HHsearch alignment for GI: 254780788 and conserved domain: cd05695
>cd05695 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 3 (hs3). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=93.60 E-value=0.63 Score=26.08 Aligned_cols=61 Identities=23% Similarity=0.342 Sum_probs=46.5
Q ss_pred CCEEEEEEEECCCCEEEEEE-CCCEEEEEHHHCCC----CCCCCCCCEEEEEEEEECCCCCEEEEEEE
Q ss_conf 83899999840576389995-79358744787488----75115276699999761135870289871
Q gi|254780788|r 139 GEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETIS----RENLRPGDRVKSYIYDVRREQRGPQVLLS 201 (526)
Q Consensus 139 Geiv~G~V~r~e~~~iiVdl-g~~ea~Lp~~e~ip----~E~~~~Gdrika~i~~V~~~~rgpqi~lS 201 (526)
T Consensus 1 GmlV~a~V~kV~~~Gl~~~fl~~F~G~Vd~~HL~~~~~~~~~Y~~~~~v~ArIL~Vdp~tK--~V~Ls 66 (66)
T cd05695 1 GMLVNARVKKVLSNGLILDFLSSFTGTVDFLHLDPEKSSKSTYKEGQKVRARILYVDPSTK--VVGLS 66 (66)
T ss_pred CCEEEEEEEEECCCCEEEEEECCEEEEEEHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCC--EEECC
T ss_conf 9559999999817948999651289998876768776870004679889999999988747--88539