HHsearch alignment for GI: 254780788 and conserved domain: PTZ00162
>PTZ00162 RNA polymerase II subunit 7; Provisional.
Probab=96.67 E-value=0.011 Score=39.07 Aligned_cols=72 Identities=14% Similarity=0.193 Sum_probs=56.0
Q ss_pred HHHHCCCEEEEEEEECCCCEEEEEECCCEEEEEHHHCCCC----------------CCCCCCCEEEEEEEEECCCCCEEE
Q ss_conf 9852083899999840576389995793587447874887----------------511527669999976113587028
Q gi|254780788|r 134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISR----------------ENLRPGDRVKSYIYDVRREQRGPQ 197 (526)
Q Consensus 134 f~~r~Geiv~G~V~r~e~~~iiVdlg~~ea~Lp~~e~ip~----------------E~~~~Gdrika~i~~V~~~~rgpq 197 (526)
T Consensus 77 fkP~~~EVvdg~V~~v~~~G~fv~~GPl~~fv~~s~i~~d~~yd~~~~~~~~~~~~~~i~kgd~VR~rIvg~~~~~~~~~ 156 (170)
T PTZ00162 77 FKPFKDEVLDAIVTDVNKLGFFAQAGPLKIFVSRTAIPPNFVYDSDSAYPCFSDGTISIKPQSEVRLRLQGIRYDNSNLF 156 (170)
T ss_pred EECCCCCEEEEEEEEEECCEEEEEECCEEEEEEHHHCCCCCEECCCCCCCEECCCCCEECCCCEEEEEEEEEEECCCCCE
T ss_conf 93367989999999996407999912808998989999864897899860482788388889999999999873556746
Q ss_pred EEEECCCH
Q ss_conf 98715988
Q gi|254780788|r 198 VLLSRTHP 205 (526)
Q Consensus 198 i~lSRt~p 205 (526)
T Consensus 157 aigtm~~d 164 (170)
T PTZ00162 157 AIATINSD 164 (170)
T ss_pred EEEEECCC
T ss_conf 99996687