HHsearch results for GI: 254780788 and protein with PDBid: 2cxc_A

>2cxc_A NUSA; transcription termination, RNA binding protein, KH domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix K1} PDB: 2cy1_A
Probab=99.63  E-value=3.8e-16  Score=136.31  Aligned_cols=135  Identities=18%  Similarity=0.328  Sum_probs=120.3

Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEE
Q ss_conf             89871598899999999766777558087856631677503499994089988127655488621788998627782679
Q gi|254780788|r  197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDI  276 (526)
Q Consensus       197 qi~lSRt~p~~l~~Lf~~EVPEI~~G~ieIk~iaR~pG~RsKIAV~s~d~~iDpVGAcVG~rGsRiq~I~~EL~gEkIDi  276 (526)
                      .+.||..|..++ .||+...     +.-....+.++++.|-...|.+++     ||+++|..|++|+.+ ++..|.+|++
T Consensus         4 ~~~l~~~~~r~i-~lfe~~t-----~~~~~~c~~~d~~~~iifvVp~~~-----vG~iIGkgG~~Ik~i-~e~tg~~I~v   71 (144)
T 2cxc_A            4 DYRITLEELRYI-SVFHSIT-----GVTAYRCIVDEENNRLIFLVSEGE-----AGRAIGRGGRLIKLL-REALGKNIEV   71 (144)
T ss_dssp             ---CCHHHHHHH-HHHHHHH-----SCCEEEEEEEGGGTEEEEEECTTC-----HHHHHCGGGHHHHHH-HHHHSSEEEE
T ss_pred             CEEECHHHHHHH-HHHHHHH-----CCCEEEEEEECCCCEEEEEECCCH-----HHHEECCCCHHHHHH-HHHHCCEEEE
T ss_conf             688689998999-9999986-----985368999379998999988672-----424158781899999-9971990898


Q ss_pred             EECCCCHHHHHHHHCCCCCCCEEEECCCC--CEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEE
Q ss_conf             95598789999976286654248987567--87999985342211025442789999986167457855
Q gi|254780788|r  277 VVWSPDSATFVINALRPAIVTKVVLDEDV--GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT  343 (526)
Q Consensus       277 i~ws~d~~~fi~nAl~PA~v~~v~~de~~--~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~  343 (526)
                      +.|++||..|+.|+++|+.+..+.+++..  ..+.+.||+++..++|||+|+|+|++.+||||.++|.+
T Consensus        72 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vG~iIGK~G~nIr~i~~l~~~~~~I~~  140 (144)
T 2cxc_A           72 VEYSSDLERIVKNLFPGVKIESINVRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVEK  140 (144)
T ss_dssp             EECCSSHHHHHHHHSTTSCEEEEEEEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEEE
T ss_pred             ECCCCCHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEECHHHEEEEECCCCHHHHHHHHHHHHHCCCEE
T ss_conf             636688789864057863279999841678457999948565655667897899999999876459769