HHsearch alignment for GI: 254780788 and conserved domain: cd05686
>cd05686 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was identified through a yeast two-hybrid interaction screen of a human kidney cDNA library using the pinin (pnn) protein as bait. pNO40 is thought to play a role in ribosome maturation and/or biogenesis.
Probab=95.23 E-value=0.072 Score=33.00 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=50.6
Q ss_pred HCCCEEEEEEEECCCCEEEEEEC--CCEEEEEHHHC------CCCCCCCCCCEEEEEEEEECCCCCEEEEEEECC
Q ss_conf 20838999998405763899957--93587447874------887511527669999976113587028987159
Q gi|254780788|r 137 KVGEIISGTVKRVEYGNVIVDLG--NSDGVIRRDET------ISRENLRPGDRVKSYIYDVRREQRGPQVLLSRT 203 (526)
Q Consensus 137 r~Geiv~G~V~r~e~~~iiVdlg--~~ea~Lp~~e~------ip~E~~~~Gdrika~i~~V~~~~rgpqi~lSRt 203 (526)
T Consensus 2 evg~i~~G~V~~i~~fGAFV~i~g~~~~GLvHiSeis~~rv~~~~dvv~vGd~V~Vkvi~id~~~---ki~LSls 73 (73)
T cd05686 2 ALYQIFKGEVASVTEYGAFVKIPGCRKQGLVHKSHMSSCRVDDPSEVVDVGEKVWVKVIGREMKD---KMKLSLS 73 (73)
T ss_pred CCCCEEEEEEEEEEECCEEEEECCCCCCEEEEEECCCCCCCCCHHHHCCCCCEEEEEEEEECCCC---CEEEECC
T ss_conf 78869999998997532399908988435599560541202899995579999999999886899---8898419