HHsearch alignment for GI: 254780788 and conserved domain: TIGR02236
>TIGR02236 recomb_radA DNA repair and recombination protein RadA; InterPro: IPR011938 This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO), and archaeal RadB (IPR011939 from INTERPRO). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=97.87 E-value=3.1e-05 Score=57.70 Aligned_cols=56 Identities=27% Similarity=0.335 Sum_probs=51.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 12258884678888773211147775058888776530588999999999999999
Q gi|254780788|r 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 (526)
Q Consensus 363 ~e~LdVDE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA~~~L~ 418 (526)
T Consensus 3 edLPGVGp~TA~KL~EaGy~t~~~iA~A~~~EL~~~~gI~E~~A~kiI~AAR~a~~ 58 (333)
T TIGR02236 3 EDLPGVGPATAEKLREAGYDTLEAIAVASPKELSEIAGIGEGTAAKIIQAARKAAD 58 (333)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_conf 65789757688998861078899984458579532037877789999999999846