HHsearch results for GI: 254780788 and protein with PDBid: 1hh2_P
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=100.00 E-value=0 Score=919.56 Aligned_cols=342 Identities=41% Similarity=0.720 Sum_probs=336.3
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCEECHHHHH
Q ss_conf 89999999999862399999999999999999996136874535999749988399999988517677875323489998
Q gi|254780788|r 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVAR 85 (526)
Q Consensus 6 ~~ell~vie~va~EK~I~~e~i~~aie~Al~~a~kK~~~~~~~i~V~iD~~tG~i~i~~~~~VVedved~~~eI~l~~A~ 85 (526)
|.+|+.+++++|+||||+++.+++|+|+||.+||+|+||++.+++|.||++||++++|+.|.||++++|+..||+|++|+
T Consensus 2 n~ell~al~~ia~EKgI~~e~vi~aie~Al~~A~kK~~g~~~~i~V~ID~~tGei~v~~~k~VVeev~d~~~eI~l~eAk 81 (344)
T 1hh2_P 2 NIGLLEALDQLEEEKGISKEEVIPILEKALVSAYRKNFGNSKNVEVVIDRNTGNIKVYQLLEVVEEVEDPATQISLEEAK 81 (344)
T ss_dssp CCSSCSSTTTTSSSSCCCHHHHHHHHHHHHHHHHHTTTCSSSCEEEECCSTTCCCEEEEEEEEESSCSCTTSCEEHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEEEECCCCCCCCCHHHHHHHH
T ss_conf 88999999999987297999999999999999996543996857999988998699999988616777864110277766
Q ss_pred HHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCEEEE
Q ss_conf 62889864737998508456207999999999999999999887799998520838999998405763899957935874
Q gi|254780788|r 86 DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVI 165 (526)
Q Consensus 86 ~~~~~~~iGD~i~~~i~~~~fgRiaAq~AKQvI~QkireaEr~~i~~ef~~r~Geiv~G~V~r~e~~~iiVdlg~~ea~L 165 (526)
+++|++++||++.++++|.+|||+|||+|||+|.||||++||+.+|++|++|+|+||+|+|+|+++++++||+|+++|+|
T Consensus 82 ~i~~~~~iGD~i~~~i~~~~fgRiaaqtAKQvi~QkIre~Ere~i~~ef~~k~GeIVtG~V~r~~~~~~~vdlg~~ea~L 161 (344)
T 1hh2_P 82 KIDPLAEVGSIVKKELNVKNFGRIAAQTAKQVLIQRIRELEKEKQFEKYSELKGTVTTAEVIRVMGEWADIRIGKLETRL 161 (344)
T ss_dssp HHCTTCCTTCEEEEECCCCCSSSCSGGGHHHHHHHHHHHHTTCCSSCCTTCCTTCEEEEEEEEECSSEEEEEETTEEEEE
T ss_pred HHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEECCCCCCCC
T ss_conf 30113566865886567553078999999999999999999999999999856916888899985240378427645648
Q ss_pred EHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEEEEEECC
Q ss_conf 47874887511527669999976113587028987159889999999976677755808785663167750349999408
Q gi|254780788|r 166 RRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 (526)
Q Consensus 166 p~~e~ip~E~~~~Gdrika~i~~V~~~~rgpqi~lSRt~p~~l~~Lf~~EVPEI~~G~ieIk~iaR~pG~RsKIAV~s~d 245 (526)
|++||+|||+|++|||+||||.+|+.++|||||+||||||+||++||++|||||++|+|+||+|||+||+||||||+|+|
T Consensus 162 P~~eqip~E~y~~Gdrik~~i~~V~~~~kgp~IilSRt~p~~v~~Lfe~EVPEI~dG~VeIk~IaRepG~RtKvAV~s~d 241 (344)
T 1hh2_P 162 PKKEWIPGEEIKAGDLVKVYIIDVVKTTKGPKILVSRRVPEFVIGLMKLEIPEVENGIVEIKAIAREPGVRTKVAVASND 241 (344)
T ss_dssp EGGGSCTTCCCCTTCEEEEEEEEEEEETTEEEEEEESSSHHHHHHHHHHHCHHHHHSSEEEEEEEEETTTEEEEEEEESS
T ss_pred CHHHCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEECC
T ss_conf 97884975458999989999999875588965899459889999999976589738828999953578772469999348
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCEEE-ECCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 9988127655488621788998627782679955987899999762866542489-875678799998534221102544
Q gi|254780788|r 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRR 324 (526)
Q Consensus 246 ~~iDpVGAcVG~rGsRiq~I~~EL~gEkIDii~ws~d~~~fi~nAl~PA~v~~v~-~de~~~~~~v~v~~~qls~AIGk~ 324 (526)
++|||||||||+||||||+|++||+|||||||+||+||++||+|||+||+|.+|. +|++++++.|+||++|||+||||+
T Consensus 242 ~~iDpvGa~vG~~G~ri~~i~~el~ge~idii~~s~d~~~fi~nal~Pa~v~~v~~~~~~~~~~~v~v~~~~~~~aIGk~ 321 (344)
T 1hh2_P 242 PNVDPIGACIGEGGSRIAAILKELKGEKLDVLKWSDDPKQLIANALAPATVIEVEILDKENKAARVLVPPTQLSLAIGKG 321 (344)
T ss_dssp TTSCHHHHHHCTTSTTHHHHHHHTTTCEEEEEECCSSHHHHHHHHTCSSCCSEEEEEETTTTEEEEEECTTSHHHHHCGG
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEEECCCCCEEEEEECHHHHHHHHCCC
T ss_conf 87551014565897179999998579935899668999999998449563018999738887799998802402641798
Q ss_pred HHHHHHHHHHHCCEEEEEECCCH
Q ss_conf 27899999861674578552200
Q gi|254780788|r 325 GQNVRLASQLTGWTIDIITEEED 347 (526)
Q Consensus 325 GqNvrLas~Ltg~~idi~~~~~~ 347 (526)
||||||||+||||+|||++..+.
T Consensus 322 G~Nv~la~~l~~~~idi~~~~~~ 344 (344)
T 1hh2_P 322 GQNARLAAKLTGWKIDIKPIMNL 344 (344)
T ss_dssp GHHHHHHHHHHSCEEEEEECCCC
T ss_pred CHHHHHHHHHHCCEEEEEECCCC
T ss_conf 72599999987987522770229