HHsearch results for GI: 254780788 and protein with PDBid: 1u9l_A

>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=96.30  E-value=0.0065  Score=39.04  Aligned_cols=55  Identities=27%  Similarity=0.373  Sum_probs=49.0

Q ss_pred             HHCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             640779998999999987984788965326775212312344432112453343588999999999984122
Q gi|254780788|r  437 LCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYK  508 (526)
Q Consensus       437 L~~l~gl~~~~~~~L~e~gIktleDlAels~dEL~~~~~~~~~~~~~~~gil~~~~l~~~~A~~lIM~AR~~  508 (526)
                      +++--+++..++..|...|..|+|++|..+.+||..|.                 |++++.|+.|+..|+..
T Consensus         8 F~e~LdvDe~iA~lLv~EGF~siEeIAy~~~~eL~~Ie-----------------gfDee~a~eL~~RA~~~   62 (70)
T 1u9l_A            8 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIE-----------------GLDEPTVEALRERAKNA   62 (70)
T ss_dssp             HHHHHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTST-----------------TCCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHHHHHHHCCCCHHHHHCCCHHHHHHCC-----------------CCCHHHHHHHHHHHHHH
T ss_conf             99984863999999998655979998759999997631-----------------55899999999999999