HHsearch alignment for GI: 254780788 and conserved domain: cd00164

>cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold.

Probab=97.38  E-value=0.00087  Score=47.07  Aligned_cols=58  Identities=26%  Similarity=0.426  Sum_probs=50.1

Q ss_pred             EEEEEEECCCCEEEEEEC-CCEEEEEHHHCC------CCCCCCCCCEEEEEEEEECCCCCEEEEEEE
Q ss_conf             999998405763899957-935874478748------875115276699999761135870289871
Q gi|254780788|r  142 ISGTVKRVEYGNVIVDLG-NSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLS  201 (526)
Q Consensus       142 v~G~V~r~e~~~iiVdlg-~~ea~Lp~~e~i------p~E~~~~Gdrika~i~~V~~~~rgpqi~lS  201 (526)
T Consensus         1 v~G~V~~i~~~G~fV~~~~~~~gli~~s~~s~~~~~~~~~~~~~G~~V~~~Vi~vd~~~~--~i~LS   65 (65)
T cd00164           1 VTGKVVSITKFGVFVELEDGVEGLVHISELSDKFVKDPSEVFKVGDEVEVKVLEVDPEKG--RISLS   65 (65)
T ss_pred             CEEEEEEEECCEEEEEECCCEEEEEEHHHHCCCCCCCHHHEECCCCEEEEEEEEEECCCC--EEECC
T ss_conf             989999997845999989871788988891676535951098599999999999989999--89769