HHsearch results for GI: 254780788 and protein with PDBid: 2cxc_A
>2cxc_A NUSA; transcription termination, RNA binding protein, KH domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix K1} PDB: 2cy1_A
Probab=97.66 E-value=1.2e-05 Score=59.10 Aligned_cols=118 Identities=16% Similarity=0.188 Sum_probs=75.3
Q ss_pred HHCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 76286654248987567879999853422110254427899999861674578552200110100122100011122588
Q gi|254780788|r 289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 (526)
Q Consensus 289 nAl~PA~v~~v~~de~~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~~~~~~~~~~~e~~~~~~~f~e~LdV 368 (526)
.++..|.+...++|++..++..+||..+..++|||+|.|+|-..+.||.+|++...+......-... ..
T Consensus 19 e~~t~~~~~~c~~~d~~~~iifvVp~~~vG~iIGkgG~~Ik~i~e~tg~~I~v~e~~~~~~~~~~~~-----------~~ 87 (144)
T 2cxc_A 19 HSITGVTAYRCIVDEENNRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSSDLERIVKNL-----------FP 87 (144)
T ss_dssp HHHHSCCEEEEEEEGGGTEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCSSHHHHHHHH-----------ST
T ss_pred HHHHCCCEEEEEEECCCCEEEEEECCCHHHHEECCCCHHHHHHHHHHCCEEEEECCCCCHHHHHHCC-----------CC
T ss_conf 9986985368999379998999988672424158781899999997199089863668878986405-----------78
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 8467888877321114777505888877653058899999999999999
Q gi|254780788|r 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 (526)
Q Consensus 369 DE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA~~~L 417 (526)
....+...+.+...+......++.+..-.+-|=.-..+.+++.-...++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~i~Vp~~~vG~iIGK~G~nIr~i~~l~~~~~ 136 (144)
T 2cxc_A 88 GVKIESINVRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLF 136 (144)
T ss_dssp TSCEEEEEEEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEECCCCCEEEEEEECHHHEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 6327999984167845799994856565566789789999999987645