HHsearch alignment for GI: 254780788 and conserved domain: cd04473

>cd04473 S1_RecJ_like S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease. The function of this family is not fully understood. In Escherichia coli, RecJ degrades single-stranded DNA in the 5'-3' direction and participates in homologous recombination and mismatch repair.

Probab=96.70  E-value=0.0083  Score=39.89  Aligned_cols=56  Identities=29%  Similarity=0.472  Sum_probs=49.1

Q ss_pred             HCCCEEEEEEEECCCCEEEEEEC-CCEEEEEHHHCCCCCCCCCCCEEEEEEEEECCCCC
Q ss_conf             20838999998405763899957-93587447874887511527669999976113587
Q gi|254780788|r  137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR  194 (526)
Q Consensus       137 r~Geiv~G~V~r~e~~~iiVdlg-~~ea~Lp~~e~ip~E~~~~Gdrika~i~~V~~~~r  194 (526)
T Consensus        15 evG~~y~G~V~~v~~fGaFV~l~~~~~GLiHiS~l~~--~~~vGD~V~VkV~~I~~~Gk   71 (77)
T cd04473          15 EVGKLYKGKVNGVAKYGVFVDLNDHVRGLIHRSNLLR--DYEVGDEVIVQVTDIPENGN   71 (77)
T ss_pred             CCCCEEEEEEEEEEECCEEEECCCCCEEEEEEHHCCC--CCCCCCEEEEEEEEECCCCC
T ss_conf             2399999999889662889992699879689316668--78999999999999999997