HHsearch results for GI: 254780788 and protein with PDBid: 2ja9_A
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=96.07 E-value=0.031 Score=34.03 Aligned_cols=60 Identities=22% Similarity=0.288 Sum_probs=46.8
Q ss_pred HHHHHCCCEEEEEEEECCCCEEEEEECC-CEEE-EEHHH-----CCCCCCCCCCCEEEEEEEEECCC
Q ss_conf 9985208389999984057638999579-3587-44787-----48875115276699999761135
Q gi|254780788|r 133 EFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGV-IRRDE-----TISRENLRPGDRVKSYIYDVRRE 192 (526)
Q Consensus 133 ef~~r~Geiv~G~V~r~e~~~iiVdlg~-~ea~-Lp~~e-----~ip~E~~~~Gdrika~i~~V~~~ 192 (526)
.|..++|++|-|+|..+..+.+.||++. ..+. ||... +-.+..|++||-+-|-|..|...
T Consensus 2 RY~P~~gD~VIG~V~~~~~~~w~vdI~s~~~~~~l~~~~f~~~~kr~r~~l~~GDli~arV~~v~~~ 68 (175)
T 2ja9_A 2 RYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEKE 68 (175)
T ss_dssp CCCCCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSSTTCCSSSCCCCCTTCEEEEEEEECCTT
T ss_pred CCCCCCCCEEEEEEEEECCCEEEEECCCCCHHHCCCCCCCCCHHHHCCCCCCCCCEEEEEEEEECCC
T ss_conf 8769998999999999708839999188425430665546641231553488998899999993378