HHsearch alignment for GI: 254780788 and conserved domain: PRK12329
>PRK12329 nusA transcription elongation factor NusA; Provisional.
Probab=100.00 E-value=0 Score=997.00 Aligned_cols=406 Identities=34% Similarity=0.530 Sum_probs=382.1
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC-----------CCCC--CCEEEEECCCCCEEEEEEEEEEECCC
Q ss_conf 8999999999986239999999999999999999613-----------6874--53599974998839999998851767
Q gi|254780788|r 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-----------YGTM--SDIRVEINPETGDISLFRLLEVVEEV 72 (526)
Q Consensus 6 ~~ell~vie~va~EK~I~~e~i~~aie~Al~~a~kK~-----------~~~~--~~i~V~iD~~tG~i~i~~~~~VVedv 72 (526)
T Consensus 6 ~~~L~~vIe~vs~EKgI~ke~I~eAlE~AL~sAykK~~~~~~~~~~~~~~e~~~~n~~V~ID~~tG~~~v~~~k~VVeev 85 (457)
T PRK12329 6 LPGLNNLIEDISEEKNLPKQAVEAALREALLKGYERYRRTLYLGSEDPFDEDYFSNFDVELDLEEEGFRVLATKIIVEEV 85 (457)
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEECCC
T ss_conf 36599999999860298989999999999999986410443333223345455450799998889968999999985267
Q ss_pred CCCCCEECHHHHHHHCCCCCCCCEEEEECCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECC
Q ss_conf 7875323489998628898647379985084--56207999999999999999999887799998520838999998405
Q gi|254780788|r 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPP--MDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE 150 (526)
Q Consensus 73 ed~~~eI~l~~A~~~~~~~~iGD~i~~~i~~--~~fgRiaAq~AKQvI~QkireaEr~~i~~ef~~r~Geiv~G~V~r~e 150 (526)
T Consensus 86 ed~~~EIsL~eA~ei~p~~eiGD~i~~ev~pe~~dFGRIAAqtAKQvI~QKIREaER~~I~eef~~k~GeIVtG~V~Rve 165 (457)
T PRK12329 86 ENEDHQIALAEVQQVADDAQLGDTVVLDVTPEKEDFGRMAAIQTKQVLAQKLRDQQRKMIQEEFADLEDPVLTARVLRFE 165 (457)
T ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE
T ss_conf 68765414999986588885698799953865246367999999999999999999999999998555967999999981
Q ss_pred CCEEEEEECC------CEEEEEHHHCCCCCCCCCCCEEEEEEEEECCC-CCEEEEEEECCCHHHHHHHHHHHHHHHHCCE
Q ss_conf 7638999579------35874478748875115276699999761135-8702898715988999999997667775580
Q gi|254780788|r 151 YGNVIVDLGN------SDGVIRRDETISRENLRPGDRVKSYIYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223 (526)
Q Consensus 151 ~~~iiVdlg~------~ea~Lp~~e~ip~E~~~~Gdrika~i~~V~~~-~rgpqi~lSRt~p~~l~~Lf~~EVPEI~~G~ 223 (526)
T Consensus 166 ~~~viv~l~~~lG~~~~EAiLP~~EqIP~E~yr~Gdrira~i~~V~~~~~kGpqIiLSRt~p~fv~kLFe~EVPEI~dG~ 245 (457)
T PRK12329 166 RQSVIMAVSSGFGRPEVEAELPKREQLPNDNYRANATFKVFLKEVSEGPRRGPQLFVSRANAGLVVYLFENEVPEIEEGV 245 (457)
T ss_pred CCCEEEEECCCCCCCCEEEEECHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEEECCCHHHHHHHHHHHCHHHHCCC
T ss_conf 69779996477776423697278886999878999989999999764678885699954877999999986455863894
Q ss_pred EEEEEEECCC-------CCEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCC
Q ss_conf 8785663167-------750349999408998812765548862178899862778267995598789999976286654
Q gi|254780788|r 224 VQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 (526)
Q Consensus 224 ieIk~iaR~p-------G~RsKIAV~s~d~~iDpVGAcVG~rGsRiq~I~~EL~gEkIDii~ws~d~~~fi~nAl~PA~v 296 (526)
T Consensus 246 VeIk~iARep~~~~r~~G~RtKIAV~S~d~~iDPVGaCVG~rG~RIq~I~~EL~gEkIDii~ws~d~~~~i~nALsPA~v 325 (457)
T PRK12329 246 VRIVAVAREANPPSRAVGPRTKIAVDTLERDVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSPDPATYIANSLSPARV 325 (457)
T ss_pred EEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCCC
T ss_conf 89999984488777788650389998069997731478889974299999885796389997578789999984396535
Q ss_pred CEE-EECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCHHHHHH-------CCCCCCCCCCCCCCCC
Q ss_conf 248-98756787999985342211025442789999986167457855220011010-------0122100011122588
Q gi|254780788|r 297 TKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ-------KDFNERTQFFMQAINV 368 (526)
Q Consensus 297 ~~v-~~de~~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~~~~~~~~~~-------~e~~~~~~~f~e~LdV 368 (526)
T Consensus 326 ~~v~~~d~~~~~~~V~V~~dqLslAIGk~GqNvrLAa~Ltgw~IdIks~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 405 (457)
T PRK12329 326 DEVRLVDPEGQHAHVLVPPDQLSLAIGKEGQNVRLAARLTGWKIDIKDSAEYDQEAEDAQVAELISQREEEEALQREAEL 405 (457)
T ss_pred CEEEEECCCCCEEEEEECCCCCHHHHCCCCCHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 17999858888799998854103762798757999999779878856689988877888765667888778888776533
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 8467888877321114777505888877653058899999999
Q gi|254780788|r 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 (526)
Q Consensus 369 DE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~ 411 (526)
T Consensus 406 ~~~~~~~~~~e~~~~~~e~~~~~~~e~~~~~~~de~~~~~~~~ 448 (457)
T PRK12329 406 RLEAEQAERAEEDARLRELYPLPEDEEEEEEEEDEDELEDEDD 448 (457)
T ss_pred HHHHHHHHHHCCCCCCHHCCCCCHHHHHHHCCCCCCCCCCCCC
T ss_conf 1568988875453320011157837766301444310013320