HHsearch alignment for GI: 254780788 and conserved domain: pfam08529
>pfam08529 NusA_N NusA N-terminal domain. This domain represents the RNA polymerase binding domain of NusA.
Probab=99.97 E-value=8e-31 Score=245.79 Aligned_cols=122 Identities=48% Similarity=0.782 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCEECHHHHHHH
Q ss_conf 99999999986239999999999999999999613687453599974998839999998851767787532348999862
Q gi|254780788|r 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDR 87 (526)
Q Consensus 8 ell~vie~va~EK~I~~e~i~~aie~Al~~a~kK~~~~~~~i~V~iD~~tG~i~i~~~~~VVedved~~~eI~l~~A~~~ 87 (526)
T Consensus 1 eil~~i~~la~EK~i~~e~v~~aie~al~~a~kk~~~~~~~~~V~id~~tG~i~v~~~~~VVe~~~d~~~eI~L~~A~~~ 80 (122)
T pfam08529 1 ELLEAIDAIAREKGIDKEVLIEAIEEALLSAYKKKYGEDENVRVEIDRETGEIEVYRRKEVVEEVEDPDTEISLEEAKEI 80 (122)
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEEEEECCCCCCCCCEEEHHHHHHH
T ss_conf 97999999998709899999999999999999873399676799996789839999999815666798667657878741
Q ss_pred CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 889864737998508456207999999999999999999887
Q gi|254780788|r 88 DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 (526)
Q Consensus 88 ~~~~~iGD~i~~~i~~~~fgRiaAq~AKQvI~QkireaEr~~ 129 (526)
T Consensus 81 ~~~~~iGd~i~~~i~~~~fgRiaaq~akQ~i~qklre~Er~~ 122 (122)
T pfam08529 81 DPDAEIGDEIEEEVTPKDFGRIAAQTAKQVIIQKIREAERER 122 (122)
T ss_pred CCCCEECCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 788703562668417677488999999999999999998159