HHsearch results for GI: 254780788 and protein with PDBid: 1u9l_A
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=96.30 E-value=0.0065 Score=39.04 Aligned_cols=55 Identities=27% Similarity=0.373 Sum_probs=49.0
Q ss_pred HHCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 640779998999999987984788965326775212312344432112453343588999999999984122
Q gi|254780788|r 437 LCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508 (526)
Q Consensus 437 L~~l~gl~~~~~~~L~e~gIktleDlAels~dEL~~~~~~~~~~~~~~~gil~~~~l~~~~A~~lIM~AR~~ 508 (526)
+++--+++..++..|...|..|+|++|..+.+||..|. |++++.|+.|+..|+..
T Consensus 8 F~e~LdvDe~iA~lLv~EGF~siEeIAy~~~~eL~~Ie-----------------gfDee~a~eL~~RA~~~ 62 (70)
T 1u9l_A 8 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIE-----------------GLDEPTVEALRERAKNA 62 (70)
T ss_dssp HHHHHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTST-----------------TCCHHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHCCCCHHHHHCCCHHHHHHCC-----------------CCCHHHHHHHHHHHHHH
T ss_conf 99984863999999998655979998759999997631-----------------55899999999999999