HHsearch alignment for GI: 254780788 and conserved domain: cd05703

>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=96.18  E-value=0.042  Score=34.68  Aligned_cols=63  Identities=21%  Similarity=0.302  Sum_probs=54.7

Q ss_pred             CCEEEEEEEECCCCEEEEEEC-CCEEEEEHHHC--------CCCCCCCCCCEEEEEEEEECCCCCEEEEEEECC
Q ss_conf             838999998405763899957-93587447874--------887511527669999976113587028987159
Q gi|254780788|r  139 GEIISGTVKRVEYGNVIVDLG-NSDGVIRRDET--------ISRENLRPGDRVKSYIYDVRREQRGPQVLLSRT  203 (526)
Q Consensus       139 Geiv~G~V~r~e~~~iiVdlg-~~ea~Lp~~e~--------ip~E~~~~Gdrika~i~~V~~~~rgpqi~lSRt  203 (526)
T Consensus         1 G~~v~gfV~n~~~~~~wv~iSp~V~gri~~l~lSdd~s~l~~~e~~FpvG~avk~~V~~vD~e~~--~l~LS~r   72 (73)
T cd05703           1 GQEVTGFVNNVSKEFVWLTISPDVKGRIPLLDLSDDVSVLEHPEKKFPIGQALKAKVVGVDKEHK--LLRLSAR   72 (73)
T ss_pred             CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHHCCCHHHHCCHHHHCCCCCEEEEEEEEECCCCC--EEEEEEC
T ss_conf             98799999972598499998888189997054268856853888729998459999999828778--8999803