HHsearch results for GI: 254780788 and protein with PDBid: 1y14_B
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=97.25 E-value=0.00087 Score=45.47 Aligned_cols=75 Identities=16% Similarity=0.165 Sum_probs=64.0
Q ss_pred HHHHHHCCCEEEEEEEECCCCEEEEEECCCEEEEEHHHCCC----------------CCCCCCCCEEEEEEEEECCCCCE
Q ss_conf 99985208389999984057638999579358744787488----------------75115276699999761135870
Q gi|254780788|r 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETIS----------------RENLRPGDRVKSYIYDVRREQRG 195 (526)
Q Consensus 132 ~ef~~r~Geiv~G~V~r~e~~~iiVdlg~~ea~Lp~~e~ip----------------~E~~~~Gdrika~i~~V~~~~rg 195 (526)
.-|+.+.|+++.|+|..+....+++.+|..++++|+....+ +..|+.||.||+-|..|+.+.+.
T Consensus 77 ~v~~p~~ge~i~g~V~~v~~~Gi~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Gd~V~vkV~~v~~~~~~ 156 (171)
T 1y14_B 77 VVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSS 156 (171)
T ss_dssp EEECCCTTCEEEEEEEEEETTEEEEEETTEEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEETTE
T ss_pred EEEECCCCCEEEEEEEEEECCEEEEEECCCEEEEECHHCCCCEEECHHHCEEEEEECCEEECCCCEEEEEEEEEECCCCC
T ss_conf 99835799899999999967879999569469987211344258865883689861881993899999999999826486
Q ss_pred EEEEEECCCHH
Q ss_conf 28987159889
Q gi|254780788|r 196 PQVLLSRTHPQ 206 (526)
Q Consensus 196 pqi~lSRt~p~ 206 (526)
.+++-|-..|.
T Consensus 157 i~iig~l~~~~ 167 (171)
T 1y14_B 157 IHAIGSIKEDY 167 (171)
T ss_dssp EEEEEECCSTT
T ss_pred CEEEEEECCCC
T ss_conf 28999988898