HHsearch alignment for GI: 254780788 and conserved domain: PRK12327
>PRK12327 nusA transcription elongation factor NusA; Provisional.
Probab=100.00 E-value=0 Score=977.30 Aligned_cols=351 Identities=43% Similarity=0.735 Sum_probs=344.6
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCEECHHHH
Q ss_conf 88999999999986239999999999999999999613687453599974998839999998851767787532348999
Q gi|254780788|r 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVA 84 (526)
Q Consensus 5 ~~~ell~vie~va~EK~I~~e~i~~aie~Al~~a~kK~~~~~~~i~V~iD~~tG~i~i~~~~~VVedved~~~eI~l~~A 84 (526)
T Consensus 1 M~kell~al~~la~EK~I~~e~v~~aie~Al~~A~kK~~~~~~~i~V~iD~~tG~i~v~~~~~Vveev~d~~~eI~L~eA 80 (353)
T PRK12327 1 MSKEFLEALRALEEEKGISKDVLIEAIEAALLSAYKKNYGQAQNVRVEFDEKTGEVKVYAQKEVVDEVFDSRLEISLEDA 80 (353)
T ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEEEECCCCCCCCCEEEHHHH
T ss_conf 97899999999998749799999999999999998542399776799997899869999999836887687547777665
Q ss_pred HHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCEEE
Q ss_conf 86288986473799850845620799999999999999999988779999852083899999840576389995793587
Q gi|254780788|r 85 RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV 164 (526)
Q Consensus 85 ~~~~~~~~iGD~i~~~i~~~~fgRiaAq~AKQvI~QkireaEr~~i~~ef~~r~Geiv~G~V~r~e~~~iiVdlg~~ea~ 164 (526)
T Consensus 81 k~~~~~~~vGD~i~~~i~~~~fgRiAaq~AKQvi~QkireaEr~~i~~ey~~r~GeiV~G~V~r~~~~~~~Vdlg~~ea~ 160 (353)
T PRK12327 81 LAINPAYELGDVIEIEVTPKDFGRIAAQTAKQVIMQRLREAEREVIYNEFKEREGDIVTGTVQRDDNRFVYVNLGKIEAV 160 (353)
T ss_pred HHCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEECCEEEE
T ss_conf 52477651386589964835459899999999999999999999999999874396699999997588589997882464
Q ss_pred EEHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEEEEEEC
Q ss_conf 44787488751152766999997611358702898715988999999997667775580878566316775034999940
Q gi|254780788|r 165 IRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 (526)
Q Consensus 165 Lp~~e~ip~E~~~~Gdrika~i~~V~~~~rgpqi~lSRt~p~~l~~Lf~~EVPEI~~G~ieIk~iaR~pG~RsKIAV~s~ 244 (526)
T Consensus 161 LP~~eqip~E~~~~Gdrika~i~~V~~~~kgp~I~lSRt~p~~v~~Lfe~EVPEI~dG~VeIk~iaRepG~RtKvAV~s~ 240 (353)
T PRK12327 161 LPPAEQIPGETYKHGDRIKVYVVKVEKTTKGPQIFVSRTHPGLVKRLFELEVPEIYDGTVEIVSIAREAGDRTKIAVRSN 240 (353)
T ss_pred CCHHHCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEECCCHHHHHHHHHHHCHHHHCCEEEEEEEECCCCCCEEEEEEEC
T ss_conf 68798699877799997999999999759974799964988999999986366863882999996016787148999925
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCEEEE-CCCCCEEEEEECCCCCCCCCCC
Q ss_conf 899881276554886217889986277826799559878999997628665424898-7567879999853422110254
Q gi|254780788|r 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGR 323 (526)
Q Consensus 245 d~~iDpVGAcVG~rGsRiq~I~~EL~gEkIDii~ws~d~~~fi~nAl~PA~v~~v~~-de~~~~~~v~v~~~qls~AIGk 323 (526)
T Consensus 241 d~~iDpvGAcVG~~G~RI~~I~~EL~gEkIDii~~s~d~~~fi~nALsPA~v~~V~i~de~~k~~~ViV~~~qlslAIGk 320 (353)
T PRK12327 241 NPNVDAIGACVGPKGQRVQNIVNELKGEKIDIIDWSEDPAEFIANALSPAKVVSVEVDDEEEKAARVVVPDYQLSLAIGK 320 (353)
T ss_pred CCCCCCCEEEECCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCCEEEEEEECCCCCEEEEEECCHHHHHHHCC
T ss_conf 99988405888799725999998747777889967898899999737976103899975878669999881041576279
Q ss_pred CHHHHHHHHHHHCCEEEEEECCCHHHHHHCCC
Q ss_conf 42789999986167457855220011010012
Q gi|254780788|r 324 RGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 (526)
Q Consensus 324 ~GqNvrLas~Ltg~~idi~~~~~~~~~~~~e~ 355 (526)
T Consensus 321 ~GqNvrLAs~Ltgw~IdI~s~~~~~e~~~e~~ 352 (353)
T PRK12327 321 EGQNARLAAKLTGWKIDIKSESEAEELGIEEE 352 (353)
T ss_pred CCCHHHHHHHHHCCEEEEEEHHHHHHHCCHHC
T ss_conf 97749999997799799856889767364101