HHsearch results for GI: 254780788 and protein with PDBid: 2ja9_A

>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=96.07  E-value=0.031  Score=34.03  Aligned_cols=60  Identities=22%  Similarity=0.288  Sum_probs=46.8

Q ss_pred             HHHHHCCCEEEEEEEECCCCEEEEEECC-CEEE-EEHHH-----CCCCCCCCCCCEEEEEEEEECCC
Q ss_conf             9985208389999984057638999579-3587-44787-----48875115276699999761135
Q gi|254780788|r  133 EFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGV-IRRDE-----TISRENLRPGDRVKSYIYDVRRE  192 (526)
Q Consensus       133 ef~~r~Geiv~G~V~r~e~~~iiVdlg~-~ea~-Lp~~e-----~ip~E~~~~Gdrika~i~~V~~~  192 (526)
                      .|..++|++|-|+|..+..+.+.||++. ..+. ||...     +-.+..|++||-+-|-|..|...
T Consensus         2 RY~P~~gD~VIG~V~~~~~~~w~vdI~s~~~~~~l~~~~f~~~~kr~r~~l~~GDli~arV~~v~~~   68 (175)
T 2ja9_A            2 RYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEKE   68 (175)
T ss_dssp             CCCCCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSSTTCCSSSCCCCCTTCEEEEEEEECCTT
T ss_pred             CCCCCCCCEEEEEEEEECCCEEEEECCCCCHHHCCCCCCCCCHHHHCCCCCCCCCEEEEEEEEECCC
T ss_conf             8769998999999999708839999188425430665546641231553488998899999993378