HHsearch results for GI: 254780788 and protein with PDBid: 2cxc_A

>2cxc_A NUSA; transcription termination, RNA binding protein, KH domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix K1} PDB: 2cy1_A
Probab=97.66  E-value=1.2e-05  Score=59.10  Aligned_cols=118  Identities=16%  Similarity=0.188  Sum_probs=75.3

Q ss_pred             HHCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             76286654248987567879999853422110254427899999861674578552200110100122100011122588
Q gi|254780788|r  289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV  368 (526)
Q Consensus       289 nAl~PA~v~~v~~de~~~~~~v~v~~~qls~AIGk~GqNvrLas~Ltg~~idi~~~~~~~~~~~~e~~~~~~~f~e~LdV  368 (526)
                      .++..|.+...++|++..++..+||..+..++|||+|.|+|-..+.||.+|++...+......-...           ..
T Consensus        19 e~~t~~~~~~c~~~d~~~~iifvVp~~~vG~iIGkgG~~Ik~i~e~tg~~I~v~e~~~~~~~~~~~~-----------~~   87 (144)
T 2cxc_A           19 HSITGVTAYRCIVDEENNRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSSDLERIVKNL-----------FP   87 (144)
T ss_dssp             HHHHSCCEEEEEEEGGGTEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCSSHHHHHHHH-----------ST
T ss_pred             HHHHCCCEEEEEEECCCCEEEEEECCCHHHHEECCCCHHHHHHHHHHCCEEEEECCCCCHHHHHHCC-----------CC
T ss_conf             9986985368999379998999988672424158781899999997199089863668878986405-----------78


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             8467888877321114777505888877653058899999999999999
Q gi|254780788|r  369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL  417 (526)
Q Consensus       369 DE~iA~~LV~eGf~SiEeIa~a~~eeL~~IeGfdee~a~eL~~rA~~~L  417 (526)
                      ....+...+.+...+......++.+..-.+-|=.-..+.+++.-...++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~i~Vp~~~vG~iIGK~G~nIr~i~~l~~~~~  136 (144)
T 2cxc_A           88 GVKIESINVRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLF  136 (144)
T ss_dssp             TSCEEEEEEEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEECCCCCEEEEEEECHHHEEEEECCCCHHHHHHHHHHHHHC
T ss_conf             6327999984167845799994856565566789789999999987645