HHsearch results for GI: 254780788 and protein with PDBid: 2bx2_L
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=96.02 E-value=0.032 Score=33.95 Aligned_cols=143 Identities=20% Similarity=0.300 Sum_probs=88.8
Q ss_pred HHCCCEEEEEEEECCCC--EEEEEEC-CCEEEEEHHHCCC---------------CCCCCCCCEEEEEEEEECCCCCEEE
Q ss_conf 52083899999840576--3899957-9358744787488---------------7511527669999976113587028
Q gi|254780788|r 136 DKVGEIISGTVKRVEYG--NVIVDLG-NSDGVIRRDETIS---------------RENLRPGDRVKSYIYDVRREQRGPQ 197 (526)
Q Consensus 136 ~r~Geiv~G~V~r~e~~--~iiVdlg-~~ea~Lp~~e~ip---------------~E~~~~Gdrika~i~~V~~~~rgpq 197 (526)
..+|.|..|.|.++.++ ..+||+| +-.|+||.++..| .+.+++||.+-+=|..=-...|||.
T Consensus 43 ~~vGnIY~GrV~~v~pgl~AAFVdiG~~k~gFL~~~di~~~~~~~~~~~~~~~~I~~~l~~Gq~ilVQV~ke~~~~Kg~~ 122 (517)
T 2bx2_L 43 QKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAA 122 (517)
T ss_dssp CCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTCCCE
T ss_pred CCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEHHHCCHHHCCCCCCCCCCCCHHHCCCCCCEEEEEECCCCCCCCCCC
T ss_conf 88798899999423798866999618997148886884845415552224565554407899989999724676777765
Q ss_pred EE---------------------EECCCH-----HHHHHHHHHHHHHHHCCEEEEEEEECCCCCEE-------------E
Q ss_conf 98---------------------715988-----99999999766777558087856631677503-------------4
Q gi|254780788|r 198 VL---------------------LSRTHP-----QFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA-------------K 238 (526)
Q Consensus 198 i~---------------------lSRt~p-----~~l~~Lf~~EVPEI~~G~ieIk~iaR~pG~Rs-------------K 238 (526)
+. .||... .+.+.|-....|+= -|+ -++..|-....-. .
T Consensus 123 lT~~Isl~GrylVl~P~~~~i~~sski~~~~er~~l~~~l~~~~~pe~-~G~-IiRT~a~~~~~~~l~~d~~~L~~~w~~ 200 (517)
T 2bx2_L 123 LTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEG-MGL-IVRTAGVGKSAEALQWDLSFRLKHWEA 200 (517)
T ss_dssp EESSCCEECSSEEEETTCTTCCEECTTCC------HHHHHTTSCCCTT-CEE-EECGGGGGCCHHHHHHHHHHHHHHHHH
T ss_pred EECEEEECCCCEEECCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCC-CEE-EEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 524064078746874578861115044775889999999986358988-438-998755699999999999999999988
Q ss_pred EEEEECCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCH
Q ss_conf 999940899881276554886217889986277826799559878
Q gi|254780788|r 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 (526)
Q Consensus 239 IAV~s~d~~iDpVGAcVG~rGsRiq~I~~EL~gEkIDii~ws~d~ 283 (526)
|.-.+ .--+..+|+-..++-+..+.+.+-++.++.|.-++..
T Consensus 201 i~~~~---~~~~~P~ll~~~~~~~~r~lrd~~~~~~~~i~vd~~~ 242 (517)
T 2bx2_L 201 IKKAA---ESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPK 242 (517)
T ss_dssp HHHHH---HTSCSCEEEECCCCHHHHHHHHHCCTTEEEEEESCHH
T ss_pred HHHHH---CCCCCCEEEECCCCHHHHHHHHHCCHHHHCCCCCCHH
T ss_conf 88754---2489863786287499999998636033223367688