HHsearch results for GI: 254780788 and protein with PDBid: 2cxc_A
>2cxc_A NUSA; transcription termination, RNA binding protein, KH domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix K1} PDB: 2cy1_A
Probab=99.63 E-value=3.8e-16 Score=136.31 Aligned_cols=135 Identities=18% Similarity=0.328 Sum_probs=120.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEE
Q ss_conf 89871598899999999766777558087856631677503499994089988127655488621788998627782679
Q gi|254780788|r 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDI 276 (526)
Q Consensus 197 qi~lSRt~p~~l~~Lf~~EVPEI~~G~ieIk~iaR~pG~RsKIAV~s~d~~iDpVGAcVG~rGsRiq~I~~EL~gEkIDi 276 (526)
.+.||..|..++ .||+... +.-....+.++++.|-...|.+++ ||+++|..|++|+.+ ++..|.+|++
T Consensus 4 ~~~l~~~~~r~i-~lfe~~t-----~~~~~~c~~~d~~~~iifvVp~~~-----vG~iIGkgG~~Ik~i-~e~tg~~I~v 71 (144)
T 2cxc_A 4 DYRITLEELRYI-SVFHSIT-----GVTAYRCIVDEENNRLIFLVSEGE-----AGRAIGRGGRLIKLL-REALGKNIEV 71 (144)
T ss_dssp ---CCHHHHHHH-HHHHHHH-----SCCEEEEEEEGGGTEEEEEECTTC-----HHHHHCGGGHHHHHH-HHHHSSEEEE
T ss_pred CEEECHHHHHHH-HHHHHHH-----CCCEEEEEEECCCCEEEEEECCCH-----HHHEECCCCHHHHHH-HHHHCCEEEE
T ss_conf 688689998999-9999986-----985368999379998999988672-----424158781899999-9971990898
Q ss_pred EECCCCHHHHHHHHCCCCCCCEEEECCCC--CEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEE
Q ss_conf 95598789999976286654248987567--87999985342211025442789999986167457855
Q gi|254780788|r 277 VVWSPDSATFVINALRPAIVTKVVLDEDV--GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 (526)
Q Consensus 277 i~ws~d~~~fi~nAl~PA~v~~v~~de~~--~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~ 343 (526)
+.|++||..|+.|+++|+.+..+.+++.. ..+.+.||+++..++|||+|+|+|++.+||||.++|.+
T Consensus 72 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vG~iIGK~G~nIr~i~~l~~~~~~I~~ 140 (144)
T 2cxc_A 72 VEYSSDLERIVKNLFPGVKIESINVRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVEK 140 (144)
T ss_dssp EECCSSHHHHHHHHSTTSCEEEEEEEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEEE
T ss_pred ECCCCCHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEECHHHEEEEECCCCHHHHHHHHHHHHHCCCEE
T ss_conf 636688789864057863279999841678457999948565655667897899999999876459769