HHsearch alignment for GI: 254780788 and conserved domain: cd05685
>cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea.
Probab=97.80 E-value=0.00012 Score=53.42 Aligned_cols=61 Identities=26% Similarity=0.440 Sum_probs=54.8
Q ss_pred CCEEEEEEEECCCCEEEEEEC-CCEEEEEHHHC------CCCCCCCCCCEEEEEEEEECCCCCEEEEEEE
Q ss_conf 838999998405763899957-93587447874------8875115276699999761135870289871
Q gi|254780788|r 139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDET------ISRENLRPGDRVKSYIYDVRREQRGPQVLLS 201 (526)
Q Consensus 139 Geiv~G~V~r~e~~~iiVdlg-~~ea~Lp~~e~------ip~E~~~~Gdrika~i~~V~~~~rgpqi~lS 201 (526)
T Consensus 1 G~iv~G~V~~i~~fG~FV~l~~~~~GLvhisels~~~~~~~~~~~~vGd~v~~kVi~id~e~~--ri~LS 68 (68)
T cd05685 1 GMVLEGVVTNVTDFGAFVDIGVKQDGLIHISKMADRFVSHPSDVVSVGDIVEVKVISIDEERG--RISLS 68 (68)
T ss_pred CCEEEEEEEEEECEEEEEEECCCCEEEEECHHHCCCCCCCHHHCCCCCCEEEEEEEEEECCCC--EEECC
T ss_conf 999999999996528999914997899981897678767986857999999999999989999--88779