HHsearch alignment for GI: 254780788 and conserved domain: cd05693

>cd05693 S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 1 (hs1) and S. cerevisiae S1 repeat 1 (sc1). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=95.43  E-value=0.1  Score=31.82  Aligned_cols=66  Identities=17%  Similarity=0.314  Sum_probs=53.0

Q ss_pred             HCCCEEEEEEEECCCCEEEEEEC-CCEEEEEHHHCCC-------------------------CCCCCCCCEEEEEEEEEC
Q ss_conf             20838999998405763899957-9358744787488-------------------------751152766999997611
Q gi|254780788|r  137 KVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETIS-------------------------RENLRPGDRVKSYIYDVR  190 (526)
Q Consensus       137 r~Geiv~G~V~r~e~~~iiVdlg-~~ea~Lp~~e~ip-------------------------~E~~~~Gdrika~i~~V~  190 (526)
T Consensus         2 ~~G~lvLG~V~~I~~~~l~isLP~~L~G~V~it~ISd~~t~~le~~~~~~~~~~~~~e~~~L~~lF~vGq~vr~~V~s~~   81 (100)
T cd05693           2 SEGMLVLGQVKEITKLDLVISLPNGLTGYVPITNISDAYTERLEELDEESEEEDDEEELPDLEDLFSVGQLVRCKVVSLD   81 (100)
T ss_pred             CCCCEEEEEEEEECCCCEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCEEEEEEEECC
T ss_conf             88989999998984663899858985899887885299999999987300236763234587884768989999999845


Q ss_pred             CCCCE-EEEEEEC
Q ss_conf             35870-2898715
Q gi|254780788|r  191 REQRG-PQVLLSR  202 (526)
Q Consensus       191 ~~~rg-pqi~lSR  202 (526)
T Consensus        82 ~~~~~~krI~LSl   94 (100)
T cd05693          82 KSKSGKKRIELSL   94 (100)
T ss_pred             CCCCCCEEEEEEC
T ss_conf             8877854899982