HHsearch results for GI: 254780788 and protein with PDBid: 1go3_E
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=97.26 E-value=0.00069 Score=46.23 Aligned_cols=74 Identities=26% Similarity=0.379 Sum_probs=61.0
Q ss_pred HHHHHCCCEEEEEEEECCCCEEEEEECCCEEEEEHHHCCCC-----------------CCCCCCCEEEEEEEEECCCCC-
Q ss_conf 99852083899999840576389995793587447874887-----------------511527669999976113587-
Q gi|254780788|r 133 EFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISR-----------------ENLRPGDRVKSYIYDVRREQR- 194 (526)
Q Consensus 133 ef~~r~Geiv~G~V~r~e~~~iiVdlg~~ea~Lp~~e~ip~-----------------E~~~~Gdrika~i~~V~~~~r- 194 (526)
-|+..+||++.|+|..+..-.++|.+|..+++++.....|. ..|+.||.||+-|..|+...+
T Consensus 76 v~~p~~gev~~g~V~~v~~~Gifv~i~~~~~~~~~~~~~~d~~~fd~~~~~~~g~~~~~~~~~Gd~VrvrV~~v~~~~~~ 155 (187)
T 1go3_E 76 VYIPEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAER 155 (187)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECSSSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC--
T ss_pred EEECCCCCEEEEEEEEEEEEEEEEEECCCCCCCCHHHCCCCCEEECHHHCEEEEEECCEEECCCCEEEEEEEEEECCCCC
T ss_conf 99546898999999988720489994584430107783897466766656378867898998999899999998467666
Q ss_pred --EEEEEEECCCHH
Q ss_conf --028987159889
Q gi|254780788|r 195 --GPQVLLSRTHPQ 206 (526)
Q Consensus 195 --gpqi~lSRt~p~ 206 (526)
...|.+|...|.
T Consensus 156 ~~~~~I~~s~~~~g 169 (187)
T 1go3_E 156 KRGSKIALTMRQPY 169 (187)
T ss_dssp ---CEEEEECCSTT
T ss_pred CCCCEEEEECCCCC
T ss_conf 76658999846788