HHsearch results for GI: 254780788 and protein with PDBid: 2c35_B

>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1

Probab=97.07  E-value=0.0014  Score=43.91  Aligned_cols=75  Identities=17%  Similarity=0.242  Sum_probs=63.3

Q ss_pred             HHHHHHCCCEEEEEEEECCCCEEEEEECCCEEEEEHHHCCCCC------------------CCCCCCEEEEEEEEECCCC
Q ss_conf             9998520838999998405763899957935874478748875------------------1152766999997611358
Q gi|254780788|r  132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRE------------------NLRPGDRVKSYIYDVRREQ  193 (526)
Q Consensus       132 ~ef~~r~Geiv~G~V~r~e~~~iiVdlg~~ea~Lp~~e~ip~E------------------~~~~Gdrika~i~~V~~~~  193 (526)
                      .-|+..+|+++.|+|..+...+++|.+|...+.+|+....+..                  .|+.||.||+-|..|+.+.
T Consensus        75 ~v~~p~~Ge~~~g~V~~v~~~Gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Gd~V~v~V~~v~~~~  154 (172)
T 2c35_B           75 IVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDK  154 (172)
T ss_dssp             EEECCCTTCEEEEEEEEEETTEEEEEETTEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEET
T ss_pred             EEEECCCCCEEEEEEEEECCCEEEEEECCCEEEEEEECCCCCCCEEECCCCEEEEECCCCEEEECCCEEEEEEEEEEECC
T ss_conf             99815689799999998737749999658079887410478761475266259994047849928999999999998644


Q ss_pred             CEEEEEEECCCHH
Q ss_conf             7028987159889
Q gi|254780788|r  194 RGPQVLLSRTHPQ  206 (526)
Q Consensus       194 rgpqi~lSRt~p~  206 (526)
                      +..+++-|-..|.
T Consensus       155 ~~i~~ig~l~~~~  167 (172)
T 2c35_B          155 NDIFAIGSLMDDY  167 (172)
T ss_dssp             TEEEEEEECCSTT
T ss_pred             CCCEEEEEECCCC
T ss_conf             7848999988999