HHsearch alignment for GI: 254780788 and conserved domain: pfam10246
>pfam10246 MRP-S35 Mitochondrial ribosomal protein MRP-S35. This is a family of short mitochondrial ribosomal proteins, less than 200 amino acids long. that are highly conserved from worms to humans. The structure has previously been referred to as MRP-S18 but the current numbering fits the preferred nomenclature from these authors.
Probab=95.52 E-value=0.029 Score=35.85 Aligned_cols=66 Identities=20% Similarity=0.460 Sum_probs=53.7
Q ss_pred HHHHHHHHHHCCCEEEEEEEECCCCEEEEEEC-CCEEEEEHHHCCCCCCCCCCCEEEEEEEEECCCCC
Q ss_conf 87799998520838999998405763899957-93587447874887511527669999976113587
Q gi|254780788|r 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 (526)
Q Consensus 128 ~~i~~ef~~r~Geiv~G~V~r~e~~~iiVdlg-~~ea~Lp~~e~ip~E~~~~Gdrika~i~~V~~~~r 194 (526)
T Consensus 13 ~S~fi~lG~~~gk~v~G~I~hvv~dDLYIDfG~KFhcVc~rP-~~~~~~y~~G~rV~lrLkdlELt~~ 79 (105)
T pfam10246 13 NSKFVQLGDAEGKLVIGKIFHIVEDDLYIDFGGKFHCVCKRP-AVNGEKYQRGSRVRLRLKDLELTSR 79 (105)
T ss_pred CCCHHHCCCCCCCEEEEEEEEEECCCEEEEECCEEEEEECCC-CCCHHHCCCCCEEEEEECCHHHHHH
T ss_conf 591210578557788999999706725998377167887376-6471005778889999668756445