECCCCCCCCCCC
Q ss_conf             899881276554886217889986277826799559878999997628665424898-7567879999853422110254
Q gi|254780788|r  245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGR  323 (526)
Q Consensus       245 d~~iDpVGAcVG~rGsRiq~I~~EL~gEkIDii~ws~d~~~fi~nAl~PA~v~~v~~-de~~~~~~v~v~~~qls~AIGk  323 (526)
T Consensus       241 d~~iDpvGAcVG~~G~RI~~I~~EL~gEkIDii~~s~d~~~fi~nALsPA~v~~V~i~de~~k~~~ViV~~~qlslAIGk  320 (353)
T PRK12327        241 NPNVDAIGACVGPKGQRVQNIVNELKGEKIDIIDWSEDPAEFIANALSPAKVVSVEVDDEEEKAARVVVPDYQLSLAIGK  320 (353)
T ss_pred             CCCCCCCEEEECCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCCEEEEEEECCCCCEEEEEECCHHHHHHHCC
T ss_conf             99988405888799725999998747777889967898899999737976103899975878669999881041576279


Q ss_pred             CHHHHHHHHHHHCCEEEEEECCCHHHHHHCCC
Q ss_conf             42789999986167457855220011010012
Q gi|254780788|r  324 RGQNVRLASQLTGWTIDIITEEEDSINRQKDF  355 (526)
Q Consensus       324 ~GqNvrLas~Ltg~~idi~~~~~~~~~~~~e~  355 (526)
T Consensus       321 ~GqNvrLAs~Ltgw~IdI~s~~~~~e~~~e~~  352 (353)
T PRK12327        321 EGQNARLAAKLTGWKIDIKSESEAEELGIEEE  352 (353)
T ss_pred             CCCHHHHHHHHHCCEEEEEEHHHHHHHCCHHC
T ss_conf             97749999997799799856889767364101